@jbrowse/plugin-variants 1.7.9 → 2.0.0

package/dist/VariantFeatureWidget/VariantFeatureWidget.js

@@ -1,251 +1,204 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __assign = (this && this.__assign) || function () {
+    __assign = Object.assign || function(t) {
+        for (var s, i = 1, n = arguments.length; i < n; i++) {
+            s = arguments[i];
+            for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p))
+                t[p] = s[p];
+        }
+        return t;
+    };
+    return __assign.apply(this, arguments);
+};
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = void 0;
-
-var _objectWithoutProperties2 = _interopRequireDefault(require("@babel/runtime/helpers/objectWithoutProperties"));
-
-var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
-
-var _defineProperty2 = _interopRequireDefault(require("@babel/runtime/helpers/defineProperty"));
-
-var _toConsumableArray2 = _interopRequireDefault(require("@babel/runtime/helpers/toConsumableArray"));
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _react = _interopRequireWildcard(require("react"));
-
-var _core = require("@material-ui/core");
-
-var _simpleFeature = _interopRequireDefault(require("@jbrowse/core/util/simpleFeature"));
-
-var _xDataGrid = require("@mui/x-data-grid");
-
-var _mobxReact = require("mobx-react");
-
-var _util = require("@jbrowse/core/util");
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _BaseFeatureDetail = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
-
-var _BreakendOptionDialog = _interopRequireDefault(require("./BreakendOptionDialog"));
-
-var _vcf = require("@gmod/vcf");
-
-var _excluded = ["samples"];
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
-
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
-
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __rest = (this && this.__rest) || function (s, e) {
+    var t = {};
+    for (var p in s) if (Object.prototype.hasOwnProperty.call(s, p) && e.indexOf(p) < 0)
+        t[p] = s[p];
+    if (s != null && typeof Object.getOwnPropertySymbols === "function")
+        for (var i = 0, p = Object.getOwnPropertySymbols(s); i < p.length; i++) {
+            if (e.indexOf(p[i]) < 0 && Object.prototype.propertyIsEnumerable.call(s, p[i]))
+                t[p[i]] = s[p[i]];
+        }
+    return t;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
+    if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
+        if (ar || !(i in from)) {
+            if (!ar) ar = Array.prototype.slice.call(from, 0, i);
+            ar[i] = from[i];
+        }
+    }
+    return to.concat(ar || Array.prototype.slice.call(from));
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+/* eslint-disable @typescript-eslint/no-explicit-any */
+var react_1 = __importStar(require("react"));
+var material_1 = require("@mui/material");
+var simpleFeature_1 = __importDefault(require("@jbrowse/core/util/simpleFeature"));
+var x_data_grid_1 = require("@mui/x-data-grid");
+var mobx_react_1 = require("mobx-react");
+var util_1 = require("@jbrowse/core/util");
+var mobx_state_tree_1 = require("mobx-state-tree");
+var BaseFeatureDetail_1 = require("@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail");
+var BreakendOptionDialog_1 = __importDefault(require("./BreakendOptionDialog"));
+var vcf_1 = require("@gmod/vcf");
 function VariantSamples(props) {
-  var _useState = (0, _react.useState)({}),
-      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
-      filter = _useState2[0],
-      setFilter = _useState2[1];
-
-  var _useState3 = (0, _react.useState)(false),
-      _useState4 = (0, _slicedToArray2.default)(_useState3, 2),
-      showFilters = _useState4[0],
-      setShowFilters = _useState4[1];
-
-  var feature = props.feature;
-  var _feature$samples = feature.samples,
-      samples = _feature$samples === void 0 ? {} : _feature$samples;
-  var preFilteredRows = Object.entries(samples);
-
-  if (!preFilteredRows.length) {
-    return null;
-  }
-
-  var infoFields = ['sample'].concat((0, _toConsumableArray2.default)(Object.keys(preFilteredRows[0][1]))).map(function (field) {
-    return {
-      field: field
-    };
-  });
-  var error;
-  var rows = [];
-  var filters = Object.keys(filter); // catch some error thrown from regex
-  // note: maps all values into a string, if this is not done rows are not
-  // sortable by the data-grid
-
-  try {
-    rows = preFilteredRows.map(function (row) {
-      return _objectSpread(_objectSpread({}, Object.fromEntries(Object.entries(row[1]).map(function (entry) {
-        return [entry[0], String(entry[1])];
-      }))), {}, {
-        sample: row[0],
-        id: row[0]
-      });
-    }).filter(function (row) {
-      return filters.length ? filters.every(function (key) {
-        var val = row[key];
-        var currFilter = filter[key];
-        return currFilter ? val.match(new RegExp(currFilter, 'i')) : true;
-      }) : true;
-    });
-  } catch (e) {
-    error = e;
-  } // disableSelectionOnClick helps avoid
-  // https://github.com/mui-org/material-ui-x/issues/1197
-
-
-  return /*#__PURE__*/_react.default.createElement(_BaseFeatureDetail.BaseCard, (0, _extends2.default)({}, props, {
-    title: "Samples"
-  }), error ? /*#__PURE__*/_react.default.createElement(_core.Typography, {
-    color: "error"
-  }, "".concat(error)) : null, /*#__PURE__*/_react.default.createElement(_core.FormControlLabel, {
-    control: /*#__PURE__*/_react.default.createElement(_core.Checkbox, {
-      checked: showFilters,
-      onChange: function onChange() {
-        return setShowFilters(function (f) {
-          return !f;
+    var _a = __read((0, react_1.useState)({}), 2), filter = _a[0], setFilter = _a[1];
+    var _b = __read((0, react_1.useState)(false), 2), showFilters = _b[0], setShowFilters = _b[1];
+    var feature = props.feature;
+    var _c = feature.samples, samples = _c === void 0 ? {} : _c;
+    var preFilteredRows = Object.entries(samples);
+    if (!preFilteredRows.length) {
+        return null;
+    }
+    var infoFields = __spreadArray(['sample'], __read(Object.keys(preFilteredRows[0][1])), false).map(function (field) { return ({
+        field: field,
+    }); });
+    var error;
+    var rows = [];
+    var filters = Object.keys(filter);
+    // catch some error thrown from regex
+    // note: maps all values into a string, if this is not done rows are not
+    // sortable by the data-grid
+    try {
+        rows = preFilteredRows
+            .map(function (row) { return (__assign(__assign({}, Object.fromEntries(Object.entries(row[1]).map(function (entry) { return [entry[0], String(entry[1])]; }))), { sample: row[0], id: row[0] })); })
+            .filter(function (row) {
+            return filters.length
+                ? filters.every(function (key) {
+                    var val = row[key];
+                    var currFilter = filter[key];
+                    return currFilter ? val.match(new RegExp(currFilter, 'i')) : true;
+                })
+                : true;
         });
-      }
-    }),
-    label: "Show sample filters"
-  }), showFilters ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "These filters can use a plain text search or regex style query, e.g. in the genotype field, entering 1 will query for all genotypes that include the first alternate allele e.g. 0|1 or 1|1, entering [1-9]\\d* will find any non-zero allele e.g. 0|2 or 2/33"), infoFields.map(function (_ref) {
-    var field = _ref.field;
-    return /*#__PURE__*/_react.default.createElement(_core.TextField, {
-      key: "filter-".concat(field),
-      placeholder: "Filter ".concat(field),
-      value: filter[field] || '',
-      onChange: function onChange(event) {
-        return setFilter(_objectSpread(_objectSpread({}, filter), {}, (0, _defineProperty2.default)({}, field, event.target.value)));
-      }
-    });
-  })) : null, /*#__PURE__*/_react.default.createElement("div", {
-    style: {
-      height: 600,
-      width: '100%',
-      overflow: 'auto'
     }
-  }, /*#__PURE__*/_react.default.createElement(_xDataGrid.DataGrid, {
-    rows: rows,
-    columns: infoFields,
-    rowHeight: 20,
-    headerHeight: 25,
-    disableSelectionOnClick: true,
-    disableColumnMenu: true
-  })));
+    catch (e) {
+        error = e;
+    }
+    // disableSelectionOnClick helps avoid
+    // https://github.com/mui-org/material-ui-x/issues/1197
+    return (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, __assign({}, props, { title: "Samples" }),
+        error ? react_1.default.createElement(material_1.Typography, { color: "error" }, "".concat(error)) : null,
+        react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: showFilters, onChange: function () { return setShowFilters(function (f) { return !f; }); } }), label: "Show sample filters" }),
+        showFilters ? (react_1.default.createElement(react_1.default.Fragment, null,
+            react_1.default.createElement(material_1.Typography, null, "These filters can use a plain text search or regex style query, e.g. in the genotype field, entering 1 will query for all genotypes that include the first alternate allele e.g. 0|1 or 1|1, entering [1-9]\\d* will find any non-zero allele e.g. 0|2 or 2/33"),
+            infoFields.map(function (_a) {
+                var field = _a.field;
+                return (react_1.default.createElement(material_1.TextField, { key: "filter-".concat(field), placeholder: "Filter ".concat(field), value: filter[field] || '', onChange: function (event) {
+                        var _a;
+                        return setFilter(__assign(__assign({}, filter), (_a = {}, _a[field] = event.target.value, _a)));
+                    } }));
+            }))) : null,
+        react_1.default.createElement("div", { style: { height: 600, width: '100%', overflow: 'auto' } },
+            react_1.default.createElement(x_data_grid_1.DataGrid, { rows: rows, columns: infoFields, disableSelectionOnClick: true, rowHeight: 25, disableColumnMenu: true }))));
 }
-
 function BreakendPanel(props) {
-  var model = props.model,
-      locStrings = props.locStrings,
-      feature = props.feature;
-  var session = (0, _util.getSession)(model);
-
-  var _getEnv = (0, _mobxStateTree.getEnv)(session),
-      pluginManager = _getEnv.pluginManager;
-
-  var _useState5 = (0, _react.useState)(false),
-      _useState6 = (0, _slicedToArray2.default)(_useState5, 2),
-      breakpointDialog = _useState6[0],
-      setBreakpointDialog = _useState6[1];
-
-  var viewType;
-
-  try {
-    viewType = pluginManager.getViewType('BreakpointSplitView');
-  } catch (e) {// ignore
-  }
-
-  var simpleFeature = new _simpleFeature.default(feature);
-  return /*#__PURE__*/_react.default.createElement(_BaseFeatureDetail.BaseCard, (0, _extends2.default)({}, props, {
-    title: "Breakends"
-  }), /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Link to linear view of breakend endpoints"), /*#__PURE__*/_react.default.createElement("ul", null, locStrings.map(function (locString) {
-    return /*#__PURE__*/_react.default.createElement("li", {
-      key: "".concat(JSON.stringify(locString))
-    }, /*#__PURE__*/_react.default.createElement(_core.Link, {
-      href: "#",
-      onClick: function onClick(event) {
-        event.preventDefault();
-        var view = model.view;
-
-        try {
-          if (view) {
-            var _view$navToLocString;
-
-            (_view$navToLocString = view.navToLocString) === null || _view$navToLocString === void 0 ? void 0 : _view$navToLocString.call(view, locString);
-          } else {
-            throw new Error('No view associated with this feature detail panel anymore');
-          }
-        } catch (e) {
-          console.error(e);
-          session.notify("".concat(e));
-        }
-      }
-    }, "LGV - ".concat(locString)));
-  })), viewType ? /*#__PURE__*/_react.default.createElement("div", null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Launch split views with breakend source and target"), /*#__PURE__*/_react.default.createElement("ul", null, locStrings.map(function (locString) {
-    return /*#__PURE__*/_react.default.createElement("li", {
-      key: "".concat(JSON.stringify(locString))
-    }, /*#__PURE__*/_react.default.createElement(_core.Link, {
-      href: "#",
-      onClick: function onClick(event) {
-        event.preventDefault();
-        setBreakpointDialog(true);
-      }
-    }, "".concat(feature.refName, ":").concat(feature.start, " // ").concat(locString, " (split view)")));
-  })), breakpointDialog ? /*#__PURE__*/_react.default.createElement(_BreakendOptionDialog.default, {
-    model: model,
-    feature: simpleFeature,
-    viewType: viewType,
-    handleClose: function handleClose() {
-      setBreakpointDialog(false);
+    var model = props.model, locStrings = props.locStrings, feature = props.feature;
+    var session = (0, util_1.getSession)(model);
+    var pluginManager = (0, mobx_state_tree_1.getEnv)(session).pluginManager;
+    var _a = __read((0, react_1.useState)(false), 2), breakpointDialog = _a[0], setBreakpointDialog = _a[1];
+    var viewType;
+    try {
+        viewType = pluginManager.getViewType('BreakpointSplitView');
     }
-  }) : null) : null);
+    catch (e) {
+        // ignore
+    }
+    var simpleFeature = new simpleFeature_1.default(feature);
+    return (react_1.default.createElement(BaseFeatureDetail_1.BaseCard, __assign({}, props, { title: "Breakends" }),
+        react_1.default.createElement(material_1.Typography, null, "Link to linear view of breakend endpoints"),
+        react_1.default.createElement("ul", null, locStrings.map(function (locString) { return (react_1.default.createElement("li", { key: "".concat(JSON.stringify(locString)) },
+            react_1.default.createElement(material_1.Link, { href: "#", onClick: function (event) {
+                    var _a;
+                    event.preventDefault();
+                    var view = model.view;
+                    try {
+                        if (view) {
+                            (_a = view.navToLocString) === null || _a === void 0 ? void 0 : _a.call(view, locString);
+                        }
+                        else {
+                            throw new Error('No view associated with this feature detail panel anymore');
+                        }
+                    }
+                    catch (e) {
+                        console.error(e);
+                        session.notify("".concat(e));
+                    }
+                } }, "LGV - ".concat(locString)))); })),
+        viewType ? (react_1.default.createElement("div", null,
+            react_1.default.createElement(material_1.Typography, null, "Launch split views with breakend source and target"),
+            react_1.default.createElement("ul", null, locStrings.map(function (locString) { return (react_1.default.createElement("li", { key: "".concat(JSON.stringify(locString)) },
+                react_1.default.createElement(material_1.Link, { href: "#", onClick: function (event) {
+                        event.preventDefault();
+                        setBreakpointDialog(true);
+                    } }, "".concat(feature.refName, ":").concat(feature.start, " // ").concat(locString, " (split view)")))); })),
+            breakpointDialog ? (react_1.default.createElement(BreakendOptionDialog_1.default, { model: model, feature: simpleFeature, viewType: viewType, handleClose: function () {
+                    setBreakpointDialog(false);
+                } })) : null)) : null));
 }
-
 function VariantFeatureDetails(props) {
-  var model = props.model;
-  var featureData = model.featureData,
-      descriptions = model.descriptions;
-  var feat = JSON.parse(JSON.stringify(featureData));
-  var samples = feat.samples,
-      rest = (0, _objectWithoutProperties2.default)(feat, _excluded);
-  var basicDescriptions = {
-    CHROM: 'chromosome: An identifier from the reference genome',
-    POS: 'position: The reference position, with the 1st base having position 1',
-    ID: 'identifier: Semi-colon separated list of unique identifiers where available',
-    REF: 'reference base(s): Each base must be one of A,C,G,T,N (case insensitive).',
-    ALT: 'alternate base(s): Comma-separated list of alternate non-reference alleles',
-    QUAL: 'quality: Phred-scaled quality score for the assertion made in ALT',
-    FILTER: 'filter status: PASS if this position has passed all filters, otherwise a semicolon-separated list of codes for filters that fail'
-  };
-  return /*#__PURE__*/_react.default.createElement(_core.Paper, {
-    "data-testid": "variant-side-drawer"
-  }, /*#__PURE__*/_react.default.createElement(_BaseFeatureDetail.FeatureDetails, (0, _extends2.default)({
-    feature: rest,
-    descriptions: _objectSpread(_objectSpread({}, basicDescriptions), descriptions)
-  }, props)), /*#__PURE__*/_react.default.createElement(_core.Divider, null), feat.type === 'breakend' ? /*#__PURE__*/_react.default.createElement(BreakendPanel, {
-    feature: feat,
-    locStrings: feat.ALT.map(function (alt) {
-      var _parseBreakend;
-
-      return ((_parseBreakend = (0, _vcf.parseBreakend)(alt)) === null || _parseBreakend === void 0 ? void 0 : _parseBreakend.MatePosition) || '';
-    }),
-    model: model
-  }) : null, feat.type === 'translocation' ? /*#__PURE__*/_react.default.createElement(BreakendPanel, {
-    feature: feat,
-    model: model,
-    locStrings: ["".concat(feat.INFO.CHR2[0], ":").concat(feat.INFO.END)]
-  }) : null, /*#__PURE__*/_react.default.createElement(VariantSamples, (0, _extends2.default)({
-    feature: feat
-  }, props)));
+    var model = props.model;
+    var featureData = model.featureData, descriptions = model.descriptions;
+    var feat = JSON.parse(JSON.stringify(featureData));
+    var samples = feat.samples, rest = __rest(feat, ["samples"]);
+    var basicDescriptions = {
+        CHROM: 'chromosome: An identifier from the reference genome',
+        POS: 'position: The reference position, with the 1st base having position 1',
+        ID: 'identifier: Semi-colon separated list of unique identifiers where available',
+        REF: 'reference base(s): Each base must be one of A,C,G,T,N (case insensitive).',
+        ALT: 'alternate base(s): Comma-separated list of alternate non-reference alleles',
+        QUAL: 'quality: Phred-scaled quality score for the assertion made in ALT',
+        FILTER: 'filter status: PASS if this position has passed all filters, otherwise a semicolon-separated list of codes for filters that fail',
+    };
+    return (react_1.default.createElement(material_1.Paper, { "data-testid": "variant-side-drawer" },
+        react_1.default.createElement(BaseFeatureDetail_1.FeatureDetails, __assign({ feature: rest, descriptions: __assign(__assign({}, basicDescriptions), descriptions) }, props)),
+        react_1.default.createElement(material_1.Divider, null),
+        feat.type === 'breakend' ? (react_1.default.createElement(BreakendPanel, { feature: feat, locStrings: feat.ALT.map(function (alt) { var _a; return ((_a = (0, vcf_1.parseBreakend)(alt)) === null || _a === void 0 ? void 0 : _a.MatePosition) || ''; }), model: model })) : null,
+        feat.type === 'translocation' ? (react_1.default.createElement(BreakendPanel, { feature: feat, model: model, locStrings: ["".concat(feat.INFO.CHR2[0], ":").concat(feat.INFO.END)] })) : null,
+        react_1.default.createElement(VariantSamples, __assign({ feature: feat }, props))));
 }
-
-var _default = (0, _mobxReact.observer)(VariantFeatureDetails);
-
-exports.default = _default;
+exports.default = (0, mobx_react_1.observer)(VariantFeatureDetails);
+//# sourceMappingURL=VariantFeatureWidget.js.map

package/dist/VariantFeatureWidget/VariantFeatureWidget.js.map

@@ -0,0 +1 @@
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package/dist/VariantFeatureWidget/index.d.ts

@@ -1,11 +1,37 @@
-export function stateModelFactory(pluginManager: any): import("mobx-state-tree").IModelType<{
+import PluginManager from '@jbrowse/core/PluginManager';
+export declare const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+export declare function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"VariantFeatureWidget">;
-    view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<any>>;
+    type: import("mobx-state-tree").ISimpleType<"BaseFeatureWidget">;
     featureData: import("mobx-state-tree").IType<any, any, any>;
+    formattedFields: import("mobx-state-tree").IType<any, any, any>;
+    unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
+    view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+    track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+} & {
+    type: import("mobx-state-tree").ISimpleType<"VariantFeatureWidget">;
     descriptions: import("mobx-state-tree").IType<any, any, any>;
 }, {
-    setFeatureData(data: any): void;
+    setFeatureData(featureData: Record<string, unknown>): void;
     clearFeatureData(): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export const configSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+    setFormattedData(feat: Record<string, unknown>): void;
+} & {
+    afterCreate(): void;
+}, {
+    type: "BaseFeatureWidget";
+} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
+    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+    type: import("mobx-state-tree").ISimpleType<"BaseFeatureWidget">;
+    featureData: import("mobx-state-tree").IType<any, any, any>;
+    formattedFields: import("mobx-state-tree").IType<any, any, any>;
+    unformattedFeatureData: import("mobx-state-tree").IType<any, any, any>;
+    view: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+    track: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
+}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, {
+    id: string;
+    type: "BaseFeatureWidget";
+    track: import("mobx-state-tree").ReferenceIdentifier | undefined;
+    view: import("mobx-state-tree").ReferenceIdentifier | undefined;
+    formattedFields: any;
+    finalizedFeatureData: any;
+} & import("mobx-state-tree")._NotCustomized>;

package/dist/VariantFeatureWidget/index.js

@@ -1,35 +1,16 @@
 "use strict";
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.configSchema = void 0;
-exports.stateModelFactory = stateModelFactory;
-
-var _configuration = require("@jbrowse/core/configuration");
-
-var _mst = require("@jbrowse/core/util/types/mst");
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var configSchema = (0, _configuration.ConfigurationSchema)('VariantFeatureWidget', {});
-exports.configSchema = configSchema;
-
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.stateModelFactory = exports.configSchema = void 0;
+var configuration_1 = require("@jbrowse/core/configuration");
+var mobx_state_tree_1 = require("mobx-state-tree");
+var BaseFeatureWidget_1 = require("@jbrowse/core/BaseFeatureWidget");
+exports.configSchema = (0, configuration_1.ConfigurationSchema)('VariantFeatureWidget', {});
 function stateModelFactory(pluginManager) {
-  return _mobxStateTree.types.model('VariantFeatureWidget', {
-    id: _mst.ElementId,
-    type: _mobxStateTree.types.literal('VariantFeatureWidget'),
-    view: _mobxStateTree.types.safeReference(pluginManager.pluggableMstType('view', 'stateModel')),
-    featureData: _mobxStateTree.types.frozen(),
-    descriptions: _mobxStateTree.types.frozen()
-  }).actions(function (self) {
-    return {
-      setFeatureData: function setFeatureData(data) {
-        self.featureData = data;
-      },
-      clearFeatureData: function clearFeatureData() {
-        self.featureData = undefined;
-      }
-    };
-  });
-}
+    var baseModel = (0, BaseFeatureWidget_1.stateModelFactory)(pluginManager);
+    return mobx_state_tree_1.types.compose(baseModel, mobx_state_tree_1.types.model('VariantFeatureWidget', {
+        type: mobx_state_tree_1.types.literal('VariantFeatureWidget'),
+        descriptions: mobx_state_tree_1.types.frozen(),
+    }));
+}
+exports.stateModelFactory = stateModelFactory;
+//# sourceMappingURL=index.js.map

package/dist/VariantFeatureWidget/index.js.map

@@ -0,0 +1 @@
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