@jbrowse/plugin-sequence 1.7.3 → 1.7.4

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Files changed (28) hide show
  1. package/dist/BgzipFastaAdapter/BgzipFastaAdapter.js +7 -7
  2. package/dist/BgzipFastaAdapter/BgzipFastaAdapter.test.js +3 -3
  3. package/dist/BgzipFastaAdapter/configSchema.js +2 -2
  4. package/dist/BgzipFastaAdapter/index.js +1 -1
  5. package/dist/ChromSizesAdapter/ChromSizesAdapter.js +13 -13
  6. package/dist/ChromSizesAdapter/ChromSizesAdapter.test.js +3 -3
  7. package/dist/ChromSizesAdapter/configSchema.js +2 -2
  8. package/dist/ChromSizesAdapter/index.js +1 -1
  9. package/dist/DivSequenceRenderer/components/DivSequenceRendering.js +22 -22
  10. package/dist/DivSequenceRenderer/components/DivSequenceRendering.test.js +27 -27
  11. package/dist/DivSequenceRenderer/configSchema.js +2 -2
  12. package/dist/DivSequenceRenderer/index.js +2 -2
  13. package/dist/GCContentAdapter/GCContentAdapter.js +18 -18
  14. package/dist/GCContentAdapter/configSchema.js +2 -2
  15. package/dist/GCContentAdapter/index.js +5 -5
  16. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js +17 -17
  17. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.test.js +3 -3
  18. package/dist/IndexedFastaAdapter/configSchema.js +2 -2
  19. package/dist/IndexedFastaAdapter/index.js +1 -1
  20. package/dist/LinearReferenceSequenceDisplay/model.js +4 -4
  21. package/dist/TwoBitAdapter/TwoBitAdapter.js +18 -18
  22. package/dist/TwoBitAdapter/TwoBitAdapter.test.js +6 -6
  23. package/dist/TwoBitAdapter/configSchema.js +2 -2
  24. package/dist/TwoBitAdapter/index.js +1 -1
  25. package/dist/index.js +26 -26
  26. package/dist/index.test.js +2 -2
  27. package/dist/referenceSeqTrackConfig.js +1 -1
  28. package/package.json +3 -3
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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@@ -25,19 +25,19 @@ var _configuration = require("@jbrowse/core/configuration");
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  var _IndexedFastaAdapter = _interopRequireDefault(require("../IndexedFastaAdapter/IndexedFastaAdapter"));
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- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
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+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
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29
 
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  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
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31
 
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  var _default = /*#__PURE__*/function (_IndexedFasta) {
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- (0, _inherits2["default"])(_default, _IndexedFasta);
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+ (0, _inherits2.default)(_default, _IndexedFasta);
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  var _super = _createSuper(_default);
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  function _default(config, getSubAdapter, pluginManager) {
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  var _this;
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- (0, _classCallCheck2["default"])(this, _default);
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+ (0, _classCallCheck2.default)(this, _default);
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  _this = _super.call(this, config, getSubAdapter, pluginManager);
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  var fastaLocation = (0, _configuration.readConfObject)(config, 'fastaLocation');
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  var faiLocation = (0, _configuration.readConfObject)(config, 'faiLocation');
@@ -64,7 +64,7 @@ var _default = /*#__PURE__*/function (_IndexedFasta) {
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  return _this;
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  }
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- return (0, _createClass2["default"])(_default);
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- }(_IndexedFastaAdapter["default"]);
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+ return (0, _createClass2.default)(_default);
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+ }(_IndexedFastaAdapter.default);
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69
 
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- exports["default"] = _default;
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+ exports.default = _default;
@@ -12,13 +12,13 @@ var _BgzipFastaAdapter = _interopRequireDefault(require("./BgzipFastaAdapter"));
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12
 
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  var _configSchema = _interopRequireDefault(require("./configSchema"));
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- test('can use a indexed fasta with gzi', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ test('can use a indexed fasta with gzi', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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  var adapter, features, featuresArray, features2, featuresArray2;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
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- adapter = new _BgzipFastaAdapter["default"](_configSchema["default"].create({
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+ adapter = new _BgzipFastaAdapter.default(_configSchema.default.create({
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  fastaLocation: {
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  localPath: require.resolve('../../test_data/volvox.fa.gz'),
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  locationType: 'LocalPathLocation'
@@ -3,7 +3,7 @@
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _configuration = require("@jbrowse/core/configuration");
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@@ -33,4 +33,4 @@ var _default = (0, _configuration.ConfigurationSchema)('BgzipFastaAdapter', {
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  explicitlyTyped: true
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  });
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- exports["default"] = _default;
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+ exports.default = _default;
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
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  Object.defineProperty(exports, "configSchema", {
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  enumerable: true,
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  get: function get() {
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- return _configSchema["default"];
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+ return _configSchema.default;
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  }
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  });
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@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
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@@ -33,12 +33,12 @@ var _io = require("@jbrowse/core/util/io");
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  var _configuration = require("@jbrowse/core/configuration");
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35
 
36
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
36
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
37
37
 
38
38
  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
39
39
 
40
40
  var _default = /*#__PURE__*/function (_BaseAdapter) {
41
- (0, _inherits2["default"])(_default, _BaseAdapter);
41
+ (0, _inherits2.default)(_default, _BaseAdapter);
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42
 
43
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  var _super = _createSuper(_default);
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@@ -46,10 +46,10 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
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  function _default(config, getSubAdapter, pluginManager) {
47
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  var _this;
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49
- (0, _classCallCheck2["default"])(this, _default);
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+ (0, _classCallCheck2.default)(this, _default);
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  _this = _super.call(this, config, getSubAdapter, pluginManager);
51
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "refSeqs", void 0);
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- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "source", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "refSeqs", void 0);
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+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "source", void 0);
53
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  var chromSizesLocation = (0, _configuration.readConfObject)(config, 'chromSizesLocation');
54
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55
55
  if (!chromSizesLocation) {
@@ -62,12 +62,12 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
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  return _this;
63
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  }
64
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65
- (0, _createClass2["default"])(_default, [{
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+ (0, _createClass2.default)(_default, [{
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  key: "init",
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  value: function () {
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- var _init = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(file) {
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+ var _init = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(file) {
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  var data, refSeqs;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
@@ -89,7 +89,7 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
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  data.split('\n').forEach(function (line) {
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  if (line.length) {
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  var _line$split = line.split('\t'),
92
- _line$split2 = (0, _slicedToArray2["default"])(_line$split, 2),
92
+ _line$split2 = (0, _slicedToArray2.default)(_line$split, 2),
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  name = _line$split2[0],
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  length = _line$split2[1];
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@@ -115,9 +115,9 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
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  }, {
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  key: "getRegions",
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  value: function () {
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- var _getRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
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+ var _getRegions = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
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  var refSeqs;
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- return _regenerator["default"].wrap(function _callee2$(_context2) {
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+ return _regenerator.default.wrap(function _callee2$(_context2) {
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  while (1) {
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  switch (_context2.prev = _context2.next) {
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  case 0:
@@ -167,4 +167,4 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
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  return _default;
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  }(_BaseAdapter2.BaseAdapter);
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- exports["default"] = _default;
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+ exports.default = _default;
@@ -10,13 +10,13 @@ var _ChromSizesAdapter = _interopRequireDefault(require("./ChromSizesAdapter"));
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  var _configSchema = _interopRequireDefault(require("./configSchema"));
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- test('adapter can fetch sequence from volvox.chrom.sizes', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
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+ test('adapter can fetch sequence from volvox.chrom.sizes', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
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  var adapter, regions;
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- return _regenerator["default"].wrap(function _callee$(_context) {
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+ return _regenerator.default.wrap(function _callee$(_context) {
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  while (1) {
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  switch (_context.prev = _context.next) {
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  case 0:
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- adapter = new _ChromSizesAdapter["default"](_configSchema["default"].create({
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+ adapter = new _ChromSizesAdapter.default(_configSchema.default.create({
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  chromSizesLocation: {
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  localPath: require.resolve('./test_data/volvox.chrom.sizes'),
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  locationType: 'LocalPathLocation'
@@ -3,7 +3,7 @@
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _configuration = require("@jbrowse/core/configuration");
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@@ -19,4 +19,4 @@ var _default = (0, _configuration.ConfigurationSchema)('ChromSizesAdapter', {
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  explicitlyTyped: true
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  });
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22
- exports["default"] = _default;
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+ exports.default = _default;
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
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  Object.defineProperty(exports, "configSchema", {
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  enumerable: true,
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  get: function get() {
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- return _configSchema["default"];
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+ return _configSchema.default;
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  }
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  });
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@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
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  Object.defineProperty(exports, "__esModule", {
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  value: true
7
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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  var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
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@@ -61,13 +61,13 @@ function Translation(props) {
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  var render = 1 / bpPerPx >= 12;
62
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  var width = (region.end - region.start) / bpPerPx;
63
63
  var map = ['#d8d8d8', '#adadad', '#8f8f8f'].reverse();
64
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, translated.map(function (element, index) {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, translated.map(function (element, index) {
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  var x = region.reversed ? width - (w * (index + 1) + effectiveFrame / scale - drop) : w * index + effectiveFrame / scale - drop;
66
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  var letter = element.letter,
67
67
  codon = element.codon;
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, {
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+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, {
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  key: "".concat(index, "-").concat(letter)
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- }, /*#__PURE__*/_react["default"].createElement("rect", {
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+ }, /*#__PURE__*/_react.default.createElement("rect", {
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  x: x,
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  y: y,
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  width: render ? w : w + 0.7
@@ -76,7 +76,7 @@ function Translation(props) {
76
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  height: height,
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  stroke: render ? '#555' : 'none',
78
78
  fill: _util.defaultStarts.includes(codon) ? theme.palette.startCodon : _util.defaultStops.includes(codon) ? theme.palette.stopCodon : map[Math.abs(frame)]
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- }), render ? /*#__PURE__*/_react["default"].createElement("text", {
79
+ }), render ? /*#__PURE__*/_react.default.createElement("text", {
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  x: x + w / 2,
81
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  y: y + height / 2,
82
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  dominantBaseline: "middle",
@@ -96,26 +96,26 @@ function DNA(props) {
96
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  var render = 1 / bpPerPx >= 12;
97
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98
98
  var _bpSpanPx = (0, _util.bpSpanPx)(feature.get('start'), feature.get('end'), region, bpPerPx),
99
- _bpSpanPx2 = (0, _slicedToArray2["default"])(_bpSpanPx, 2),
99
+ _bpSpanPx2 = (0, _slicedToArray2.default)(_bpSpanPx, 2),
100
100
  leftPx = _bpSpanPx2[0],
101
101
  rightPx = _bpSpanPx2[1];
102
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103
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  var reverse = region.reversed;
104
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  var len = feature.get('end') - feature.get('start');
105
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  var w = Math.max((rightPx - leftPx) / len, 0.8);
106
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, seq.split('').map(function (letter, index) {
106
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, seq.split('').map(function (letter, index) {
107
107
  var color = theme.palette.bases[letter.toUpperCase()];
108
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  var x = reverse ? rightPx - (index + 1) * w : leftPx + index * w;
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- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, {
109
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, {
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  key: index
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- }, /*#__PURE__*/_react["default"].createElement("rect", {
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+ }, /*#__PURE__*/_react.default.createElement("rect", {
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  x: x,
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  y: y,
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  width: w,
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  height: height,
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  fill: color ? color.main : '#aaa',
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  stroke: render ? '#555' : 'none'
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- }), render ? /*#__PURE__*/_react["default"].createElement("text", {
118
+ }), render ? /*#__PURE__*/_react.default.createElement("text", {
119
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  x: x + w / 2,
120
120
  y: y + height / 2,
121
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  dominantBaseline: "middle",
@@ -135,14 +135,14 @@ var SequenceSVG = function SequenceSVG(_ref) {
135
135
  showTranslation = _ref.showTranslation,
136
136
  bpPerPx = _ref.bpPerPx;
137
137
 
138
- var _regions = (0, _slicedToArray2["default"])(regions, 1),
138
+ var _regions = (0, _slicedToArray2.default)(regions, 1),
139
139
  region = _regions[0];
140
140
 
141
141
  var theme = (0, _ui.createJBrowseTheme)(configTheme);
142
142
  var codonTable = (0, _util.generateCodonTable)(_util.defaultCodonTable);
143
143
  var height = 20;
144
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145
- var _ref2 = (0, _toConsumableArray2["default"])(features.values()),
145
+ var _ref2 = (0, _toConsumableArray2.default)(features.values()),
146
146
  feature = _ref2[0];
147
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148
148
  if (!feature) {
@@ -158,8 +158,8 @@ var SequenceSVG = function SequenceSVG(_ref) {
158
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159
159
 
160
160
  var currY = -20;
161
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, showTranslation && (region.reversed ? showReverse : showForward) ? [2, 1, 0].map(function (index) {
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- return /*#__PURE__*/_react["default"].createElement(Translation, {
161
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, showTranslation && (region.reversed ? showReverse : showForward) ? [2, 1, 0].map(function (index) {
162
+ return /*#__PURE__*/_react.default.createElement(Translation, {
163
163
  key: "translation-".concat(index),
164
164
  seq: seq,
165
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  y: currY += 20,
@@ -171,7 +171,7 @@ var SequenceSVG = function SequenceSVG(_ref) {
171
171
  height: height,
172
172
  reverse: region.reversed
173
173
  });
174
- }) : null, showForward ? /*#__PURE__*/_react["default"].createElement(DNA, {
174
+ }) : null, showForward ? /*#__PURE__*/_react.default.createElement(DNA, {
175
175
  height: height,
176
176
  y: currY += 20,
177
177
  feature: feature,
@@ -179,7 +179,7 @@ var SequenceSVG = function SequenceSVG(_ref) {
179
179
  seq: region.reversed ? (0, _util.complement)(seq) : seq,
180
180
  bpPerPx: bpPerPx,
181
181
  theme: theme
182
- }) : null, showReverse ? /*#__PURE__*/_react["default"].createElement(DNA, {
182
+ }) : null, showReverse ? /*#__PURE__*/_react.default.createElement(DNA, {
183
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  height: height,
184
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  y: currY += 20,
185
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  feature: feature,
@@ -188,7 +188,7 @@ var SequenceSVG = function SequenceSVG(_ref) {
188
188
  bpPerPx: bpPerPx,
189
189
  theme: theme
190
190
  }) : null, showTranslation && (region.reversed ? showForward : showReverse) ? [0, -1, -2].map(function (index) {
191
- return /*#__PURE__*/_react["default"].createElement(Translation, {
191
+ return /*#__PURE__*/_react.default.createElement(Translation, {
192
192
  key: "rev-translation-".concat(index),
193
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  seq: seq,
194
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  y: currY += 20,
@@ -208,7 +208,7 @@ var Wrapper = function Wrapper(_ref3) {
208
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  width = _ref3.width,
209
209
  totalHeight = _ref3.totalHeight,
210
210
  children = _ref3.children;
211
- return exportSVG ? /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, children) : /*#__PURE__*/_react["default"].createElement("svg", {
211
+ return exportSVG ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, children) : /*#__PURE__*/_react.default.createElement("svg", {
212
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  "data-testid": "sequence_track",
213
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  width: width,
214
214
  height: totalHeight,
@@ -223,17 +223,17 @@ function Sequence(props) {
223
223
  var regions = props.regions,
224
224
  bpPerPx = props.bpPerPx;
225
225
 
226
- var _regions2 = (0, _slicedToArray2["default"])(regions, 1),
226
+ var _regions2 = (0, _slicedToArray2.default)(regions, 1),
227
227
  region = _regions2[0];
228
228
 
229
229
  var width = (region.end - region.start) / bpPerPx;
230
230
  var totalHeight = 200;
231
- return /*#__PURE__*/_react["default"].createElement(Wrapper, (0, _extends2["default"])({}, props, {
231
+ return /*#__PURE__*/_react.default.createElement(Wrapper, (0, _extends2.default)({}, props, {
232
232
  totalHeight: totalHeight,
233
233
  width: width
234
- }), /*#__PURE__*/_react["default"].createElement(SequenceSVG, props));
234
+ }), /*#__PURE__*/_react.default.createElement(SequenceSVG, props));
235
235
  }
236
236
 
237
237
  var _default = (0, _mobxReact.observer)(Sequence);
238
238
 
239
- exports["default"] = _default;
239
+ exports.default = _default;
@@ -30,25 +30,25 @@ var _DivSequenceRendering = _interopRequireDefault(require("./DivSequenceRenderi
30
30
 
31
31
  var _configSchema = _interopRequireDefault(require("../configSchema"));
32
32
 
33
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
33
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
34
34
 
35
35
  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
36
36
 
37
37
  function Rendering(props) {
38
- return /*#__PURE__*/_react["default"].createElement(_core.ThemeProvider, {
38
+ return /*#__PURE__*/_react.default.createElement(_core.ThemeProvider, {
39
39
  theme: (0, _ui.createJBrowseTheme)()
40
- }, /*#__PURE__*/_react["default"].createElement(_DivSequenceRendering["default"], props));
40
+ }, /*#__PURE__*/_react.default.createElement(_DivSequenceRendering.default, props));
41
41
  }
42
42
 
43
43
  var ErrorCatcher = /*#__PURE__*/function (_React$Component) {
44
- (0, _inherits2["default"])(ErrorCatcher, _React$Component);
44
+ (0, _inherits2.default)(ErrorCatcher, _React$Component);
45
45
 
46
46
  var _super = _createSuper(ErrorCatcher);
47
47
 
48
48
  function ErrorCatcher(props) {
49
49
  var _this;
50
50
 
51
- (0, _classCallCheck2["default"])(this, ErrorCatcher);
51
+ (0, _classCallCheck2.default)(this, ErrorCatcher);
52
52
  _this = _super.call(this, props);
53
53
  _this.state = {
54
54
  hasError: false,
@@ -57,7 +57,7 @@ var ErrorCatcher = /*#__PURE__*/function (_React$Component) {
57
57
  return _this;
58
58
  }
59
59
 
60
- (0, _createClass2["default"])(ErrorCatcher, [{
60
+ (0, _createClass2.default)(ErrorCatcher, [{
61
61
  key: "render",
62
62
  value: function render() {
63
63
  var _this$state = this.state,
@@ -66,7 +66,7 @@ var ErrorCatcher = /*#__PURE__*/function (_React$Component) {
66
66
 
67
67
  if (hasError) {
68
68
  // You can render any custom fallback UI
69
- return /*#__PURE__*/_react["default"].createElement("h1", {
69
+ return /*#__PURE__*/_react.default.createElement("h1", {
70
70
  className: "error"
71
71
  }, errorText);
72
72
  }
@@ -85,10 +85,10 @@ var ErrorCatcher = /*#__PURE__*/function (_React$Component) {
85
85
  }
86
86
  }]);
87
87
  return ErrorCatcher;
88
- }(_react["default"].Component);
88
+ }(_react.default.Component);
89
89
 
90
90
  ErrorCatcher.propTypes = {
91
- children: _propTypes["default"].node.isRequired
91
+ children: _propTypes.default.node.isRequired
92
92
  };
93
93
  describe('<DivSequenceRendering />', function () {
94
94
  // This just keeps our testing logs clean by not displaying `console.error`s
@@ -113,7 +113,7 @@ describe('<DivSequenceRendering />', function () {
113
113
  console.error = originalError;
114
114
  });
115
115
  it('renders with no features', function () {
116
- var _render = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(Rendering, {
116
+ var _render = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(Rendering, {
117
117
  width: 500,
118
118
  height: 500,
119
119
  regions: [{
@@ -121,11 +121,11 @@ describe('<DivSequenceRendering />', function () {
121
121
  start: 0,
122
122
  end: 300
123
123
  }],
124
- layout: new _PrecomputedLayout["default"]({
124
+ layout: new _PrecomputedLayout.default({
125
125
  rectangles: {},
126
126
  totalHeight: 20
127
127
  }),
128
- config: _configSchema["default"].create(),
128
+ config: _configSchema.default.create(),
129
129
  bpPerPx: 3
130
130
  })),
131
131
  container = _render.container;
@@ -133,7 +133,7 @@ describe('<DivSequenceRendering />', function () {
133
133
  expect(container).toMatchSnapshot();
134
134
  });
135
135
  it('renders with one, zoomed way out', function () {
136
- var _render2 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(Rendering, {
136
+ var _render2 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(Rendering, {
137
137
  width: 500,
138
138
  height: 500,
139
139
  regions: [{
@@ -141,13 +141,13 @@ describe('<DivSequenceRendering />', function () {
141
141
  start: 0,
142
142
  end: 1000
143
143
  }],
144
- features: new Map([['one', new _simpleFeature["default"]({
144
+ features: new Map([['one', new _simpleFeature.default({
145
145
  uniqueId: 'one',
146
146
  start: 1,
147
147
  end: 3,
148
148
  seq: 'AB'
149
149
  })]]),
150
- config: _configSchema["default"].create({}),
150
+ config: _configSchema.default.create({}),
151
151
  bpPerPx: 3
152
152
  })),
153
153
  container = _render2.container;
@@ -155,7 +155,7 @@ describe('<DivSequenceRendering />', function () {
155
155
  expect(container).toMatchSnapshot();
156
156
  });
157
157
  it('renders with one feature with no seq, zoomed in, should throw', function () {
158
- var _render3 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(ErrorCatcher, null, /*#__PURE__*/_react["default"].createElement(Rendering, {
158
+ var _render3 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(ErrorCatcher, null, /*#__PURE__*/_react.default.createElement(Rendering, {
159
159
  width: 500,
160
160
  height: 500,
161
161
  regions: [{
@@ -163,12 +163,12 @@ describe('<DivSequenceRendering />', function () {
163
163
  start: 0,
164
164
  end: 1000
165
165
  }],
166
- features: new Map([['one', new _simpleFeature["default"]({
166
+ features: new Map([['one', new _simpleFeature.default({
167
167
  uniqueId: 'one',
168
168
  start: 1,
169
169
  end: 3
170
170
  })]]),
171
- config: _configSchema["default"].create({}),
171
+ config: _configSchema.default.create({}),
172
172
  bpPerPx: 0.05
173
173
  }))),
174
174
  container = _render3.container;
@@ -176,7 +176,7 @@ describe('<DivSequenceRendering />', function () {
176
176
  expect(container).toMatchSnapshot();
177
177
  });
178
178
  it('renders with one feature with an incorrect seq, zoomed in, should throw', function () {
179
- var _render4 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(ErrorCatcher, null, /*#__PURE__*/_react["default"].createElement(Rendering, {
179
+ var _render4 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(ErrorCatcher, null, /*#__PURE__*/_react.default.createElement(Rendering, {
180
180
  width: 500,
181
181
  height: 500,
182
182
  regions: [{
@@ -184,13 +184,13 @@ describe('<DivSequenceRendering />', function () {
184
184
  start: 0,
185
185
  end: 1000
186
186
  }],
187
- features: new Map([['one', new _simpleFeature["default"]({
187
+ features: new Map([['one', new _simpleFeature.default({
188
188
  uniqueId: 'one',
189
189
  start: 1,
190
190
  end: 3,
191
191
  seq: 'ABC'
192
192
  })]]),
193
- config: _configSchema["default"].create({}),
193
+ config: _configSchema.default.create({}),
194
194
  bpPerPx: 0.05
195
195
  }))),
196
196
  container = _render4.container;
@@ -198,7 +198,7 @@ describe('<DivSequenceRendering />', function () {
198
198
  expect(container).toMatchSnapshot();
199
199
  });
200
200
  it('renders with one feature with a correct seq, zoomed in, should render nicely', function () {
201
- var _render5 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(Rendering, {
201
+ var _render5 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(Rendering, {
202
202
  width: 500,
203
203
  height: 500,
204
204
  regions: [{
@@ -206,13 +206,13 @@ describe('<DivSequenceRendering />', function () {
206
206
  start: 0,
207
207
  end: 1000
208
208
  }],
209
- features: new Map([['one', new _simpleFeature["default"]({
209
+ features: new Map([['one', new _simpleFeature.default({
210
210
  uniqueId: 'one',
211
211
  start: 1,
212
212
  end: 10,
213
213
  seq: 'ABCDEFGHI'
214
214
  })]]),
215
- config: _configSchema["default"].create({}),
215
+ config: _configSchema.default.create({}),
216
216
  bpPerPx: 0.05
217
217
  })),
218
218
  container = _render5.container;
@@ -220,7 +220,7 @@ describe('<DivSequenceRendering />', function () {
220
220
  expect(container).toMatchSnapshot();
221
221
  });
222
222
  it('renders with one feature reversed with a correct seq, zoomed in, should render nicely', function () {
223
- var _render6 = (0, _react2.render)( /*#__PURE__*/_react["default"].createElement(Rendering, {
223
+ var _render6 = (0, _react2.render)( /*#__PURE__*/_react.default.createElement(Rendering, {
224
224
  width: 500,
225
225
  height: 500,
226
226
  regions: [{
@@ -229,13 +229,13 @@ describe('<DivSequenceRendering />', function () {
229
229
  end: 1000,
230
230
  reversed: true
231
231
  }],
232
- features: new Map([['one', new _simpleFeature["default"]({
232
+ features: new Map([['one', new _simpleFeature.default({
233
233
  uniqueId: 'one',
234
234
  start: 1,
235
235
  end: 10,
236
236
  seq: 'ABCDEFGHI'
237
237
  })]]),
238
- config: _configSchema["default"].create({}),
238
+ config: _configSchema.default.create({}),
239
239
  bpPerPx: 0.05
240
240
  })),
241
241
  container = _render6.container;
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  var _configuration = require("@jbrowse/core/configuration");
9
9
 
@@ -17,4 +17,4 @@ var _default = (0, _configuration.ConfigurationSchema)('DivSequenceRenderer', {
17
17
  explicitlyTyped: true
18
18
  });
19
19
 
20
- exports["default"] = _default;
20
+ exports.default = _default;
@@ -8,13 +8,13 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "ReactComponent", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _DivSequenceRendering["default"];
11
+ return _DivSequenceRendering.default;
12
12
  }
13
13
  });
14
14
  Object.defineProperty(exports, "configSchema", {
15
15
  enumerable: true,
16
16
  get: function get() {
17
- return _configSchema["default"];
17
+ return _configSchema.default;
18
18
  }
19
19
  });
20
20