@jbrowse/plugin-sv-inspector 3.7.0 → 4.0.0

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Files changed (24) hide show
  1. package/esm/LaunchSvInspectorView/index.js +6 -13
  2. package/esm/SvInspectorView/BreakpointSplitViewChoiceDialog.d.ts +1 -0
  3. package/esm/SvInspectorView/BreakpointSplitViewChoiceDialog.js +1 -0
  4. package/esm/SvInspectorView/components/CircularViewOptions.d.ts +1 -1
  5. package/esm/SvInspectorView/components/CircularViewOptions.js +2 -2
  6. package/esm/SvInspectorView/components/SvInspectorView.d.ts +1 -1
  7. package/esm/SvInspectorView/components/SvInspectorView.js +3 -6
  8. package/esm/SvInspectorView/index.js +24 -22
  9. package/esm/SvInspectorView/model.d.ts +201 -365
  10. package/esm/SvInspectorView/model.js +41 -10
  11. package/esm/index.js +3 -6
  12. package/package.json +27 -33
  13. package/dist/LaunchSvInspectorView/index.d.ts +0 -2
  14. package/dist/LaunchSvInspectorView/index.js +0 -21
  15. package/dist/SvInspectorView/components/CircularViewOptions.d.ts +0 -5
  16. package/dist/SvInspectorView/components/CircularViewOptions.js +0 -18
  17. package/dist/SvInspectorView/components/SvInspectorView.d.ts +0 -5
  18. package/dist/SvInspectorView/components/SvInspectorView.js +0 -44
  19. package/dist/SvInspectorView/index.d.ts +0 -2
  20. package/dist/SvInspectorView/index.js +0 -79
  21. package/dist/SvInspectorView/model.d.ts +0 -766
  22. package/dist/SvInspectorView/model.js +0 -208
  23. package/dist/index.d.ts +0 -7
  24. package/dist/index.js +0 -32
package/esm/SvInspectorView/model.d.ts CHANGED
@@ -1,31 +1,36 @@
1
1
  import type PluginManager from '@jbrowse/core/PluginManager';
2
2
  import type { Region } from '@jbrowse/core/util';
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- import type { Instance } from 'mobx-state-tree';
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- declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
7
- minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
3
+ import type { Instance } from '@jbrowse/mobx-state-tree';
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+ interface SvInspectorViewInit {
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+ assembly: string;
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+ uri: string;
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+ fileType?: string;
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+ }
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+ declare function SvInspectorViewF(pluginManager: PluginManager): import("@jbrowse/mobx-state-tree").IModelType<{
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+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
12
+ minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
8
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  } & {
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("mobx-state-tree").ISimpleType<"SvInspectorView">;
11
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
12
- onlyDisplayRelevantRegionsInCircularView: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
13
- spreadsheetView: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
14
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
15
- displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
16
- minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
14
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
15
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"SvInspectorView">;
16
+ height: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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+ onlyDisplayRelevantRegionsInCircularView: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
18
+ spreadsheetView: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
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+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
20
+ displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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+ minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
17
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  } & {
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- type: import("mobx-state-tree").ISimpleType<"SpreadsheetView">;
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- offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
20
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
21
- hideVerticalResizeHandle: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
22
- hideFilterControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
23
- importWizard: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
24
- fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
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- selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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- cachedFileLocation: import("mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
23
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"SpreadsheetView">;
24
+ offsetPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
25
+ height: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
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+ hideVerticalResizeHandle: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
27
+ hideFilterControls: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ importWizard: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
29
+ fileType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ hasColumnNameLine: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ columnNameLineNumber: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
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+ selectedAssemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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+ cachedFileLocation: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
29
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  }, {
30
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  fileTypes: string[];
31
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  fileSource: any;
@@ -39,15 +44,11 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
39
44
  tracksForAssembly(selectedAssembly: string): {
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  track: {
41
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  [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
47
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
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  setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
44
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  [x: string]: any;
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- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
46
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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- [x: string]: any;
48
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
49
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
50
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
50
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & any & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
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+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
51
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  label: string;
52
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  assemblyNames: any;
53
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  type: string;
@@ -66,18 +67,18 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
66
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  import(assemblyName: string): Promise<void>;
67
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  } & {
68
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  afterAttach(): void;
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- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
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- spreadsheet: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
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- rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
72
- columns: import("mobx-state-tree").IType<{
70
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>, [undefined]>;
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+ spreadsheet: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IModelType<{
72
+ rowSet: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
73
+ columns: import("@jbrowse/mobx-state-tree").IType<{
73
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  name: string;
74
75
  }[], {
75
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  name: string;
76
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  }[], {
77
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  name: string;
78
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  }[]>;
79
- assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
80
- visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
80
+ assemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
81
+ visibleColumns: import("@jbrowse/mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
81
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  }, {
82
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  visibleRowFlags: Record<number, boolean> | undefined;
83
84
  } & {
@@ -94,10 +95,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
94
95
  } | {
95
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  field: string;
96
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  width: number;
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- renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
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- id: number;
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- feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
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- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
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+ renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<any, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
101
99
  type?: undefined;
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  valueGetter?: undefined;
103
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  valueFormatter?: undefined;
@@ -119,18 +117,19 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
119
117
  } & {
120
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  setVisibleRows(arg?: Record<number, boolean>): void;
121
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  setVisibleColumns(arg: Record<string, boolean>): void;
122
- }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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- rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
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- columns: import("mobx-state-tree").IType<{
120
+ }, import("@jbrowse/mobx-state-tree").ModelCreationType<import("@jbrowse/mobx-state-tree/dist/internal").ExtractCFromProps<{
121
+ rowSet: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
122
+ columns: import("@jbrowse/mobx-state-tree").IType<{
125
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  name: string;
126
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  }[], {
127
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  name: string;
128
126
  }[], {
129
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  name: string;
130
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  }[]>;
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- assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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- visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
133
- }>>, import("mobx-state-tree")._NotCustomized>>;
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+ assemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
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+ visibleColumns: import("@jbrowse/mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
131
+ }>>, import("@jbrowse/mobx-state-tree")._NotCustomized>>;
132
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetViewModel").SpreadsheetViewInit | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetViewModel").SpreadsheetViewInit | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetViewModel").SpreadsheetViewInit | undefined>;
134
133
  }, {
135
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  width: number;
136
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  } & {
@@ -151,6 +150,9 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
151
150
  resizeHeight(distance: number): number;
152
151
  resizeWidth(distance: number): number;
153
152
  displaySpreadsheet(spreadsheet?: import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").SpreadsheetModel): void;
153
+ setInit(init?: import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetViewModel").SpreadsheetViewInit): void;
154
+ } & {
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+ afterAttach(): void;
154
156
  } & {
155
157
  menuItems(): {
156
158
  label: string;
@@ -159,175 +161,71 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
159
161
  };
160
162
  onClick: () => void;
161
163
  }[];
162
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree").ModelSnapshotType<{
163
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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- minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
166
- } & {
167
- type: import("mobx-state-tree").ISimpleType<"SpreadsheetView">;
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- offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
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- hideVerticalResizeHandle: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
171
- hideFilterControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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- importWizard: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
173
- fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
174
- hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
175
- columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
176
- selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
177
- cachedFileLocation: import("mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
178
- }, {
179
- fileTypes: string[];
180
- fileSource: any;
181
- error: unknown;
182
- loading: boolean;
183
- } & {
184
- readonly isReadyToOpen: any;
185
- readonly fileName: any;
186
- readonly requiresUnzip: any;
187
- isValidRefName(refName: string, assemblyName?: string): boolean;
188
- tracksForAssembly(selectedAssembly: string): {
189
- track: {
190
- [x: string]: any;
191
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
192
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
193
- [x: string]: any;
194
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
195
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
196
- [x: string]: any;
197
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
198
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
199
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
200
- label: string;
201
- assemblyNames: any;
202
- type: string;
203
- loc: import("@jbrowse/core/util").FileLocation;
204
- }[];
205
- } & {
206
- setSelectedAssemblyName(s: string): void;
207
- setFileSource(newSource: unknown): void;
208
- setColumnNameLineNumber(newnumber: number): void;
209
- setFileType(typeName: string): void;
210
- setError(error: unknown): void;
211
- setLoading(arg: boolean): void;
212
- cancelButton(): void;
213
- setCachedFileHandle(arg: import("@jbrowse/core/util").FileLocation): void;
214
- } & {
215
- import(assemblyName: string): Promise<void>;
216
- } & {
217
- afterAttach(): void;
218
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
219
- spreadsheet: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
220
- rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
221
- columns: import("mobx-state-tree").IType<{
222
- name: string;
223
- }[], {
224
- name: string;
225
- }[], {
226
- name: string;
227
- }[]>;
228
- assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
229
- visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
230
- }, {
231
- visibleRowFlags: Record<number, boolean> | undefined;
232
- } & {
233
- readonly rows: {
234
- id: number;
235
- feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
236
- }[] | undefined;
237
- readonly initialized: boolean | undefined;
238
- } & {
239
- readonly dataGridColumns: ({
240
- field: string;
241
- width: number;
242
- type: "number" | undefined;
243
- } | {
244
- field: string;
245
- width: number;
246
- renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
247
- id: number;
248
- feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
249
- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
250
- type?: undefined;
251
- valueGetter?: undefined;
252
- valueFormatter?: undefined;
253
- } | {
254
- field: string;
255
- type: "number";
256
- width: number;
257
- valueGetter: (_val: unknown, row: {
258
- feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
259
- }) => number | undefined;
260
- valueFormatter: (arg: never) => string;
261
- renderCell?: undefined;
262
- })[] | undefined;
263
- } & {
264
- readonly visibleRows: {
265
- id: number;
266
- feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
267
- }[] | undefined;
268
- } & {
269
- setVisibleRows(arg?: Record<number, boolean>): void;
270
- setVisibleColumns(arg: Record<string, boolean>): void;
271
- }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
272
- rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
273
- columns: import("mobx-state-tree").IType<{
274
- name: string;
275
- }[], {
276
- name: string;
277
- }[], {
278
- name: string;
279
- }[]>;
280
- assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
281
- visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
282
- }>>, import("mobx-state-tree")._NotCustomized>>;
283
- }> | {
164
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, {
165
+ importWizard: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
166
+ fileType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
167
+ hasColumnNameLine: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
168
+ columnNameLineNumber: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
169
+ selectedAssemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
170
+ cachedFileLocation: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
171
+ }>;
284
172
  spreadsheet: {
173
+ assemblyName: string | undefined;
285
174
  columns: {
286
175
  name: string;
287
176
  }[];
288
- assemblyName: string | undefined;
289
177
  visibleColumns: Record<string, boolean>;
290
178
  };
179
+ height: number;
291
180
  id: string;
292
181
  type: "SpreadsheetView";
293
- height: number;
294
182
  displayName: string | undefined;
295
183
  minimized: boolean;
296
- hideVerticalResizeHandle: boolean;
297
184
  offsetPx: number;
185
+ hideVerticalResizeHandle: boolean;
298
186
  hideFilterControls: boolean;
299
- importWizard: import("mobx-state-tree").ModelSnapshotType<{
300
- fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
301
- hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
302
- columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
303
- selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
304
- cachedFileLocation: import("mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
187
+ } | {
188
+ importWizard: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
189
+ fileType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
190
+ hasColumnNameLine: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
191
+ columnNameLineNumber: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
192
+ selectedAssemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
193
+ cachedFileLocation: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
305
194
  }>;
195
+ height: number;
196
+ id: string;
197
+ type: "SpreadsheetView";
198
+ displayName: string | undefined;
199
+ minimized: boolean;
200
+ offsetPx: number;
201
+ hideVerticalResizeHandle: boolean;
202
+ hideFilterControls: boolean;
306
203
  }>, [undefined]>;
307
- circularView: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
308
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
309
- displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
310
- minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
204
+ circularView: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IModelType<{
205
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
206
+ displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
207
+ minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
311
208
  } & {
312
- type: import("mobx-state-tree").ISimpleType<"CircularView">;
313
- offsetRadians: import("mobx-state-tree").IType<number | undefined, number, number>;
314
- bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
315
- tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
316
- hideVerticalResizeHandle: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
317
- hideTrackSelectorButton: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
318
- lockedFitToWindow: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
319
- disableImportForm: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
320
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
321
- displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Region[], Region[], Region[]>, [undefined]>;
322
- scrollX: import("mobx-state-tree").IType<number | undefined, number, number>;
323
- scrollY: import("mobx-state-tree").IType<number | undefined, number, number>;
324
- minimumRadiusPx: import("mobx-state-tree").IType<number | undefined, number, number>;
325
- spacingPx: import("mobx-state-tree").IType<number | undefined, number, number>;
326
- paddingPx: import("mobx-state-tree").IType<number | undefined, number, number>;
327
- lockedPaddingPx: import("mobx-state-tree").IType<number | undefined, number, number>;
328
- minVisibleWidth: import("mobx-state-tree").IType<number | undefined, number, number>;
329
- minimumBlockWidth: import("mobx-state-tree").IType<number | undefined, number, number>;
330
- trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
209
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"CircularView">;
210
+ offsetRadians: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
211
+ bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
212
+ tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
213
+ hideVerticalResizeHandle: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
214
+ hideTrackSelectorButton: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
215
+ lockedFitToWindow: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
216
+ disableImportForm: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
217
+ height: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
218
+ displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Region[], Region[], Region[]>, [undefined]>;
219
+ scrollX: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
220
+ scrollY: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
221
+ minimumRadiusPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
222
+ spacingPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
223
+ paddingPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
224
+ lockedPaddingPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
225
+ minVisibleWidth: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
226
+ minimumBlockWidth: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
227
+ trackSelectorType: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
228
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-circular-view/src/CircularView/model").CircularViewInit | undefined, import("@jbrowse/plugin-circular-view/src/CircularView/model").CircularViewInit | undefined, import("@jbrowse/plugin-circular-view/src/CircularView/model").CircularViewInit | undefined>;
331
229
  }, {
332
230
  width: number;
333
231
  } & {
@@ -338,7 +236,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
338
236
  setMinimized(flag: boolean): void;
339
237
  } & {
340
238
  volatileWidth: number | undefined;
341
- error: unknown;
239
+ volatileError: unknown;
342
240
  } & {
343
241
  readonly width: number;
344
242
  readonly visibleSection: {
@@ -363,6 +261,13 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
363
261
  readonly elidedRegions: import("@jbrowse/plugin-circular-view/src/CircularView/slices").SliceRegion[];
364
262
  readonly assemblyNames: string[];
365
263
  readonly initialized: boolean;
264
+ readonly assemblyErrors: string;
265
+ readonly error: unknown;
266
+ readonly loadingMessage: "Loading" | undefined;
267
+ readonly hasSomethingToShow: boolean;
268
+ readonly showLoading: boolean;
269
+ readonly showView: boolean;
270
+ readonly showImportForm: boolean;
366
271
  } & {
367
272
  readonly staticSlices: import("@jbrowse/plugin-circular-view/src/CircularView/slices").Slice[];
368
273
  } & {
@@ -380,18 +285,47 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
380
285
  zoomOutButton(): void;
381
286
  setBpPerPx(newVal: number): void;
382
287
  setModelViewWhenAdjust(secondCondition: boolean): void;
383
- setDisplayedRegions(regions: import("mobx-state-tree").SnapshotOrInstance<typeof import("@jbrowse/core/util/types/mst").Region>[]): void;
288
+ setDisplayedRegions(regions: Region[]): void;
384
289
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
385
- toggleTrack(trackId: string): boolean;
290
+ toggleTrack(trackId: string): void;
386
291
  setError(error: unknown): void;
292
+ setInit(init?: import("@jbrowse/plugin-circular-view/src/CircularView/model").CircularViewInit): void;
387
293
  showTrack(trackId: string, initialSnapshot?: {}): void;
388
294
  addTrackConf(configuration: import("@jbrowse/core/configuration").AnyConfigurationModel, initialSnapshot?: {}): void;
389
- hideTrack(trackId: string): number;
295
+ hideTrack(trackId: string): void;
390
296
  toggleFitToWindowLock(): boolean;
391
- exportSvg(opts?: import("@jbrowse/plugin-circular-view/src/CircularView/model").ExportSvgOptions): Promise<void>;
297
+ exportSvg(opts?: import("@jbrowse/plugin-circular-view").ExportSvgOptions): Promise<void>;
298
+ } & {
299
+ afterAttach(): void;
392
300
  } & {
393
301
  menuItems(): import("@jbrowse/core/ui").MenuItem[];
394
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
302
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
303
+ id: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
304
+ displayName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
305
+ minimized: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
306
+ } & {
307
+ type: import("@jbrowse/mobx-state-tree").ISimpleType<"CircularView">;
308
+ offsetRadians: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
309
+ bpPerPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
310
+ tracks: import("@jbrowse/mobx-state-tree").IArrayType<import("@jbrowse/mobx-state-tree").IAnyType>;
311
+ hideVerticalResizeHandle: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
312
+ hideTrackSelectorButton: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
313
+ lockedFitToWindow: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
314
+ disableImportForm: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
315
+ height: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<number>, [undefined]>;
316
+ displayedRegions: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").IType<Region[], Region[], Region[]>, [undefined]>;
317
+ scrollX: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
318
+ scrollY: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
319
+ minimumRadiusPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
320
+ spacingPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
321
+ paddingPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
322
+ lockedPaddingPx: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
323
+ minVisibleWidth: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
324
+ minimumBlockWidth: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
325
+ trackSelectorType: import("@jbrowse/mobx-state-tree").IType<string | undefined, string, string>;
326
+ init: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/plugin-circular-view/src/CircularView/model").CircularViewInit | undefined, import("@jbrowse/plugin-circular-view/src/CircularView/model").CircularViewInit | undefined, import("@jbrowse/plugin-circular-view/src/CircularView/model").CircularViewInit | undefined>;
327
+ }>>, [undefined]>;
328
+ init: import("@jbrowse/mobx-state-tree").IType<SvInspectorViewInit | undefined, SvInspectorViewInit | undefined, SvInspectorViewInit | undefined>;
395
329
  }, {
396
330
  width: number;
397
331
  } & {
@@ -402,32 +336,32 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
402
336
  setMinimized(flag: boolean): void;
403
337
  } & {
404
338
  width: number;
405
- SpreadsheetViewReactComponent: import("react").LazyExoticComponent<import("react").ComponentClass<{
339
+ SpreadsheetViewReactComponent: (import("react").ComponentClass<{
406
340
  model: any;
407
- session?: import("mobx-state-tree").IAnyStateTreeNode;
341
+ session?: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode;
408
342
  }, any> | import("react").FunctionComponent<{
409
343
  model: any;
410
- session?: import("mobx-state-tree").IAnyStateTreeNode;
411
- }>> | (import("react").ComponentClass<{
344
+ session?: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode;
345
+ }>) | import("react").LazyExoticComponent<import("react").ComponentClass<{
412
346
  model: any;
413
- session?: import("mobx-state-tree").IAnyStateTreeNode;
347
+ session?: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode;
414
348
  }, any> | import("react").FunctionComponent<{
415
349
  model: any;
416
- session?: import("mobx-state-tree").IAnyStateTreeNode;
417
- }>);
418
- CircularViewReactComponent: import("react").LazyExoticComponent<import("react").ComponentClass<{
350
+ session?: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode;
351
+ }>>;
352
+ CircularViewReactComponent: (import("react").ComponentClass<{
419
353
  model: any;
420
- session?: import("mobx-state-tree").IAnyStateTreeNode;
354
+ session?: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode;
421
355
  }, any> | import("react").FunctionComponent<{
422
356
  model: any;
423
- session?: import("mobx-state-tree").IAnyStateTreeNode;
424
- }>> | (import("react").ComponentClass<{
357
+ session?: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode;
358
+ }>) | import("react").LazyExoticComponent<import("react").ComponentClass<{
425
359
  model: any;
426
- session?: import("mobx-state-tree").IAnyStateTreeNode;
360
+ session?: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode;
427
361
  }, any> | import("react").FunctionComponent<{
428
362
  model: any;
429
- session?: import("mobx-state-tree").IAnyStateTreeNode;
430
- }>);
363
+ session?: import("@jbrowse/mobx-state-tree").IAnyStateTreeNode;
364
+ }>>;
431
365
  circularViewOptionsBarHeight: number;
432
366
  } & {
433
367
  readonly assemblyName: string | undefined;
@@ -440,13 +374,14 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
440
374
  readonly featureRefNames: any[];
441
375
  readonly currentAssembly: ({
442
376
  configuration: any;
443
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
377
+ } & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & {
444
378
  error: unknown;
445
379
  loadingP: Promise<void> | undefined;
446
380
  volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
447
381
  refNameAliases: {
448
382
  [x: string]: string;
449
383
  } | undefined;
384
+ canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
450
385
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
451
386
  } & {
452
387
  getConf(arg: string): any;
@@ -470,23 +405,25 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
470
405
  readonly refNames: string[] | undefined;
471
406
  } & {
472
407
  getCanonicalRefName(refName: string): string | undefined;
473
- getCanonicalRefName2(asmName: string): string;
408
+ getCanonicalRefName2(refName: string): string;
474
409
  getRefNameColor(refName: string): string | undefined;
475
410
  isValidRefName(refName: string): boolean;
411
+ getSeqAdapterRefName(canonicalRefName: string): string;
476
412
  } & {
477
413
  setLoaded({ regions, refNameAliases, cytobands, }: {
478
- regions: import("@jbrowse/core/util").Region[];
414
+ regions: Region[];
479
415
  refNameAliases: {
480
416
  [x: string]: string;
481
417
  };
482
418
  cytobands: import("@jbrowse/core/util").Feature[];
483
419
  }): void;
484
420
  setError(e: unknown): void;
485
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
421
+ setRegions(regions: Region[]): void;
486
422
  setRefNameAliases(aliases: {
487
423
  [x: string]: string;
488
424
  }): void;
489
425
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
426
+ setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
490
427
  setLoadingP(p?: Promise<void>): void;
491
428
  load(): Promise<void>;
492
429
  loadPre(): Promise<void>;
@@ -505,8 +442,8 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
505
442
  [x: string]: string;
506
443
  }>;
507
444
  afterCreate(): void;
508
- } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
509
- configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
445
+ } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{
446
+ configuration: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").IReferenceType<import("@jbrowse/mobx-state-tree").IAnyType>>;
510
447
  }, {
511
448
  error: unknown;
512
449
  loadingP: Promise<void> | undefined;
@@ -514,6 +451,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
514
451
  refNameAliases: {
515
452
  [x: string]: string;
516
453
  } | undefined;
454
+ canonicalToSeqAdapterRefNames: Record<string, string> | undefined;
517
455
  cytobands: import("@jbrowse/core/util").Feature[] | undefined;
518
456
  } & {
519
457
  getConf(arg: string): any;
@@ -537,23 +475,25 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
537
475
  readonly refNames: string[] | undefined;
538
476
  } & {
539
477
  getCanonicalRefName(refName: string): string | undefined;
540
- getCanonicalRefName2(asmName: string): string;
478
+ getCanonicalRefName2(refName: string): string;
541
479
  getRefNameColor(refName: string): string | undefined;
542
480
  isValidRefName(refName: string): boolean;
481
+ getSeqAdapterRefName(canonicalRefName: string): string;
543
482
  } & {
544
483
  setLoaded({ regions, refNameAliases, cytobands, }: {
545
- regions: import("@jbrowse/core/util").Region[];
484
+ regions: Region[];
546
485
  refNameAliases: {
547
486
  [x: string]: string;
548
487
  };
549
488
  cytobands: import("@jbrowse/core/util").Feature[];
550
489
  }): void;
551
490
  setError(e: unknown): void;
552
- setRegions(regions: import("@jbrowse/core/util").Region[]): void;
491
+ setRegions(regions: Region[]): void;
553
492
  setRefNameAliases(aliases: {
554
493
  [x: string]: string;
555
494
  }): void;
556
495
  setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
496
+ setCanonicalToSeqAdapterRefNames(map: Record<string, string>): void;
557
497
  setLoadingP(p?: Promise<void>): void;
558
498
  load(): Promise<void>;
559
499
  loadPre(): Promise<void>;
@@ -572,7 +512,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
572
512
  [x: string]: string;
573
513
  }>;
574
514
  afterCreate(): void;
575
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
515
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>) | undefined;
576
516
  readonly canonicalFeatureRefNameSet: Set<any>;
577
517
  readonly featuresCircularTrackConfiguration: {
578
518
  type: string;
@@ -597,6 +537,7 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
597
537
  setHeight(newHeight: number): number;
598
538
  setDisplayedRegions(regions: Region[]): void;
599
539
  setOnlyDisplayRelevantRegionsInCircularView(val: boolean): void;
540
+ setInit(init?: SvInspectorViewInit): void;
600
541
  } & {
601
542
  menuItems(): {
602
543
  label: string;
@@ -608,159 +549,54 @@ declare function SvInspectorViewF(pluginManager: PluginManager): import("mobx-st
608
549
  } & {
609
550
  resizeHeight(distance: number): number;
610
551
  afterAttach(): void;
611
- }, import("mobx-state-tree")._NotCustomized, {
552
+ }, import("@jbrowse/mobx-state-tree")._NotCustomized, Omit<{
553
+ height: number;
612
554
  id: string;
613
555
  type: "SvInspectorView";
614
- height: number;
615
556
  displayName: string | undefined;
616
557
  minimized: boolean;
617
558
  onlyDisplayRelevantRegionsInCircularView: boolean;
618
- spreadsheetView: import("mobx-state-tree").ModelSnapshotType<{
619
- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
620
- displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
621
- minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
622
- } & {
623
- type: import("mobx-state-tree").ISimpleType<"SpreadsheetView">;
624
- offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
625
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
626
- hideVerticalResizeHandle: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
627
- hideFilterControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
628
- importWizard: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
629
- fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
630
- hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
631
- columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
632
- selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
633
- cachedFileLocation: import("mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
634
- }, {
635
- fileTypes: string[];
636
- fileSource: any;
637
- error: unknown;
638
- loading: boolean;
639
- } & {
640
- readonly isReadyToOpen: any;
641
- readonly fileName: any;
642
- readonly requiresUnzip: any;
643
- isValidRefName(refName: string, assemblyName?: string): boolean;
644
- tracksForAssembly(selectedAssembly: string): {
645
- track: {
646
- [x: string]: any;
647
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
648
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
649
- [x: string]: any;
650
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
651
- setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
652
- [x: string]: any;
653
- } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
654
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
655
- } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
656
- label: string;
657
- assemblyNames: any;
658
- type: string;
659
- loc: import("@jbrowse/core/util").FileLocation;
660
- }[];
661
- } & {
662
- setSelectedAssemblyName(s: string): void;
663
- setFileSource(newSource: unknown): void;
664
- setColumnNameLineNumber(newnumber: number): void;
665
- setFileType(typeName: string): void;
666
- setError(error: unknown): void;
667
- setLoading(arg: boolean): void;
668
- cancelButton(): void;
669
- setCachedFileHandle(arg: import("@jbrowse/core/util").FileLocation): void;
670
- } & {
671
- import(assemblyName: string): Promise<void>;
672
- } & {
673
- afterAttach(): void;
674
- }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
675
- spreadsheet: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IModelType<{
676
- rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
677
- columns: import("mobx-state-tree").IType<{
678
- name: string;
679
- }[], {
680
- name: string;
681
- }[], {
682
- name: string;
683
- }[]>;
684
- assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
685
- visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
686
- }, {
687
- visibleRowFlags: Record<number, boolean> | undefined;
688
- } & {
689
- readonly rows: {
690
- id: number;
691
- feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
692
- }[] | undefined;
693
- readonly initialized: boolean | undefined;
694
- } & {
695
- readonly dataGridColumns: ({
696
- field: string;
697
- width: number;
698
- type: "number" | undefined;
699
- } | {
700
- field: string;
701
- width: number;
702
- renderCell: ({ row }: import("@mui/x-data-grid").GridRenderCellParams<{
703
- id: number;
704
- feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
705
- }, any, any, import("@mui/x-data-grid").GridTreeNodeWithRender>) => import("react/jsx-runtime").JSX.Element | "N/A";
706
- type?: undefined;
707
- valueGetter?: undefined;
708
- valueFormatter?: undefined;
709
- } | {
710
- field: string;
711
- type: "number";
712
- width: number;
713
- valueGetter: (_val: unknown, row: {
714
- feature?: import("@jbrowse/core/util").SimpleFeatureSerialized;
715
- }) => number | undefined;
716
- valueFormatter: (arg: never) => string;
717
- renderCell?: undefined;
718
- })[] | undefined;
719
- } & {
720
- readonly visibleRows: {
721
- id: number;
722
- feature: import("@jbrowse/core/util").SimpleFeatureSerialized | undefined;
723
- }[] | undefined;
724
- } & {
725
- setVisibleRows(arg?: Record<number, boolean>): void;
726
- setVisibleColumns(arg: Record<string, boolean>): void;
727
- }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
728
- rowSet: import("mobx-state-tree").IType<import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined, import("@jbrowse/plugin-spreadsheet-view/src/SpreadsheetView/SpreadsheetModel").RowSet | undefined>;
729
- columns: import("mobx-state-tree").IType<{
730
- name: string;
731
- }[], {
732
- name: string;
733
- }[], {
734
- name: string;
735
- }[]>;
736
- assemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
737
- visibleColumns: import("mobx-state-tree").IType<Record<string, boolean>, Record<string, boolean>, Record<string, boolean>>;
738
- }>>, import("mobx-state-tree")._NotCustomized>>;
739
- }> | {
559
+ spreadsheetView: {
560
+ importWizard: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
561
+ fileType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
562
+ hasColumnNameLine: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
563
+ columnNameLineNumber: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
564
+ selectedAssemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
565
+ cachedFileLocation: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
566
+ }>;
740
567
  spreadsheet: {
568
+ assemblyName: string | undefined;
741
569
  columns: {
742
570
  name: string;
743
571
  }[];
744
- assemblyName: string | undefined;
745
572
  visibleColumns: Record<string, boolean>;
746
573
  };
574
+ height: number;
747
575
  id: string;
748
576
  type: "SpreadsheetView";
749
- height: number;
750
577
  displayName: string | undefined;
751
578
  minimized: boolean;
752
- hideVerticalResizeHandle: boolean;
753
579
  offsetPx: number;
580
+ hideVerticalResizeHandle: boolean;
754
581
  hideFilterControls: boolean;
755
- importWizard: import("mobx-state-tree").ModelSnapshotType<{
756
- fileType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
757
- hasColumnNameLine: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
758
- columnNameLineNumber: import("mobx-state-tree").IType<number | undefined, number, number>;
759
- selectedAssemblyName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
760
- cachedFileLocation: import("mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
582
+ } | {
583
+ importWizard: import("@jbrowse/mobx-state-tree").ModelSnapshotType<{
584
+ fileType: import("@jbrowse/mobx-state-tree").IOptionalIType<import("@jbrowse/mobx-state-tree").ISimpleType<string>, [undefined]>;
585
+ hasColumnNameLine: import("@jbrowse/mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
586
+ columnNameLineNumber: import("@jbrowse/mobx-state-tree").IType<number | undefined, number, number>;
587
+ selectedAssemblyName: import("@jbrowse/mobx-state-tree").IMaybe<import("@jbrowse/mobx-state-tree").ISimpleType<string>>;
588
+ cachedFileLocation: import("@jbrowse/mobx-state-tree").IType<import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined, import("@jbrowse/core/util").FileLocation | undefined>;
761
589
  }>;
590
+ height: number;
591
+ id: string;
592
+ type: "SpreadsheetView";
593
+ displayName: string | undefined;
594
+ minimized: boolean;
595
+ offsetPx: number;
596
+ hideVerticalResizeHandle: boolean;
597
+ hideFilterControls: boolean;
762
598
  };
763
- }>;
599
+ }, symbol>>;
764
600
  export type SvInspectorViewStateModel = ReturnType<typeof SvInspectorViewF>;
765
601
  export type SvInspectorViewModel = Instance<SvInspectorViewStateModel>;
766
602
  export default SvInspectorViewF;