@jbrowse/plugin-sv-inspector 3.7.0 → 4.0.0

package/esm/LaunchSvInspectorView/index.js

@@ -1,18 +1,11 @@
 export default function LaunchSvInspectorViewF(pluginManager) {
     pluginManager.addToExtensionPoint('LaunchView-SvInspectorView', async ({ session, assembly, uri, fileType, }) => {
-        var _a, _b;
-        const view = session.addView('SvInspectorView');
-        const exts = uri.split('.');
-        let ext = (_a = exts.pop()) === null || _a === void 0 ? void 0 : _a.toUpperCase();
-        if (ext === 'GZ') {
-            ext = (_b = exts.pop()) === null || _b === void 0 ? void 0 : _b.toUpperCase();
-        }
-        view.spreadsheetView.importWizard.setFileType(fileType || ext || '');
-        view.spreadsheetView.importWizard.setSelectedAssemblyName(assembly);
-        view.spreadsheetView.importWizard.setFileSource({
-            uri,
-            locationType: 'UriLocation',
+        session.addView('SvInspectorView', {
+            init: {
+                assembly,
+                uri,
+                fileType,
+            },
         });
-        await view.spreadsheetView.importWizard.import(assembly);
     });
 }

package/esm/SvInspectorView/BreakpointSplitViewChoiceDialog.d.ts

@@ -0,0 +1 @@
+export { BreakpointSplitViewChoiceDialog as default } from '@jbrowse/sv-core';

package/esm/SvInspectorView/BreakpointSplitViewChoiceDialog.js

@@ -0,0 +1 @@
+export { BreakpointSplitViewChoiceDialog as default } from '@jbrowse/sv-core';

package/esm/SvInspectorView/components/CircularViewOptions.d.ts

@@ -1,4 +1,4 @@
-import type { SvInspectorViewModel } from '../model';
+import type { SvInspectorViewModel } from '../model.ts';
 declare const CircularViewOptions: ({ svInspector, }: {
     svInspector: SvInspectorViewModel;
 }) => import("react/jsx-runtime").JSX.Element;

package/esm/SvInspectorView/components/CircularViewOptions.js

@@ -1,13 +1,13 @@
 import { jsx as _jsx } from "react/jsx-runtime";
+import { makeStyles } from '@jbrowse/core/util/tss-react';
 import { Checkbox, FormControlLabel } from '@mui/material';
 import { observer } from 'mobx-react';
-import { makeStyles } from 'tss-react/mui';
 const useStyles = makeStyles()(theme => ({
     circularViewOptions: {
         padding: theme.spacing(1),
     },
 }));
-const CircularViewOptions = observer(function ({ svInspector, }) {
+const CircularViewOptions = observer(function CircularViewOptions({ svInspector, }) {
     const { classes } = useStyles();
     return (_jsx("div", { className: classes.circularViewOptions, style: { height: svInspector.circularViewOptionsBarHeight }, children: _jsx(FormControlLabel, { control: _jsx(Checkbox, { checked: svInspector.onlyDisplayRelevantRegionsInCircularView, onChange: e => {
                     svInspector.setOnlyDisplayRelevantRegionsInCircularView(e.target.checked);

package/esm/SvInspectorView/components/SvInspectorView.d.ts

@@ -1,4 +1,4 @@
-import type { SvInspectorViewModel } from '../model';
+import type { SvInspectorViewModel } from '../model.ts';
 declare const SvInspectorView: ({ model, }: {
     model: SvInspectorViewModel;
 }) => import("react/jsx-runtime").JSX.Element;

package/esm/SvInspectorView/components/SvInspectorView.js

@@ -1,8 +1,8 @@
 import { jsx as _jsx, jsxs as _jsxs, Fragment as _Fragment } from "react/jsx-runtime";
 import { ResizeHandle } from '@jbrowse/core/ui';
+import { makeStyles } from '@jbrowse/core/util/tss-react';
 import { observer } from 'mobx-react';
-import { makeStyles } from 'tss-react/mui';
-import CircularViewOptions from './CircularViewOptions';
+import CircularViewOptions from "./CircularViewOptions.js";
 const useStyles = makeStyles()(theme => ({
     resizeHandleVert: {
         background: theme.palette.action.selected,
@@ -16,9 +16,6 @@ const useStyles = makeStyles()(theme => ({
         boxSizing: 'border-box',
         borderTop: '1px solid #fafafa',
     },
-    viewControls: {
-        margin: 0,
-    },
     viewsContainer: {
         display: 'flex',
     },
@@ -26,7 +23,7 @@ const useStyles = makeStyles()(theme => ({
         overflow: 'hidden',
     },
 }));
-const SvInspectorView = observer(function ({ model, }) {
+const SvInspectorView = observer(function SvInspectorView({ model, }) {
     const { classes } = useStyles();
     const { SpreadsheetViewReactComponent, CircularViewReactComponent, showCircularView, } = model;
     return (_jsxs("div", { className: classes.container, children: [_jsxs("div", { className: classes.viewsContainer, children: [_jsx("div", { style: {

package/esm/SvInspectorView/index.js

@@ -1,30 +1,32 @@
 import { lazy } from 'react';
 import ViewType from '@jbrowse/core/pluggableElementTypes/ViewType';
 import { getContainingView, getSession } from '@jbrowse/core/util';
-import { navToMultiLevelBreak } from '@jbrowse/sv-core';
-import { getParent } from 'mobx-state-tree';
-import stateModelFactory from './model';
+import { getParent } from '@jbrowse/mobx-state-tree';
+import stateModelFactory from "./model.js";
+const BreakpointSplitViewChoiceDialog = lazy(() => import("./BreakpointSplitViewChoiceDialog.js"));
 function defaultOnChordClick(feature, chordTrack) {
-    ;
-    (async () => {
-        const session = getSession(chordTrack);
-        try {
-            session.setSelection(feature);
-            const view = getContainingView(chordTrack);
-            const parentView = getParent(view);
-            const stableViewId = `${parentView.id}_spawned`;
-            await navToMultiLevelBreak({
-                assemblyName: view.assemblyNames[0],
+    const session = getSession(chordTrack);
+    try {
+        session.setSelection(feature);
+        const view = getContainingView(chordTrack);
+        const parentView = getParent(view);
+        const stableViewId = `${parentView.id}_spawned`;
+        const assemblyName = view.assemblyNames[0];
+        session.queueDialog(handleClose => [
+            BreakpointSplitViewChoiceDialog,
+            {
+                handleClose,
                 session,
-                stableViewId,
                 feature,
-            });
-        }
-        catch (e) {
-            console.error(e);
-            session.notifyError(`${e}`, e);
-        }
-    })();
+                stableViewId,
+                assemblyName,
+            },
+        ]);
+    }
+    catch (e) {
+        console.error(e);
+        session.notifyError(`${e}`, e);
+    }
 }
 export default function SvInspectorViewF(pluginManager) {
     pluginManager.jexl.addFunction('defaultOnChordClick', defaultOnChordClick);
@@ -34,7 +36,7 @@ export default function SvInspectorViewF(pluginManager) {
             name: 'SvInspectorView',
             displayName: 'SV inspector',
             stateModel,
-            ReactComponent: lazy(() => import('./components/SvInspectorView')),
+            ReactComponent: lazy(() => import("./components/SvInspectorView.js")),
         });
     });
 }