@jbrowse/plugin-sequence 1.7.0 → 1.7.4

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Files changed (59) hide show
  1. package/dist/BgzipFastaAdapter/BgzipFastaAdapter.d.ts +7 -7
  2. package/dist/BgzipFastaAdapter/BgzipFastaAdapter.js +7 -7
  3. package/dist/BgzipFastaAdapter/BgzipFastaAdapter.test.js +3 -3
  4. package/dist/BgzipFastaAdapter/configSchema.d.ts +2 -2
  5. package/dist/BgzipFastaAdapter/configSchema.js +2 -2
  6. package/dist/BgzipFastaAdapter/index.d.ts +1 -1
  7. package/dist/BgzipFastaAdapter/index.js +1 -1
  8. package/dist/ChromSizesAdapter/ChromSizesAdapter.d.ts +19 -19
  9. package/dist/ChromSizesAdapter/ChromSizesAdapter.js +13 -13
  10. package/dist/ChromSizesAdapter/ChromSizesAdapter.test.js +3 -3
  11. package/dist/ChromSizesAdapter/configSchema.d.ts +2 -2
  12. package/dist/ChromSizesAdapter/configSchema.js +2 -2
  13. package/dist/ChromSizesAdapter/index.d.ts +1 -1
  14. package/dist/ChromSizesAdapter/index.js +1 -1
  15. package/dist/DivSequenceRenderer/components/DivSequenceRendering.d.ts +21 -21
  16. package/dist/DivSequenceRenderer/components/DivSequenceRendering.js +22 -22
  17. package/dist/DivSequenceRenderer/components/DivSequenceRendering.test.js +27 -27
  18. package/dist/DivSequenceRenderer/configSchema.d.ts +2 -2
  19. package/dist/DivSequenceRenderer/configSchema.js +2 -2
  20. package/dist/DivSequenceRenderer/index.d.ts +2 -2
  21. package/dist/DivSequenceRenderer/index.js +2 -2
  22. package/dist/GCContentAdapter/GCContentAdapter.d.ts +23 -23
  23. package/dist/GCContentAdapter/GCContentAdapter.js +18 -18
  24. package/dist/GCContentAdapter/configSchema.d.ts +3 -3
  25. package/dist/GCContentAdapter/configSchema.js +2 -2
  26. package/dist/GCContentAdapter/index.d.ts +6 -6
  27. package/dist/GCContentAdapter/index.js +5 -5
  28. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.d.ts +25 -25
  29. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.js +17 -17
  30. package/dist/IndexedFastaAdapter/IndexedFastaAdapter.test.js +3 -3
  31. package/dist/IndexedFastaAdapter/configSchema.d.ts +2 -2
  32. package/dist/IndexedFastaAdapter/configSchema.js +2 -2
  33. package/dist/IndexedFastaAdapter/index.d.ts +1 -1
  34. package/dist/IndexedFastaAdapter/index.js +1 -1
  35. package/dist/LinearReferenceSequenceDisplay/configSchema.d.ts +1 -1
  36. package/dist/LinearReferenceSequenceDisplay/index.d.ts +2 -2
  37. package/dist/LinearReferenceSequenceDisplay/model.d.ts +208 -208
  38. package/dist/LinearReferenceSequenceDisplay/model.js +4 -4
  39. package/dist/TwoBitAdapter/TwoBitAdapter.d.ts +26 -26
  40. package/dist/TwoBitAdapter/TwoBitAdapter.js +18 -18
  41. package/dist/TwoBitAdapter/TwoBitAdapter.test.js +6 -6
  42. package/dist/TwoBitAdapter/configSchema.d.ts +2 -2
  43. package/dist/TwoBitAdapter/configSchema.js +2 -2
  44. package/dist/TwoBitAdapter/index.d.ts +1 -1
  45. package/dist/TwoBitAdapter/index.js +1 -1
  46. package/dist/index.d.ts +6 -6
  47. package/dist/index.js +26 -26
  48. package/dist/index.test.js +2 -2
  49. package/dist/referenceSeqTrackConfig.d.ts +2 -2
  50. package/dist/referenceSeqTrackConfig.js +1 -1
  51. package/package.json +5 -4
  52. package/dist/DivSequenceRenderer/components/DivSequenceRendering.test.d.ts +0 -1
  53. package/dist/index.test.d.ts +0 -1
  54. package/dist/plugin-sequence.cjs.development.js +0 -2567
  55. package/dist/plugin-sequence.cjs.development.js.map +0 -1
  56. package/dist/plugin-sequence.cjs.production.min.js +0 -2
  57. package/dist/plugin-sequence.cjs.production.min.js.map +0 -1
  58. package/dist/plugin-sequence.esm.js +0 -2561
  59. package/dist/plugin-sequence.esm.js.map +0 -1
@@ -1,7 +1,7 @@
1
- import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
2
- import IndexedFasta from '../IndexedFastaAdapter/IndexedFastaAdapter';
3
- import PluginManager from '@jbrowse/core/PluginManager';
4
- import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
5
- export default class extends IndexedFasta {
6
- constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
7
- }
1
+ import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
2
+ import IndexedFasta from '../IndexedFastaAdapter/IndexedFastaAdapter';
3
+ import PluginManager from '@jbrowse/core/PluginManager';
4
+ import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
5
+ export default class extends IndexedFasta {
6
+ constructor(config: AnyConfigurationModel, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
7
+ }
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
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  Object.defineProperty(exports, "__esModule", {
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  value: true
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  });
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- exports["default"] = void 0;
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+ exports.default = void 0;
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10
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  var _createClass2 = _interopRequireDefault(require("@babel/runtime/helpers/createClass"));
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11
 
@@ -25,19 +25,19 @@ var _configuration = require("@jbrowse/core/configuration");
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25
 
26
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  var _IndexedFastaAdapter = _interopRequireDefault(require("../IndexedFastaAdapter/IndexedFastaAdapter"));
27
27
 
28
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
28
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
29
29
 
30
30
  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
31
31
 
32
32
  var _default = /*#__PURE__*/function (_IndexedFasta) {
33
- (0, _inherits2["default"])(_default, _IndexedFasta);
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+ (0, _inherits2.default)(_default, _IndexedFasta);
34
34
 
35
35
  var _super = _createSuper(_default);
36
36
 
37
37
  function _default(config, getSubAdapter, pluginManager) {
38
38
  var _this;
39
39
 
40
- (0, _classCallCheck2["default"])(this, _default);
40
+ (0, _classCallCheck2.default)(this, _default);
41
41
  _this = _super.call(this, config, getSubAdapter, pluginManager);
42
42
  var fastaLocation = (0, _configuration.readConfObject)(config, 'fastaLocation');
43
43
  var faiLocation = (0, _configuration.readConfObject)(config, 'faiLocation');
@@ -64,7 +64,7 @@ var _default = /*#__PURE__*/function (_IndexedFasta) {
64
64
  return _this;
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  }
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66
 
67
- return (0, _createClass2["default"])(_default);
68
- }(_IndexedFastaAdapter["default"]);
67
+ return (0, _createClass2.default)(_default);
68
+ }(_IndexedFastaAdapter.default);
69
69
 
70
- exports["default"] = _default;
70
+ exports.default = _default;
@@ -12,13 +12,13 @@ var _BgzipFastaAdapter = _interopRequireDefault(require("./BgzipFastaAdapter"));
12
12
 
13
13
  var _configSchema = _interopRequireDefault(require("./configSchema"));
14
14
 
15
- test('can use a indexed fasta with gzi', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
15
+ test('can use a indexed fasta with gzi', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
16
16
  var adapter, features, featuresArray, features2, featuresArray2;
17
- return _regenerator["default"].wrap(function _callee$(_context) {
17
+ return _regenerator.default.wrap(function _callee$(_context) {
18
18
  while (1) {
19
19
  switch (_context.prev = _context.next) {
20
20
  case 0:
21
- adapter = new _BgzipFastaAdapter["default"](_configSchema["default"].create({
21
+ adapter = new _BgzipFastaAdapter.default(_configSchema.default.create({
22
22
  fastaLocation: {
23
23
  localPath: require.resolve('../../test_data/volvox.fa.gz'),
24
24
  locationType: 'LocalPathLocation'
@@ -1,2 +1,2 @@
1
- declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
- export default _default;
1
+ declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default _default;
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  var _configuration = require("@jbrowse/core/configuration");
9
9
 
@@ -33,4 +33,4 @@ var _default = (0, _configuration.ConfigurationSchema)('BgzipFastaAdapter', {
33
33
  explicitlyTyped: true
34
34
  });
35
35
 
36
- exports["default"] = _default;
36
+ exports.default = _default;
@@ -1 +1 @@
1
- export { default as configSchema } from './configSchema';
1
+ export { default as configSchema } from './configSchema';
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "configSchema", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _configSchema["default"];
11
+ return _configSchema.default;
12
12
  }
13
13
  });
14
14
 
@@ -1,19 +1,19 @@
1
- import { RegionsAdapter, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
2
- import { Instance } from 'mobx-state-tree';
3
- import MyConfigSchema from './configSchema';
4
- import PluginManager from '@jbrowse/core/PluginManager';
5
- import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
6
- export default class extends BaseAdapter implements RegionsAdapter {
7
- protected refSeqs: Promise<Record<string, number>>;
8
- protected source: string;
9
- constructor(config: Instance<typeof MyConfigSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
10
- private init;
11
- getRegions(): Promise<{
12
- refName: string;
13
- start: number;
14
- end: number;
15
- }[]>;
16
- getFeatures(): void;
17
- getHeader(): {};
18
- freeResources(): void;
19
- }
1
+ import { RegionsAdapter, BaseAdapter } from '@jbrowse/core/data_adapters/BaseAdapter';
2
+ import { Instance } from 'mobx-state-tree';
3
+ import MyConfigSchema from './configSchema';
4
+ import PluginManager from '@jbrowse/core/PluginManager';
5
+ import { getSubAdapterType } from '@jbrowse/core/data_adapters/dataAdapterCache';
6
+ export default class extends BaseAdapter implements RegionsAdapter {
7
+ protected refSeqs: Promise<Record<string, number>>;
8
+ protected source: string;
9
+ constructor(config: Instance<typeof MyConfigSchema>, getSubAdapter?: getSubAdapterType, pluginManager?: PluginManager);
10
+ private init;
11
+ getRegions(): Promise<{
12
+ refName: string;
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+ start: number;
14
+ end: number;
15
+ }[]>;
16
+ getFeatures(): void;
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+ getHeader(): {};
18
+ freeResources(): void;
19
+ }
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
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+ exports.default = void 0;
9
9
 
10
10
  var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
11
 
@@ -33,12 +33,12 @@ var _io = require("@jbrowse/core/util/io");
33
33
 
34
34
  var _configuration = require("@jbrowse/core/configuration");
35
35
 
36
- function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2["default"])(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2["default"])(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2["default"])(this, result); }; }
36
+ function _createSuper(Derived) { var hasNativeReflectConstruct = _isNativeReflectConstruct(); return function _createSuperInternal() { var Super = (0, _getPrototypeOf2.default)(Derived), result; if (hasNativeReflectConstruct) { var NewTarget = (0, _getPrototypeOf2.default)(this).constructor; result = Reflect.construct(Super, arguments, NewTarget); } else { result = Super.apply(this, arguments); } return (0, _possibleConstructorReturn2.default)(this, result); }; }
37
37
 
38
38
  function _isNativeReflectConstruct() { if (typeof Reflect === "undefined" || !Reflect.construct) return false; if (Reflect.construct.sham) return false; if (typeof Proxy === "function") return true; try { Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); return true; } catch (e) { return false; } }
39
39
 
40
40
  var _default = /*#__PURE__*/function (_BaseAdapter) {
41
- (0, _inherits2["default"])(_default, _BaseAdapter);
41
+ (0, _inherits2.default)(_default, _BaseAdapter);
42
42
 
43
43
  var _super = _createSuper(_default);
44
44
 
@@ -46,10 +46,10 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
46
46
  function _default(config, getSubAdapter, pluginManager) {
47
47
  var _this;
48
48
 
49
- (0, _classCallCheck2["default"])(this, _default);
49
+ (0, _classCallCheck2.default)(this, _default);
50
50
  _this = _super.call(this, config, getSubAdapter, pluginManager);
51
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "refSeqs", void 0);
52
- (0, _defineProperty2["default"])((0, _assertThisInitialized2["default"])(_this), "source", void 0);
51
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "refSeqs", void 0);
52
+ (0, _defineProperty2.default)((0, _assertThisInitialized2.default)(_this), "source", void 0);
53
53
  var chromSizesLocation = (0, _configuration.readConfObject)(config, 'chromSizesLocation');
54
54
 
55
55
  if (!chromSizesLocation) {
@@ -62,12 +62,12 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
62
62
  return _this;
63
63
  }
64
64
 
65
- (0, _createClass2["default"])(_default, [{
65
+ (0, _createClass2.default)(_default, [{
66
66
  key: "init",
67
67
  value: function () {
68
- var _init = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee(file) {
68
+ var _init = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(file) {
69
69
  var data, refSeqs;
70
- return _regenerator["default"].wrap(function _callee$(_context) {
70
+ return _regenerator.default.wrap(function _callee$(_context) {
71
71
  while (1) {
72
72
  switch (_context.prev = _context.next) {
73
73
  case 0:
@@ -89,7 +89,7 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
89
89
  data.split('\n').forEach(function (line) {
90
90
  if (line.length) {
91
91
  var _line$split = line.split('\t'),
92
- _line$split2 = (0, _slicedToArray2["default"])(_line$split, 2),
92
+ _line$split2 = (0, _slicedToArray2.default)(_line$split, 2),
93
93
  name = _line$split2[0],
94
94
  length = _line$split2[1];
95
95
 
@@ -115,9 +115,9 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
115
115
  }, {
116
116
  key: "getRegions",
117
117
  value: function () {
118
- var _getRegions = (0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee2() {
118
+ var _getRegions = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee2() {
119
119
  var refSeqs;
120
- return _regenerator["default"].wrap(function _callee2$(_context2) {
120
+ return _regenerator.default.wrap(function _callee2$(_context2) {
121
121
  while (1) {
122
122
  switch (_context2.prev = _context2.next) {
123
123
  case 0:
@@ -167,4 +167,4 @@ var _default = /*#__PURE__*/function (_BaseAdapter) {
167
167
  return _default;
168
168
  }(_BaseAdapter2.BaseAdapter);
169
169
 
170
- exports["default"] = _default;
170
+ exports.default = _default;
@@ -10,13 +10,13 @@ var _ChromSizesAdapter = _interopRequireDefault(require("./ChromSizesAdapter"));
10
10
 
11
11
  var _configSchema = _interopRequireDefault(require("./configSchema"));
12
12
 
13
- test('adapter can fetch sequence from volvox.chrom.sizes', /*#__PURE__*/(0, _asyncToGenerator2["default"])( /*#__PURE__*/_regenerator["default"].mark(function _callee() {
13
+ test('adapter can fetch sequence from volvox.chrom.sizes', /*#__PURE__*/(0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee() {
14
14
  var adapter, regions;
15
- return _regenerator["default"].wrap(function _callee$(_context) {
15
+ return _regenerator.default.wrap(function _callee$(_context) {
16
16
  while (1) {
17
17
  switch (_context.prev = _context.next) {
18
18
  case 0:
19
- adapter = new _ChromSizesAdapter["default"](_configSchema["default"].create({
19
+ adapter = new _ChromSizesAdapter.default(_configSchema.default.create({
20
20
  chromSizesLocation: {
21
21
  localPath: require.resolve('./test_data/volvox.chrom.sizes'),
22
22
  locationType: 'LocalPathLocation'
@@ -1,2 +1,2 @@
1
- declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
- export default _default;
1
+ declare const _default: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
2
+ export default _default;
@@ -3,7 +3,7 @@
3
3
  Object.defineProperty(exports, "__esModule", {
4
4
  value: true
5
5
  });
6
- exports["default"] = void 0;
6
+ exports.default = void 0;
7
7
 
8
8
  var _configuration = require("@jbrowse/core/configuration");
9
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@@ -19,4 +19,4 @@ var _default = (0, _configuration.ConfigurationSchema)('ChromSizesAdapter', {
19
19
  explicitlyTyped: true
20
20
  });
21
21
 
22
- exports["default"] = _default;
22
+ exports.default = _default;
@@ -1 +1 @@
1
- export { default as configSchema } from './configSchema';
1
+ export { default as configSchema } from './configSchema';
@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", {
8
8
  Object.defineProperty(exports, "configSchema", {
9
9
  enumerable: true,
10
10
  get: function get() {
11
- return _configSchema["default"];
11
+ return _configSchema.default;
12
12
  }
13
13
  });
14
14
 
@@ -1,21 +1,21 @@
1
- /// <reference types="react" />
2
- import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
3
- import { Feature } from '@jbrowse/core/util/simpleFeature';
4
- import { Region } from '@jbrowse/core/util/types';
5
- interface MyProps {
6
- exportSVG?: {
7
- rasterizeLayers: boolean;
8
- };
9
- features: Map<string, Feature>;
10
- regions: Region[];
11
- bpPerPx: number;
12
- config: AnyConfigurationModel;
13
- highResolutionScaling: number;
14
- theme: any;
15
- showForward: boolean;
16
- showReverse: boolean;
17
- showTranslation: boolean;
18
- }
19
- declare function Sequence(props: MyProps): JSX.Element;
20
- declare const _default: typeof Sequence;
21
- export default _default;
1
+ /// <reference types="react" />
2
+ import { AnyConfigurationModel } from '@jbrowse/core/configuration/configurationSchema';
3
+ import { Feature } from '@jbrowse/core/util/simpleFeature';
4
+ import { Region } from '@jbrowse/core/util/types';
5
+ interface MyProps {
6
+ exportSVG?: {
7
+ rasterizeLayers: boolean;
8
+ };
9
+ features: Map<string, Feature>;
10
+ regions: Region[];
11
+ bpPerPx: number;
12
+ config: AnyConfigurationModel;
13
+ highResolutionScaling: number;
14
+ theme: any;
15
+ showForward: boolean;
16
+ showReverse: boolean;
17
+ showTranslation: boolean;
18
+ }
19
+ declare function Sequence(props: MyProps): JSX.Element;
20
+ declare const _default: typeof Sequence;
21
+ export default _default;
@@ -5,7 +5,7 @@ var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefau
5
5
  Object.defineProperty(exports, "__esModule", {
6
6
  value: true
7
7
  });
8
- exports["default"] = void 0;
8
+ exports.default = void 0;
9
9
 
10
10
  var _extends2 = _interopRequireDefault(require("@babel/runtime/helpers/extends"));
11
11
 
@@ -61,13 +61,13 @@ function Translation(props) {
61
61
  var render = 1 / bpPerPx >= 12;
62
62
  var width = (region.end - region.start) / bpPerPx;
63
63
  var map = ['#d8d8d8', '#adadad', '#8f8f8f'].reverse();
64
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, translated.map(function (element, index) {
64
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, translated.map(function (element, index) {
65
65
  var x = region.reversed ? width - (w * (index + 1) + effectiveFrame / scale - drop) : w * index + effectiveFrame / scale - drop;
66
66
  var letter = element.letter,
67
67
  codon = element.codon;
68
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, {
68
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, {
69
69
  key: "".concat(index, "-").concat(letter)
70
- }, /*#__PURE__*/_react["default"].createElement("rect", {
70
+ }, /*#__PURE__*/_react.default.createElement("rect", {
71
71
  x: x,
72
72
  y: y,
73
73
  width: render ? w : w + 0.7
@@ -76,7 +76,7 @@ function Translation(props) {
76
76
  height: height,
77
77
  stroke: render ? '#555' : 'none',
78
78
  fill: _util.defaultStarts.includes(codon) ? theme.palette.startCodon : _util.defaultStops.includes(codon) ? theme.palette.stopCodon : map[Math.abs(frame)]
79
- }), render ? /*#__PURE__*/_react["default"].createElement("text", {
79
+ }), render ? /*#__PURE__*/_react.default.createElement("text", {
80
80
  x: x + w / 2,
81
81
  y: y + height / 2,
82
82
  dominantBaseline: "middle",
@@ -96,26 +96,26 @@ function DNA(props) {
96
96
  var render = 1 / bpPerPx >= 12;
97
97
 
98
98
  var _bpSpanPx = (0, _util.bpSpanPx)(feature.get('start'), feature.get('end'), region, bpPerPx),
99
- _bpSpanPx2 = (0, _slicedToArray2["default"])(_bpSpanPx, 2),
99
+ _bpSpanPx2 = (0, _slicedToArray2.default)(_bpSpanPx, 2),
100
100
  leftPx = _bpSpanPx2[0],
101
101
  rightPx = _bpSpanPx2[1];
102
102
 
103
103
  var reverse = region.reversed;
104
104
  var len = feature.get('end') - feature.get('start');
105
105
  var w = Math.max((rightPx - leftPx) / len, 0.8);
106
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, seq.split('').map(function (letter, index) {
106
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, seq.split('').map(function (letter, index) {
107
107
  var color = theme.palette.bases[letter.toUpperCase()];
108
108
  var x = reverse ? rightPx - (index + 1) * w : leftPx + index * w;
109
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, {
109
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, {
110
110
  key: index
111
- }, /*#__PURE__*/_react["default"].createElement("rect", {
111
+ }, /*#__PURE__*/_react.default.createElement("rect", {
112
112
  x: x,
113
113
  y: y,
114
114
  width: w,
115
115
  height: height,
116
116
  fill: color ? color.main : '#aaa',
117
117
  stroke: render ? '#555' : 'none'
118
- }), render ? /*#__PURE__*/_react["default"].createElement("text", {
118
+ }), render ? /*#__PURE__*/_react.default.createElement("text", {
119
119
  x: x + w / 2,
120
120
  y: y + height / 2,
121
121
  dominantBaseline: "middle",
@@ -135,14 +135,14 @@ var SequenceSVG = function SequenceSVG(_ref) {
135
135
  showTranslation = _ref.showTranslation,
136
136
  bpPerPx = _ref.bpPerPx;
137
137
 
138
- var _regions = (0, _slicedToArray2["default"])(regions, 1),
138
+ var _regions = (0, _slicedToArray2.default)(regions, 1),
139
139
  region = _regions[0];
140
140
 
141
141
  var theme = (0, _ui.createJBrowseTheme)(configTheme);
142
142
  var codonTable = (0, _util.generateCodonTable)(_util.defaultCodonTable);
143
143
  var height = 20;
144
144
 
145
- var _ref2 = (0, _toConsumableArray2["default"])(features.values()),
145
+ var _ref2 = (0, _toConsumableArray2.default)(features.values()),
146
146
  feature = _ref2[0];
147
147
 
148
148
  if (!feature) {
@@ -158,8 +158,8 @@ var SequenceSVG = function SequenceSVG(_ref) {
158
158
 
159
159
 
160
160
  var currY = -20;
161
- return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, showTranslation && (region.reversed ? showReverse : showForward) ? [2, 1, 0].map(function (index) {
162
- return /*#__PURE__*/_react["default"].createElement(Translation, {
161
+ return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, showTranslation && (region.reversed ? showReverse : showForward) ? [2, 1, 0].map(function (index) {
162
+ return /*#__PURE__*/_react.default.createElement(Translation, {
163
163
  key: "translation-".concat(index),
164
164
  seq: seq,
165
165
  y: currY += 20,
@@ -171,7 +171,7 @@ var SequenceSVG = function SequenceSVG(_ref) {
171
171
  height: height,
172
172
  reverse: region.reversed
173
173
  });
174
- }) : null, showForward ? /*#__PURE__*/_react["default"].createElement(DNA, {
174
+ }) : null, showForward ? /*#__PURE__*/_react.default.createElement(DNA, {
175
175
  height: height,
176
176
  y: currY += 20,
177
177
  feature: feature,
@@ -179,7 +179,7 @@ var SequenceSVG = function SequenceSVG(_ref) {
179
179
  seq: region.reversed ? (0, _util.complement)(seq) : seq,
180
180
  bpPerPx: bpPerPx,
181
181
  theme: theme
182
- }) : null, showReverse ? /*#__PURE__*/_react["default"].createElement(DNA, {
182
+ }) : null, showReverse ? /*#__PURE__*/_react.default.createElement(DNA, {
183
183
  height: height,
184
184
  y: currY += 20,
185
185
  feature: feature,
@@ -188,7 +188,7 @@ var SequenceSVG = function SequenceSVG(_ref) {
188
188
  bpPerPx: bpPerPx,
189
189
  theme: theme
190
190
  }) : null, showTranslation && (region.reversed ? showForward : showReverse) ? [0, -1, -2].map(function (index) {
191
- return /*#__PURE__*/_react["default"].createElement(Translation, {
191
+ return /*#__PURE__*/_react.default.createElement(Translation, {
192
192
  key: "rev-translation-".concat(index),
193
193
  seq: seq,
194
194
  y: currY += 20,
@@ -208,7 +208,7 @@ var Wrapper = function Wrapper(_ref3) {
208
208
  width = _ref3.width,
209
209
  totalHeight = _ref3.totalHeight,
210
210
  children = _ref3.children;
211
- return exportSVG ? /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, children) : /*#__PURE__*/_react["default"].createElement("svg", {
211
+ return exportSVG ? /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, children) : /*#__PURE__*/_react.default.createElement("svg", {
212
212
  "data-testid": "sequence_track",
213
213
  width: width,
214
214
  height: totalHeight,
@@ -223,17 +223,17 @@ function Sequence(props) {
223
223
  var regions = props.regions,
224
224
  bpPerPx = props.bpPerPx;
225
225
 
226
- var _regions2 = (0, _slicedToArray2["default"])(regions, 1),
226
+ var _regions2 = (0, _slicedToArray2.default)(regions, 1),
227
227
  region = _regions2[0];
228
228
 
229
229
  var width = (region.end - region.start) / bpPerPx;
230
230
  var totalHeight = 200;
231
- return /*#__PURE__*/_react["default"].createElement(Wrapper, (0, _extends2["default"])({}, props, {
231
+ return /*#__PURE__*/_react.default.createElement(Wrapper, (0, _extends2.default)({}, props, {
232
232
  totalHeight: totalHeight,
233
233
  width: width
234
- }), /*#__PURE__*/_react["default"].createElement(SequenceSVG, props));
234
+ }), /*#__PURE__*/_react.default.createElement(SequenceSVG, props));
235
235
  }
236
236
 
237
237
  var _default = (0, _mobxReact.observer)(Sequence);
238
238
 
239
- exports["default"] = _default;
239
+ exports.default = _default;