@jbrowse/plugin-sequence 1.7.3 → 1.7.4

package/dist/GCContentAdapter/GCContentAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -37,41 +37,41 @@ var _operators = require("rxjs/operators");
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
-  (0, _inherits2["default"])(_default, _BaseFeatureDataAdapt);
+  (0, _inherits2.default)(_default, _BaseFeatureDataAdapt);
 
   var _super = _createSuper(_default);
 
   function _default() {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, _default);
+    (0, _classCallCheck2.default)(this, _default);
 
     for (var _len = arguments.length, args = new Array(_len), _key = 0; _key < _len; _key++) {
       args[_key] = arguments[_key];
     }
 
     _this = _super.call.apply(_super, [this].concat(args));
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "windowSize", 1000);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "windowDelta", 1000);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "gcMode", 'content');
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "windowSize", 1000);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "windowDelta", 1000);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "gcMode", 'content');
     return _this;
   }
 
-  (0, _createClass2["default"])(_default, [{
+  (0, _createClass2.default)(_default, [{
     key: "configure",
     value: function () {
-      var _configure = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+      var _configure = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
         var _this$getSubAdapter;
 
         var sequenceAdapter, dataAdapter;
-        return _regenerator["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -110,9 +110,9 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   }, {
     key: "getRefNames",
     value: function () {
-      var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
+      var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
         var sequenceAdapter;
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -152,11 +152,11 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
       this.windowDelta = 1000;
       this.gcMode = 'content';
       return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(observer) {
+        var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(observer) {
           var _feats$;
 
           var sequenceAdapter, hw, f, queryStart, queryEnd, ret, feats, residues, i, r, nc, ng, len, j, pos, score;
-          return _regenerator["default"].wrap(function _callee3$(_context3) {
+          return _regenerator.default.wrap(function _callee3$(_context3) {
             while (1) {
               switch (_context3.prev = _context3.next) {
                 case 0:
@@ -219,7 +219,7 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
                       score = (ng - nc) / (ng + nc || 1);
                     }
 
-                    observer.next(new _simpleFeature["default"]({
+                    observer.next(new _simpleFeature.default({
                       uniqueId: "".concat(_this2.id, "_").concat(pos + i),
                       start: pos + i,
                       end: pos + i + _this2.windowDelta,
@@ -257,5 +257,5 @@ var _default = /*#__PURE__*/function (_BaseFeatureDataAdapt) {
   return _default;
 }(_BaseAdapter.BaseFeatureDataAdapter);
 
-exports["default"] = _default;
-(0, _defineProperty2["default"])(_default, "capabilities", ['hasLocalStats']);
+exports.default = _default;
+(0, _defineProperty2.default)(_default, "capabilities", ['hasLocalStats']);

package/dist/GCContentAdapter/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -15,4 +15,4 @@ var _default = function _default(pluginManager) {
   });
 };
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/GCContentAdapter/index.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _typeof2 = _interopRequireDefault(require("@babel/runtime/helpers/typeof"));
 
@@ -13,19 +13,19 @@ var _configSchema = _interopRequireDefault(require("./configSchema"));
 
 function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
 
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2["default"])(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
+function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || (0, _typeof2.default)(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
 
 var _default = function _default(pluginManager) {
   return {
-    configSchema: pluginManager.load(_configSchema["default"]),
+    configSchema: pluginManager.load(_configSchema.default),
     getAdapterClass: function getAdapterClass() {
       return Promise.resolve().then(function () {
         return _interopRequireWildcard(require('./GCContentAdapter'));
       }).then(function (r) {
-        return r["default"];
+        return r.default;
       });
     }
   };
 };
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -43,31 +43,31 @@ var _QuickLRU = _interopRequireDefault(require("@jbrowse/core/util/QuickLRU"));
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var _default = /*#__PURE__*/function (_BaseSequenceAdapter) {
-  (0, _inherits2["default"])(_default, _BaseSequenceAdapter);
+  (0, _inherits2.default)(_default, _BaseSequenceAdapter);
 
   var _super = _createSuper(_default);
 
   function _default(config, getSubAdapter, pluginManager) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, _default);
+    (0, _classCallCheck2.default)(this, _default);
     _this = _super.call(this, config, getSubAdapter, pluginManager);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "fasta", void 0);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "seqCache", new _abortablePromiseCache["default"]({
-      cache: new _QuickLRU["default"]({
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "fasta", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "seqCache", new _abortablePromiseCache.default({
+      cache: new _QuickLRU.default({
         maxSize: 200
       }),
       fill: function () {
-        var _fill = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(args, signal) {
+        var _fill = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(args, signal) {
           var refName, start, end;
-          return _regenerator["default"].wrap(function _callee$(_context) {
+          return _regenerator.default.wrap(function _callee$(_context) {
             while (1) {
               switch (_context.prev = _context.next) {
                 case 0:
@@ -101,7 +101,7 @@ var _default = /*#__PURE__*/function (_BaseSequenceAdapter) {
     return _this;
   }
 
-  (0, _createClass2["default"])(_default, [{
+  (0, _createClass2.default)(_default, [{
     key: "getRefNames",
     value: function getRefNames(opts) {
       return this.fasta.getSequenceNames(opts);
@@ -109,9 +109,9 @@ var _default = /*#__PURE__*/function (_BaseSequenceAdapter) {
   }, {
     key: "getRegions",
     value: function () {
-      var _getRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2(opts) {
+      var _getRegions = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2(opts) {
         var seqSizes;
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -151,9 +151,9 @@ var _default = /*#__PURE__*/function (_BaseSequenceAdapter) {
           start = region.start,
           end = region.end;
       return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3(observer) {
+        var _ref = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3(observer) {
           var size, regionEnd, chunks, chunkSize, s, e, chunkStart, r, seq;
-          return _regenerator["default"].wrap(function _callee3$(_context3) {
+          return _regenerator.default.wrap(function _callee3$(_context3) {
             while (1) {
               switch (_context3.prev = _context3.next) {
                 case 0:
@@ -184,7 +184,7 @@ var _default = /*#__PURE__*/function (_BaseSequenceAdapter) {
                   seq = _context3.sent.join('').slice(start - s).slice(0, end - start);
 
                   if (seq) {
-                    observer.next(new _simpleFeature["default"]({
+                    observer.next(new _simpleFeature.default({
                       id: "".concat(refName, " ").concat(start, "-").concat(regionEnd),
                       data: {
                         refName: refName,
@@ -225,4 +225,4 @@ var _default = /*#__PURE__*/function (_BaseSequenceAdapter) {
   return _default;
 }(_BaseAdapter.BaseSequenceAdapter);
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/IndexedFastaAdapter/IndexedFastaAdapter.test.js

@@ -12,13 +12,13 @@ var _IndexedFastaAdapter = _interopRequireDefault(require("./IndexedFastaAdapter
 
 var _configSchema = _interopRequireDefault(require("./configSchema"));
 
-test('adapter can fetch sequence from volvox.fa', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('adapter can fetch sequence from volvox.fa', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var adapter, features, featuresArray, features2, featuresArray2, features3, featuresArray3;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
-          adapter = new _IndexedFastaAdapter["default"](_configSchema["default"].create({
+          adapter = new _IndexedFastaAdapter.default(_configSchema.default.create({
             fastaLocation: {
               localPath: require.resolve('../../test_data/volvox.fa'),
               locationType: 'LocalPathLocation'

package/dist/IndexedFastaAdapter/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -26,4 +26,4 @@ var _default = (0, _configuration.ConfigurationSchema)('IndexedFastaAdapter', {
   explicitlyTyped: true
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/IndexedFastaAdapter/index.js

@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });
 

package/dist/LinearReferenceSequenceDisplay/model.js

@@ -19,15 +19,15 @@ var _util = require("@jbrowse/core/util");
 
 function ownKeys(object, enumerableOnly) { var keys = Object.keys(object); if (Object.getOwnPropertySymbols) { var symbols = Object.getOwnPropertySymbols(object); enumerableOnly && (symbols = symbols.filter(function (sym) { return Object.getOwnPropertyDescriptor(object, sym).enumerable; })), keys.push.apply(keys, symbols); } return keys; }
 
-function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
+function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2.default)(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
 
 function modelFactory(configSchema) {
   return _mobxStateTree.types.compose('LinearReferenceSequenceDisplay', _pluginLinearGenomeView.BaseLinearDisplay, _mobxStateTree.types.model({
     type: _mobxStateTree.types.literal('LinearReferenceSequenceDisplay'),
     configuration: (0, _configuration.ConfigurationReference)(configSchema),
-    showForward: _mobxStateTree.types.optional(_mobxStateTree.types["boolean"], true),
-    showReverse: _mobxStateTree.types.optional(_mobxStateTree.types["boolean"], true),
-    showTranslation: _mobxStateTree.types.optional(_mobxStateTree.types["boolean"], true),
+    showForward: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, true),
+    showReverse: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, true),
+    showTranslation: _mobxStateTree.types.optional(_mobxStateTree.types.boolean, true),
     height: 180
   })).views(function (self) {
     var superRenderProps = self.renderProps;

package/dist/TwoBitAdapter/TwoBitAdapter.js

@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
 
@@ -39,22 +39,22 @@ var _twobit = require("@gmod/twobit");
 
 var _configuration = require("@jbrowse/core/configuration");
 
-function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
+function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
 
 function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
 
 var TwoBitAdapter = /*#__PURE__*/function (_BaseSequenceAdapter) {
-  (0, _inherits2["default"])(TwoBitAdapter, _BaseSequenceAdapter);
+  (0, _inherits2.default)(TwoBitAdapter, _BaseSequenceAdapter);
 
   var _super = _createSuper(TwoBitAdapter);
 
   function TwoBitAdapter(config, getSubAdapter, pluginManager) {
     var _this;
 
-    (0, _classCallCheck2["default"])(this, TwoBitAdapter);
+    (0, _classCallCheck2.default)(this, TwoBitAdapter);
     _this = _super.call(this, config, getSubAdapter, pluginManager);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "twobit", void 0);
-    (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "chromSizesData", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "twobit", void 0);
+    (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "chromSizesData", void 0);
     _this.chromSizesData = _this.initChromSizes();
     _this.twobit = new _twobit.TwoBitFile({
       filehandle: (0, _io.openLocation)((0, _configuration.readConfObject)(config, 'twoBitLocation'), _this.pluginManager)
@@ -62,14 +62,14 @@ var TwoBitAdapter = /*#__PURE__*/function (_BaseSequenceAdapter) {
     return _this;
   }
 
-  (0, _createClass2["default"])(TwoBitAdapter, [{
+  (0, _createClass2.default)(TwoBitAdapter, [{
     key: "initChromSizes",
     value: // the chromSizesData can be used to speed up loading since TwoBit has to do
     // many range requests at startup to perform the getRegions request
     function () {
-      var _initChromSizes = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+      var _initChromSizes = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
         var conf, file, data;
-        return _regenerator["default"].wrap(function _callee$(_context) {
+        return _regenerator.default.wrap(function _callee$(_context) {
           while (1) {
             switch (_context.prev = _context.next) {
               case 0:
@@ -92,7 +92,7 @@ var TwoBitAdapter = /*#__PURE__*/function (_BaseSequenceAdapter) {
                   return !!line.trim();
                 }).map(function (line) {
                   var _line$split = line.split('\t'),
-                      _line$split2 = (0, _slicedToArray2["default"])(_line$split, 2),
+                      _line$split2 = (0, _slicedToArray2.default)(_line$split, 2),
                       name = _line$split2[0],
                       length = _line$split2[1];
 
@@ -119,9 +119,9 @@ var TwoBitAdapter = /*#__PURE__*/function (_BaseSequenceAdapter) {
   }, {
     key: "getRefNames",
     value: function () {
-      var _getRefNames = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
+      var _getRefNames = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
         var chromSizesData;
-        return _regenerator["default"].wrap(function _callee2$(_context2) {
+        return _regenerator.default.wrap(function _callee2$(_context2) {
           while (1) {
             switch (_context2.prev = _context2.next) {
               case 0:
@@ -158,9 +158,9 @@ var TwoBitAdapter = /*#__PURE__*/function (_BaseSequenceAdapter) {
   }, {
     key: "getRegions",
     value: function () {
-      var _getRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee3() {
+      var _getRegions = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee3() {
         var chromSizesData, refSizes;
-        return _regenerator["default"].wrap(function _callee3$(_context3) {
+        return _regenerator.default.wrap(function _callee3$(_context3) {
           while (1) {
             switch (_context3.prev = _context3.next) {
               case 0:
@@ -226,9 +226,9 @@ var TwoBitAdapter = /*#__PURE__*/function (_BaseSequenceAdapter) {
           start = _ref.start,
           end = _ref.end;
       return (0, _rxjs.ObservableCreate)( /*#__PURE__*/function () {
-        var _ref2 = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee4(observer) {
+        var _ref2 = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee4(observer) {
           var size, regionEnd, seq;
-          return _regenerator["default"].wrap(function _callee4$(_context4) {
+          return _regenerator.default.wrap(function _callee4$(_context4) {
             while (1) {
               switch (_context4.prev = _context4.next) {
                 case 0:
@@ -245,7 +245,7 @@ var TwoBitAdapter = /*#__PURE__*/function (_BaseSequenceAdapter) {
                   seq = _context4.sent;
 
                   if (seq) {
-                    observer.next(new _simpleFeature["default"]({
+                    observer.next(new _simpleFeature.default({
                       id: "".concat(refName, " ").concat(start, "-").concat(regionEnd),
                       data: {
                         refName: refName,
@@ -286,4 +286,4 @@ var TwoBitAdapter = /*#__PURE__*/function (_BaseSequenceAdapter) {
   return TwoBitAdapter;
 }(_BaseAdapter.BaseSequenceAdapter);
 
-exports["default"] = TwoBitAdapter;
+exports.default = TwoBitAdapter;

package/dist/TwoBitAdapter/TwoBitAdapter.test.js

@@ -12,13 +12,13 @@ var _TwoBitAdapter = _interopRequireDefault(require("./TwoBitAdapter"));
 
 var _configSchema = _interopRequireDefault(require("./configSchema"));
 
-test('adapter can fetch features from volvox.2bit', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
+test('adapter can fetch features from volvox.2bit', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
   var adapter, features, featuresArray, features2, featuresArray2, features3, featuresArray3;
-  return _regenerator["default"].wrap(function _callee$(_context) {
+  return _regenerator.default.wrap(function _callee$(_context) {
     while (1) {
       switch (_context.prev = _context.next) {
         case 0:
-          adapter = new _TwoBitAdapter["default"](_configSchema["default"].create({
+          adapter = new _TwoBitAdapter.default(_configSchema.default.create({
             twoBitLocation: {
               localPath: require.resolve('../../test_data/volvox.2bit'),
               locationType: 'LocalPathLocation'
@@ -65,13 +65,13 @@ test('adapter can fetch features from volvox.2bit', /*#__PURE__*/(0, _asyncToGen
     }
   }, _callee);
 })));
-test('adapter can fetch regions from with chrom.sizes', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
+test('adapter can fetch regions from with chrom.sizes', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
   var adapter;
-  return _regenerator["default"].wrap(function _callee2$(_context2) {
+  return _regenerator.default.wrap(function _callee2$(_context2) {
     while (1) {
       switch (_context2.prev = _context2.next) {
         case 0:
-          adapter = new _TwoBitAdapter["default"](_configSchema["default"].create({
+          adapter = new _TwoBitAdapter.default(_configSchema.default.create({
             chromSizesLocation: {
               localPath: require.resolve('../../test_data/volvox.chrom.sizes'),
               locationType: 'LocalPathLocation'

package/dist/TwoBitAdapter/configSchema.js

@@ -3,7 +3,7 @@
 Object.defineProperty(exports, "__esModule", {
   value: true
 });
-exports["default"] = void 0;
+exports.default = void 0;
 
 var _configuration = require("@jbrowse/core/configuration");
 
@@ -27,4 +27,4 @@ var _default = (0, _configuration.ConfigurationSchema)('TwoBitAdapter', {
   explicitlyTyped: true
 });
 
-exports["default"] = _default;
+exports.default = _default;

package/dist/TwoBitAdapter/index.js

@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
 Object.defineProperty(exports, "configSchema", {
   enumerable: true,
   get: function get() {
-    return _configSchema["default"];
+    return _configSchema.default;
   }
 });