npm - @jbrowse/plugin-rdf - Versions diffs - 2.6.1 → 2.6.3 - Mend

@jbrowse/plugin-rdf 2.6.1 → 2.6.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (29) hide show

package/dist/SPARQLAdapter/SPARQLAdapter.js +0 -1
package/dist/SPARQLAdapter/configSchema.js +0 -1
package/dist/SPARQLAdapter/index.js +0 -1
package/dist/index.js +0 -1
package/esm/SPARQLAdapter/SPARQLAdapter.js +0 -1
package/esm/SPARQLAdapter/configSchema.js +0 -1
package/esm/SPARQLAdapter/index.js +0 -1
package/esm/index.js +0 -1
package/package.json +3 -4
package/dist/SPARQLAdapter/SPARQLAdapter.js.map +0 -1
package/dist/SPARQLAdapter/configSchema.js.map +0 -1
package/dist/SPARQLAdapter/index.js.map +0 -1
package/dist/index.js.map +0 -1
package/esm/SPARQLAdapter/SPARQLAdapter.js.map +0 -1
package/esm/SPARQLAdapter/configSchema.js.map +0 -1
package/esm/SPARQLAdapter/index.js.map +0 -1
package/esm/index.js.map +0 -1
package/src/SPARQLAdapter/README.md +0 -115
package/src/SPARQLAdapter/SPARQLAdapter.test.ts +0 -84
package/src/SPARQLAdapter/SPARQLAdapter.ts +0 -257
package/src/SPARQLAdapter/__snapshots__/SPARQLAdapter.test.ts.snap +0 -449
package/src/SPARQLAdapter/configSchema.ts +0 -40
package/src/SPARQLAdapter/index.ts +0 -2
package/src/SPARQLAdapter/test_data/emptyQueryResponse.json +0 -30
package/src/SPARQLAdapter/test_data/queryResponse.json +0 -3834
package/src/SPARQLAdapter/test_data/refNamesResponse.json +0 -114
package/src/__snapshots__/index.test.ts.snap +0 -3
package/src/index.test.ts +0 -18
package/src/index.ts +0 -46

package/src/SPARQLAdapter/test_data/queryResponse.json DELETED Viewed

@@ -1,3834 +0,0 @@
-{
-  "head": {
-    "link": [],
-    "vars": [
-      "uniqueId",
-      "type",
-      "start",
-      "end",
-      "sub_uniqueId",
-      "sub_type",
-      "sub_start",
-      "sub_end",
-      "sub_sub_uniqueId",
-      "sub_sub_type",
-      "sub_sub_start",
-      "sub_sub_end",
-      "faldo_type",
-      "strand",
-      "sub_strand",
-      "sub_sub_strand",
-      "name",
-      "description",
-      "sub_name",
-      "sub_description",
-      "sub_class"
-    ]
-  },
-  "results": {
-    "distinct": false,
-    "ordered": true,
-    "bindings": [
-      {
-        "uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318085-8344167:1:gene.266"
-        },
-        "type": {
-          "type": "literal",
-          "value": "gene"
-        },
-        "start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318085"
-        },
-        "end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344167"
-        },
-        "sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318109-8344013:1:CDS.703"
-        },
-        "sub_type": {
-          "type": "literal",
-          "value": "mRNA"
-        },
-        "sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318109"
-        },
-        "sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344013"
-        },
-        "sub_sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318109-8318186:1:exon-urn:uuid:5f183854-6d7d-4481-a380-2f7589d95350"
-        },
-        "sub_sub_type": {
-          "type": "literal",
-          "value": "CDS"
-        },
-        "sub_sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318109"
-        },
-        "sub_sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318186"
-        },
-        "faldo_type": {
-          "type": "uri",
-          "value": "http://biohackathon.org/resource/faldo#ForwardStrandPosition"
-        },
-        "strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "description": {
-          "type": "literal",
-          "value": "solute carrier family 45 member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon."
-        },
-        "sub_name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "sub_description": {
-          "type": "literal",
-          "value": "proton-associated sugar transporter A isoform X1"
-        },
-        "sub_class": {
-          "type": "uri",
-          "value": "http://purl.obolibrary.org/obo/SO_0000316"
-        }
-      },
-      {
-        "uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318085-8344167:1:gene.266"
-        },
-        "type": {
-          "type": "literal",
-          "value": "gene"
-        },
-        "start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318085"
-        },
-        "end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344167"
-        },
-        "sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318109-8344013:1:CDS.703"
-        },
-        "sub_type": {
-          "type": "literal",
-          "value": "mRNA"
-        },
-        "sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318109"
-        },
-        "sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344013"
-        },
-        "sub_sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8324306-8324726:1:exon-urn:uuid:7c2b06d1-c04d-495f-ae34-4a7d6514b0de"
-        },
-        "sub_sub_type": {
-          "type": "literal",
-          "value": "CDS"
-        },
-        "sub_sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8324306"
-        },
-        "sub_sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8324726"
-        },
-        "faldo_type": {
-          "type": "uri",
-          "value": "http://biohackathon.org/resource/faldo#ForwardStrandPosition"
-        },
-        "strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "description": {
-          "type": "literal",
-          "value": "solute carrier family 45 member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon."
-        },
-        "sub_name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "sub_description": {
-          "type": "literal",
-          "value": "proton-associated sugar transporter A isoform X1"
-        },
-        "sub_class": {
-          "type": "uri",
-          "value": "http://purl.obolibrary.org/obo/SO_0000316"
-        }
-      },
-      {
-        "uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318085-8344167:1:gene.266"
-        },
-        "type": {
-          "type": "literal",
-          "value": "gene"
-        },
-        "start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318085"
-        },
-        "end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344167"
-        },
-        "sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318109-8344013:1:CDS.703"
-        },
-        "sub_type": {
-          "type": "literal",
-          "value": "mRNA"
-        },
-        "sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318109"
-        },
-        "sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344013"
-        },
-        "sub_sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8325298-8325390:1:exon-urn:uuid:db09fb23-4a13-45e2-8efe-046836811046"
-        },
-        "sub_sub_type": {
-          "type": "literal",
-          "value": "CDS"
-        },
-        "sub_sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8325298"
-        },
-        "sub_sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8325390"
-        },
-        "faldo_type": {
-          "type": "uri",
-          "value": "http://biohackathon.org/resource/faldo#ForwardStrandPosition"
-        },
-        "strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "description": {
-          "type": "literal",
-          "value": "solute carrier family 45 member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon."
-        },
-        "sub_name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "sub_description": {
-          "type": "literal",
-          "value": "proton-associated sugar transporter A isoform X1"
-        },
-        "sub_class": {
-          "type": "uri",
-          "value": "http://purl.obolibrary.org/obo/SO_0000316"
-        }
-      },
-      {
-        "uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318085-8344167:1:gene.266"
-        },
-        "type": {
-          "type": "literal",
-          "value": "gene"
-        },
-        "start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318085"
-        },
-        "end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344167"
-        },
-        "sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318109-8344013:1:CDS.703"
-        },
-        "sub_type": {
-          "type": "literal",
-          "value": "mRNA"
-        },
-        "sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318109"
-        },
-        "sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344013"
-        },
-        "sub_sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8325818-8326042:1:exon-urn:uuid:fa0bfc05-f7b9-4780-99e3-fbdd9309d7ff"
-        },
-        "sub_sub_type": {
-          "type": "literal",
-          "value": "CDS"
-        },
-        "sub_sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8325818"
-        },
-        "sub_sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8326042"
-        },
-        "faldo_type": {
-          "type": "uri",
-          "value": "http://biohackathon.org/resource/faldo#ForwardStrandPosition"
-        },
-        "strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "description": {
-          "type": "literal",
-          "value": "solute carrier family 45 member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon."
-        },
-        "sub_name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "sub_description": {
-          "type": "literal",
-          "value": "proton-associated sugar transporter A isoform X1"
-        },
-        "sub_class": {
-          "type": "uri",
-          "value": "http://purl.obolibrary.org/obo/SO_0000316"
-        }
-      },
-      {
-        "uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318085-8344167:1:gene.266"
-        },
-        "type": {
-          "type": "literal",
-          "value": "gene"
-        },
-        "start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318085"
-        },
-        "end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344167"
-        },
-        "sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318109-8344013:1:CDS.703"
-        },
-        "sub_type": {
-          "type": "literal",
-          "value": "mRNA"
-        },
-        "sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318109"
-        },
-        "sub_end": {
-          "type": "typed-literal",
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-          "value": "8344013"
-        },
-        "sub_sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8330209-8330936:1:exon-urn:uuid:39c5e70a-3f63-4fb2-beb3-391e69ac568f"
-        },
-        "sub_sub_type": {
-          "type": "literal",
-          "value": "CDS"
-        },
-        "sub_sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8330209"
-        },
-        "sub_sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8330936"
-        },
-        "faldo_type": {
-          "type": "uri",
-          "value": "http://biohackathon.org/resource/faldo#ForwardStrandPosition"
-        },
-        "strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
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-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "description": {
-          "type": "literal",
-          "value": "solute carrier family 45 member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon."
-        },
-        "sub_name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "sub_description": {
-          "type": "literal",
-          "value": "proton-associated sugar transporter A isoform X1"
-        },
-        "sub_class": {
-          "type": "uri",
-          "value": "http://purl.obolibrary.org/obo/SO_0000316"
-        }
-      },
-      {
-        "uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318085-8344167:1:gene.266"
-        },
-        "type": {
-          "type": "literal",
-          "value": "gene"
-        },
-        "start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318085"
-        },
-        "end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344167"
-        },
-        "sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8318109-8344013:1:CDS.703"
-        },
-        "sub_type": {
-          "type": "literal",
-          "value": "mRNA"
-        },
-        "sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8318109"
-        },
-        "sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8344013"
-        },
-        "sub_sub_uniqueId": {
-          "type": "uri",
-          "value": "http://identifiers.org/refseq/NC_000001.11#feature:8335437-8335614:1:exon-urn:uuid:41f103d9-ed77-41de-b99c-4198bd33bf24"
-        },
-        "sub_sub_type": {
-          "type": "literal",
-          "value": "CDS"
-        },
-        "sub_sub_start": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8335437"
-        },
-        "sub_sub_end": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "8335614"
-        },
-        "faldo_type": {
-          "type": "uri",
-          "value": "http://biohackathon.org/resource/faldo#ForwardStrandPosition"
-        },
-        "strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "sub_sub_strand": {
-          "type": "typed-literal",
-          "datatype": "http://www.w3.org/2001/XMLSchema#integer",
-          "value": "1"
-        },
-        "name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "description": {
-          "type": "literal",
-          "value": "solute carrier family 45 member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon."
-        },
-        "sub_name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "sub_description": {
-          "type": "literal",
-          "value": "proton-associated sugar transporter A isoform X1"
-        },
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-          "value": "solute carrier family 45 member 1; Derived by automated computational analysis using gene prediction method: BestRefSeq,Gnomon."
-        },
-        "sub_name": {
-          "type": "literal",
-          "value": "SLC45A1"
-        },
-        "sub_description": {
-          "type": "literal",
-          "value": "proton-associated sugar transporter A isoform X4"
-        },
-        "sub_class": {
-          "type": "uri",
-          "value": "http://purl.obolibrary.org/obo/SO_0000316"
-        }
-      }
-    ]
-  }
-}