@jbrowse/plugin-rdf 2.6.1 → 2.6.3

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Files changed (29) hide show
  1. package/dist/SPARQLAdapter/SPARQLAdapter.js +0 -1
  2. package/dist/SPARQLAdapter/configSchema.js +0 -1
  3. package/dist/SPARQLAdapter/index.js +0 -1
  4. package/dist/index.js +0 -1
  5. package/esm/SPARQLAdapter/SPARQLAdapter.js +0 -1
  6. package/esm/SPARQLAdapter/configSchema.js +0 -1
  7. package/esm/SPARQLAdapter/index.js +0 -1
  8. package/esm/index.js +0 -1
  9. package/package.json +3 -4
  10. package/dist/SPARQLAdapter/SPARQLAdapter.js.map +0 -1
  11. package/dist/SPARQLAdapter/configSchema.js.map +0 -1
  12. package/dist/SPARQLAdapter/index.js.map +0 -1
  13. package/dist/index.js.map +0 -1
  14. package/esm/SPARQLAdapter/SPARQLAdapter.js.map +0 -1
  15. package/esm/SPARQLAdapter/configSchema.js.map +0 -1
  16. package/esm/SPARQLAdapter/index.js.map +0 -1
  17. package/esm/index.js.map +0 -1
  18. package/src/SPARQLAdapter/README.md +0 -115
  19. package/src/SPARQLAdapter/SPARQLAdapter.test.ts +0 -84
  20. package/src/SPARQLAdapter/SPARQLAdapter.ts +0 -257
  21. package/src/SPARQLAdapter/__snapshots__/SPARQLAdapter.test.ts.snap +0 -449
  22. package/src/SPARQLAdapter/configSchema.ts +0 -40
  23. package/src/SPARQLAdapter/index.ts +0 -2
  24. package/src/SPARQLAdapter/test_data/emptyQueryResponse.json +0 -30
  25. package/src/SPARQLAdapter/test_data/queryResponse.json +0 -3834
  26. package/src/SPARQLAdapter/test_data/refNamesResponse.json +0 -114
  27. package/src/__snapshots__/index.test.ts.snap +0 -3
  28. package/src/index.test.ts +0 -18
  29. package/src/index.ts +0 -46
package/src/SPARQLAdapter/test_data/refNamesResponse.json DELETED
@@ -1,114 +0,0 @@
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- {
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- "head": {
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- "link": [],
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- "vars": ["refName"]
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- },
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- "results": {
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- "distinct": false,
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- "ordered": true,
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- "bindings": [
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_004353.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_004354.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_024511.2"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_024512.1"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NT_033777.3"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NT_033778.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NT_033779.5"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NT_037436.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_001665.2"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_005100.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_005101.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_005102.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_005103.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_005104.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_005105.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_005106.4"
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- }
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- },
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- {
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- "refName": {
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- "type": "literal",
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- "value": "NC_039323.1"
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- }
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- }
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- ]
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- }
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- }
package/src/__snapshots__/index.test.ts.snap DELETED
@@ -1,3 +0,0 @@
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- // Jest Snapshot v1, https://goo.gl/fbAQLP
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-
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- exports[`plugin in a stock JBrowse 1`] = `{}`;
package/src/index.test.ts DELETED
@@ -1,18 +0,0 @@
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- import PluginManager from '@jbrowse/core/PluginManager'
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- import { getSnapshot } from 'mobx-state-tree'
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- import ThisPlugin from './index'
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-
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- test('plugin in a stock JBrowse', () => {
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- const pluginManager = new PluginManager([new ThisPlugin()])
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- pluginManager.createPluggableElements()
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- pluginManager.configure()
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- expect(() => pluginManager.addPlugin(new ThisPlugin())).toThrow(
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- /JBrowse already configured, cannot add plugins/,
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- )
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-
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- const SPARQLAdapter = pluginManager.getAdapterType('SPARQLAdapter')
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- const config = SPARQLAdapter.configSchema.create({
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- type: 'SPARQLAdapter',
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- })
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- expect(getSnapshot(config)).toMatchSnapshot()
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- })
package/src/index.ts DELETED
@@ -1,46 +0,0 @@
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- import AdapterType from '@jbrowse/core/pluggableElementTypes/AdapterType'
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- import Plugin from '@jbrowse/core/Plugin'
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- import PluginManager from '@jbrowse/core/PluginManager'
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- import { FileLocation } from '@jbrowse/core/util/types'
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- import {
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- AdapterClass as SPARQLAdapterClass,
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- configSchema as sparqlAdapterConfigSchema,
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- } from './SPARQLAdapter'
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- import { AdapterGuesser, getFileName } from '@jbrowse/core/util/tracks'
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-
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- export default class RdfPlugin extends Plugin {
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- name = 'RdfPlugin'
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-
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- install(pluginManager: PluginManager) {
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- pluginManager.addAdapterType(
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- () =>
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- new AdapterType({
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- name: 'SPARQLAdapter',
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- displayName: 'SPARQL adapter',
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- configSchema: sparqlAdapterConfigSchema,
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- AdapterClass: SPARQLAdapterClass,
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- }),
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- )
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- pluginManager.addToExtensionPoint(
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- 'Core-guessAdapterForLocation',
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- (adapterGuesser: AdapterGuesser) => {
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- return (
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- file: FileLocation,
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- index?: FileLocation,
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- adapterHint?: string,
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- ) => {
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- const regexGuess = /\/sparql$/i
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- const adapterName = 'SPARQLAdapter'
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- const fileName = getFileName(file)
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- if (regexGuess.test(fileName) || adapterHint === adapterName) {
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- return {
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- type: adapterName,
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- endpoint: file,
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- }
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- }
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- return adapterGuesser(file, index, adapterHint)
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- }
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- },
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- )
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- }
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- }