@jbrowse/plugin-linear-genome-view 2.5.0 → 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (279) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -1
  2. package/dist/BaseLinearDisplay/components/Block.d.ts +3 -3
  3. package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +1 -1
  4. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +3 -2
  5. package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -1
  6. package/dist/BaseLinearDisplay/components/Tooltip.d.ts +2 -1
  7. package/dist/BaseLinearDisplay/index.d.ts +5 -2
  8. package/dist/BaseLinearDisplay/index.js +7 -1
  9. package/dist/BaseLinearDisplay/index.js.map +1 -1
  10. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +62 -142
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +34 -355
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  13. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +99 -0
  14. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +190 -0
  15. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js.map +1 -0
  16. package/dist/BaseLinearDisplay/models/TrackHeightMixin.d.ts +30 -0
  17. package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +56 -0
  18. package/dist/BaseLinearDisplay/models/TrackHeightMixin.js.map +1 -0
  19. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +2 -0
  20. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +42 -0
  21. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js.map +1 -0
  22. package/dist/BaseLinearDisplay/models/configSchema.js +1 -0
  23. package/dist/BaseLinearDisplay/models/configSchema.js.map +1 -1
  24. package/dist/BaseLinearDisplay/models/renderSvg.d.ts +8 -0
  25. package/dist/BaseLinearDisplay/models/renderSvg.js +83 -0
  26. package/dist/BaseLinearDisplay/models/renderSvg.js.map +1 -0
  27. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +20 -16
  28. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
  29. package/dist/BasicTrack/configSchema.js +1 -0
  30. package/dist/BasicTrack/configSchema.js.map +1 -1
  31. package/dist/FeatureTrack/configSchema.d.ts +1 -3
  32. package/dist/FeatureTrack/configSchema.js +1 -0
  33. package/dist/FeatureTrack/configSchema.js.map +1 -1
  34. package/dist/LinearBareDisplay/configSchema.d.ts +1 -0
  35. package/dist/LinearBareDisplay/configSchema.js +1 -0
  36. package/dist/LinearBareDisplay/configSchema.js.map +1 -1
  37. package/dist/LinearBareDisplay/model.d.ts +52 -39
  38. package/dist/LinearBareDisplay/model.js +1 -0
  39. package/dist/LinearBareDisplay/model.js.map +1 -1
  40. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +2 -1
  41. package/dist/LinearBasicDisplay/configSchema.d.ts +1 -0
  42. package/dist/LinearBasicDisplay/configSchema.js +1 -0
  43. package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
  44. package/dist/LinearBasicDisplay/model.d.ts +67 -66
  45. package/dist/LinearBasicDisplay/model.js +1 -0
  46. package/dist/LinearBasicDisplay/model.js.map +1 -1
  47. package/dist/LinearGenomeView/components/CenterLine.d.ts +2 -1
  48. package/dist/LinearGenomeView/components/Cytobands.d.ts +2 -1
  49. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -1
  50. package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +2 -1
  51. package/dist/LinearGenomeView/components/Gridlines.d.ts +2 -1
  52. package/dist/LinearGenomeView/components/Header.d.ts +2 -1
  53. package/dist/LinearGenomeView/components/ImportForm.d.ts +2 -1
  54. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +2 -1
  55. package/dist/LinearGenomeView/components/LinearGenomeView.js +28 -4
  56. package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  57. package/dist/LinearGenomeView/components/MiniControls.d.ts +3 -2
  58. package/dist/LinearGenomeView/components/MiniControls.js +20 -40
  59. package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
  60. package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +1 -1
  61. package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +2 -2
  62. package/dist/LinearGenomeView/components/OverviewScalebar.js +10 -4
  63. package/dist/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
  64. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +10 -0
  65. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +22 -0
  66. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js.map +1 -0
  67. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +5 -0
  68. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +52 -0
  69. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js.map +1 -0
  70. package/dist/LinearGenomeView/components/{HelpDialog.d.ts → RefNameAutocomplete/HelpDialog.d.ts} +2 -1
  71. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js.map +1 -0
  72. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +18 -0
  73. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +111 -0
  74. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js.map +1 -0
  75. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +12 -0
  76. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +59 -0
  77. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js.map +1 -0
  78. package/dist/LinearGenomeView/components/Rubberband.d.ts +1 -1
  79. package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +2 -1
  80. package/dist/LinearGenomeView/components/SearchBox.d.ts +2 -1
  81. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +2 -1
  82. package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +2 -1
  83. package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -1
  84. package/dist/LinearGenomeView/components/TrackContainer.d.ts +3 -3
  85. package/dist/LinearGenomeView/components/TrackContainer.js +12 -68
  86. package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -1
  87. package/dist/LinearGenomeView/components/TrackLabel.js +6 -10
  88. package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
  89. package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +9 -0
  90. package/dist/LinearGenomeView/components/TrackLabelContainer.js +32 -0
  91. package/dist/LinearGenomeView/components/TrackLabelContainer.js.map +1 -0
  92. package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +10 -0
  93. package/dist/LinearGenomeView/components/TrackRenderingContainer.js +74 -0
  94. package/dist/LinearGenomeView/components/TrackRenderingContainer.js.map +1 -0
  95. package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  96. package/dist/LinearGenomeView/components/TracksContainer.js +2 -2
  97. package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
  98. package/dist/LinearGenomeView/components/VerticalGuide.d.ts +2 -1
  99. package/dist/LinearGenomeView/components/ZoomControls.d.ts +2 -1
  100. package/dist/LinearGenomeView/model.d.ts +13 -12
  101. package/dist/LinearGenomeView/model.js +25 -25
  102. package/dist/LinearGenomeView/model.js.map +1 -1
  103. package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +2 -1
  104. package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +3 -4
  105. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +7 -2
  106. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -1
  107. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +1 -1
  108. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -1
  109. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +2 -1
  110. package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +2 -1
  111. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +2 -1
  112. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +2 -1
  113. package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +2 -1
  114. package/dist/LinearGenomeView/util.d.ts +2 -2
  115. package/dist/index.d.ts +160 -134
  116. package/dist/index.js +6 -3
  117. package/dist/index.js.map +1 -1
  118. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -1
  119. package/esm/BaseLinearDisplay/components/Block.d.ts +3 -3
  120. package/esm/BaseLinearDisplay/components/BlockMsg.d.ts +1 -1
  121. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +3 -2
  122. package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -1
  123. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +2 -1
  124. package/esm/BaseLinearDisplay/index.d.ts +5 -2
  125. package/esm/BaseLinearDisplay/index.js +3 -0
  126. package/esm/BaseLinearDisplay/index.js.map +1 -1
  127. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +62 -142
  128. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +36 -334
  129. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  130. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +99 -0
  131. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +184 -0
  132. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js.map +1 -0
  133. package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +30 -0
  134. package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +53 -0
  135. package/esm/BaseLinearDisplay/models/TrackHeightMixin.js.map +1 -0
  136. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +2 -0
  137. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +39 -0
  138. package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js.map +1 -0
  139. package/esm/BaseLinearDisplay/models/configSchema.js +1 -0
  140. package/esm/BaseLinearDisplay/models/configSchema.js.map +1 -1
  141. package/esm/BaseLinearDisplay/models/renderSvg.d.ts +8 -0
  142. package/esm/BaseLinearDisplay/models/renderSvg.js +54 -0
  143. package/esm/BaseLinearDisplay/models/renderSvg.js.map +1 -0
  144. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +20 -16
  145. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
  146. package/esm/BasicTrack/configSchema.js +1 -0
  147. package/esm/BasicTrack/configSchema.js.map +1 -1
  148. package/esm/FeatureTrack/configSchema.d.ts +1 -3
  149. package/esm/FeatureTrack/configSchema.js +1 -0
  150. package/esm/FeatureTrack/configSchema.js.map +1 -1
  151. package/esm/LinearBareDisplay/configSchema.d.ts +1 -0
  152. package/esm/LinearBareDisplay/configSchema.js +1 -0
  153. package/esm/LinearBareDisplay/configSchema.js.map +1 -1
  154. package/esm/LinearBareDisplay/model.d.ts +52 -39
  155. package/esm/LinearBareDisplay/model.js +1 -0
  156. package/esm/LinearBareDisplay/model.js.map +1 -1
  157. package/esm/LinearBasicDisplay/components/SetMaxHeight.d.ts +2 -1
  158. package/esm/LinearBasicDisplay/configSchema.d.ts +1 -0
  159. package/esm/LinearBasicDisplay/configSchema.js +1 -0
  160. package/esm/LinearBasicDisplay/configSchema.js.map +1 -1
  161. package/esm/LinearBasicDisplay/model.d.ts +67 -66
  162. package/esm/LinearBasicDisplay/model.js +1 -0
  163. package/esm/LinearBasicDisplay/model.js.map +1 -1
  164. package/esm/LinearGenomeView/components/CenterLine.d.ts +2 -1
  165. package/esm/LinearGenomeView/components/Cytobands.d.ts +2 -1
  166. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -1
  167. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +2 -1
  168. package/esm/LinearGenomeView/components/Gridlines.d.ts +2 -1
  169. package/esm/LinearGenomeView/components/Header.d.ts +2 -1
  170. package/esm/LinearGenomeView/components/ImportForm.d.ts +2 -1
  171. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +2 -1
  172. package/esm/LinearGenomeView/components/LinearGenomeView.js +4 -3
  173. package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  174. package/esm/LinearGenomeView/components/MiniControls.d.ts +3 -2
  175. package/esm/LinearGenomeView/components/MiniControls.js +20 -17
  176. package/esm/LinearGenomeView/components/MiniControls.js.map +1 -1
  177. package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +1 -1
  178. package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +2 -2
  179. package/esm/LinearGenomeView/components/OverviewScalebar.js +10 -4
  180. package/esm/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
  181. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +10 -0
  182. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +16 -0
  183. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js.map +1 -0
  184. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +5 -0
  185. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +23 -0
  186. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js.map +1 -0
  187. package/esm/LinearGenomeView/components/{HelpDialog.d.ts → RefNameAutocomplete/HelpDialog.d.ts} +2 -1
  188. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js.map +1 -0
  189. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +18 -0
  190. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +83 -0
  191. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js.map +1 -0
  192. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +12 -0
  193. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js +50 -0
  194. package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js.map +1 -0
  195. package/esm/LinearGenomeView/components/Rubberband.d.ts +1 -1
  196. package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +2 -1
  197. package/esm/LinearGenomeView/components/SearchBox.d.ts +2 -1
  198. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +2 -1
  199. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +2 -1
  200. package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -1
  201. package/esm/LinearGenomeView/components/TrackContainer.d.ts +3 -3
  202. package/esm/LinearGenomeView/components/TrackContainer.js +13 -69
  203. package/esm/LinearGenomeView/components/TrackContainer.js.map +1 -1
  204. package/esm/LinearGenomeView/components/TrackLabel.js +6 -10
  205. package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
  206. package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts +9 -0
  207. package/esm/LinearGenomeView/components/TrackLabelContainer.js +27 -0
  208. package/esm/LinearGenomeView/components/TrackLabelContainer.js.map +1 -0
  209. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +10 -0
  210. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +49 -0
  211. package/esm/LinearGenomeView/components/TrackRenderingContainer.js.map +1 -0
  212. package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  213. package/esm/LinearGenomeView/components/TracksContainer.js +2 -2
  214. package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -1
  215. package/esm/LinearGenomeView/components/VerticalGuide.d.ts +2 -1
  216. package/esm/LinearGenomeView/components/ZoomControls.d.ts +2 -1
  217. package/esm/LinearGenomeView/model.d.ts +13 -12
  218. package/esm/LinearGenomeView/model.js +21 -21
  219. package/esm/LinearGenomeView/model.js.map +1 -1
  220. package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +2 -1
  221. package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +3 -4
  222. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +7 -2
  223. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -1
  224. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +1 -1
  225. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -1
  226. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +2 -1
  227. package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +2 -1
  228. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +2 -1
  229. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +2 -1
  230. package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +2 -1
  231. package/esm/LinearGenomeView/util.d.ts +2 -2
  232. package/esm/index.d.ts +160 -134
  233. package/esm/index.js +1 -1
  234. package/esm/index.js.map +1 -1
  235. package/package.json +2 -2
  236. package/src/BaseLinearDisplay/index.ts +5 -1
  237. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +46 -407
  238. package/src/BaseLinearDisplay/models/FeatureDensityMixin.tsx +213 -0
  239. package/src/BaseLinearDisplay/models/TrackHeightMixin.tsx +59 -0
  240. package/src/BaseLinearDisplay/models/autorunFeatureDensityStats.ts +46 -0
  241. package/src/BaseLinearDisplay/models/configSchema.ts +1 -0
  242. package/src/BaseLinearDisplay/models/renderSvg.tsx +101 -0
  243. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +21 -19
  244. package/src/BasicTrack/configSchema.ts +1 -0
  245. package/src/FeatureTrack/configSchema.ts +1 -0
  246. package/src/LinearBareDisplay/configSchema.ts +1 -0
  247. package/src/LinearBareDisplay/model.ts +1 -0
  248. package/src/LinearBasicDisplay/configSchema.ts +1 -0
  249. package/src/LinearBasicDisplay/model.ts +1 -0
  250. package/src/LinearGenomeView/components/LinearGenomeView.test.tsx +3 -3
  251. package/src/LinearGenomeView/components/LinearGenomeView.tsx +6 -3
  252. package/src/LinearGenomeView/components/MiniControls.tsx +37 -38
  253. package/src/LinearGenomeView/components/OverviewScalebar.tsx +11 -5
  254. package/src/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.tsx +53 -0
  255. package/src/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.tsx +44 -0
  256. package/src/LinearGenomeView/components/RefNameAutocomplete/index.tsx +160 -0
  257. package/src/LinearGenomeView/components/RefNameAutocomplete/util.ts +65 -0
  258. package/src/LinearGenomeView/components/TrackContainer.tsx +16 -104
  259. package/src/LinearGenomeView/components/TrackLabel.tsx +7 -27
  260. package/src/LinearGenomeView/components/TrackLabelContainer.tsx +48 -0
  261. package/src/LinearGenomeView/components/TrackRenderingContainer.tsx +96 -0
  262. package/src/LinearGenomeView/components/TracksContainer.tsx +2 -2
  263. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +3 -3
  264. package/src/LinearGenomeView/model.ts +29 -28
  265. package/src/LinearGenomeView/svgcomponents/SVGHeader.tsx +8 -6
  266. package/src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx +1 -1
  267. package/src/index.ts +11 -5
  268. package/dist/LinearGenomeView/components/HelpDialog.js.map +0 -1
  269. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +0 -23
  270. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +0 -189
  271. package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +0 -1
  272. package/esm/LinearGenomeView/components/HelpDialog.js.map +0 -1
  273. package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +0 -23
  274. package/esm/LinearGenomeView/components/RefNameAutocomplete.js +0 -161
  275. package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +0 -1
  276. package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +0 -321
  277. /package/dist/LinearGenomeView/components/{HelpDialog.js → RefNameAutocomplete/HelpDialog.js} +0 -0
  278. /package/esm/LinearGenomeView/components/{HelpDialog.js → RefNameAutocomplete/HelpDialog.js} +0 -0
  279. /package/src/LinearGenomeView/components/{HelpDialog.tsx → RefNameAutocomplete/HelpDialog.tsx} +0 -0
package/dist/index.d.ts CHANGED
@@ -10,6 +10,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
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  type: string;
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  rpcDriverName: string | undefined;
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  heightPreConfig: number | undefined;
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+ userBpPerPxLimit: number | undefined;
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+ userByteSizeLimit: number | undefined;
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15
  blockState: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
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  key: import("mobx-state-tree").ISimpleType<string>;
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  region: import("mobx-state-tree").IModelType<{
@@ -101,8 +103,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
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  reload(): void;
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  beforeDestroy(): void;
103
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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- userBpPerPxLimit: number | undefined;
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- userByteSizeLimit: number | undefined;
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  configuration: {
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  [x: string]: any;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
@@ -133,6 +133,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
133
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
134
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  rendererTypeName: string;
135
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  error: unknown;
136
+ message: string | undefined;
136
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  } & {
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  readonly RenderingComponent: import("react").FC<{
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  model: {
@@ -142,6 +143,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
142
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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  rendererTypeName: string;
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  error: unknown;
146
+ message: string | undefined;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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148
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
147
149
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -149,6 +151,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
149
151
  }, {
150
152
  rendererTypeName: string;
151
153
  error: unknown;
154
+ message: string | undefined;
152
155
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
153
156
  onHorizontalScroll?: Function | undefined;
154
157
  blockState?: Record<string, any> | undefined;
@@ -161,6 +164,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
161
164
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
162
165
  rendererTypeName: string;
163
166
  error: unknown;
167
+ message: string | undefined;
164
168
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
165
169
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
166
170
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -168,6 +172,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
168
172
  }, {
169
173
  rendererTypeName: string;
170
174
  error: unknown;
175
+ message: string | undefined;
171
176
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
172
177
  }> | null;
173
178
  readonly adapterConfig: any;
@@ -177,21 +182,49 @@ export default class LinearGenomeViewPlugin extends Plugin {
177
182
  readonly DisplayMessageComponent: import("react").FC<any> | undefined;
178
183
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
179
184
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
180
- regionCannotBeRendered(): undefined;
185
+ regionCannotBeRendered(): null;
181
186
  } & {
187
+ setMessage(arg?: string | undefined): void;
182
188
  setError(error?: unknown): void;
183
189
  setRpcDriverName(rpcDriverName: string): void;
184
190
  reload(): void;
185
191
  } & {
186
- currBpPerPx: number;
187
192
  scrollTop: number;
188
- message: string;
189
- featureIdUnderMouse: string | undefined;
190
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
193
+ } & {
194
+ readonly height: number;
195
+ } & {
196
+ setScrollTop(scrollTop: number): void;
197
+ setHeight(displayHeight: number): number;
198
+ resizeHeight(distance: number): number;
199
+ } & {
191
200
  featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
192
201
  featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
202
+ currStatsBpPerPx: number;
203
+ } & {
204
+ readonly currentBytesRequested: number;
205
+ readonly currentFeatureScreenDensity: number;
206
+ readonly maxFeatureScreenDensity: any;
207
+ readonly featureDensityStatsReady: boolean;
208
+ readonly maxAllowableBytes: number;
209
+ } & {
210
+ afterAttach(): void;
211
+ } & {
212
+ setCurrStatsBpPerPx(n: number): void;
213
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
214
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
215
+ setFeatureDensityStatsP(arg: any): void;
216
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
217
+ clearFeatureDensityStats(): void;
218
+ } & {
219
+ readonly regionTooLarge: boolean;
220
+ readonly regionTooLargeReason: string;
221
+ } & {
222
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
223
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
224
+ } & {
225
+ featureIdUnderMouse: string | undefined;
226
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
193
227
  } & {
194
- readonly height: number;
195
228
  readonly blockType: "dynamicBlocks" | "staticBlocks";
196
229
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
197
230
  } & {
@@ -205,55 +238,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
205
238
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
206
239
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
207
240
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
208
- readonly currentBytesRequested: number;
209
- readonly currentFeatureScreenDensity: number;
210
- readonly maxFeatureScreenDensity: any;
211
- readonly featureDensityStatsReady: boolean;
212
- readonly maxAllowableBytes: number;
213
- } & {
214
- setMessage(message: string): void;
215
241
  } & {
216
- afterAttach(): void;
217
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
218
- setFeatureDensityStatsP(arg: any): void;
219
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
220
- clearFeatureDensityStats(): void;
221
- setHeight(displayHeight: number): number;
222
- resizeHeight(distance: number): number;
223
- setScrollTop(scrollTop: number): void;
224
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
225
242
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
226
- setCurrBpPerPx(n: number): void;
227
243
  deleteBlock(key: string): void;
228
244
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
229
245
  clearFeatureSelection(): void;
230
246
  setFeatureIdUnderMouse(feature?: string | undefined): void;
231
- reload(): void;
232
247
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
233
- } & {
234
- readonly regionTooLarge: boolean;
235
- readonly regionTooLargeReason: string;
236
248
  } & {
237
249
  reload(): Promise<void>;
238
250
  } & {
239
- afterAttach(): void;
240
- } & {
241
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
242
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
243
251
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
244
252
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
245
253
  renderProps(): any;
246
254
  } & {
247
- renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
248
- overrideHeight: number;
249
- theme: import("@mui/material").ThemeOptions;
250
- }): Promise<JSX.Element>;
255
+ renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
256
+ afterAttach(): void;
251
257
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
252
258
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
253
259
  type: import("mobx-state-tree").ISimpleType<string>;
254
260
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
255
261
  } & {
256
262
  heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
263
+ } & {
264
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
265
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
266
+ } & {
257
267
  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
258
268
  key: import("mobx-state-tree").ISimpleType<string>;
259
269
  region: import("mobx-state-tree").IModelType<{
@@ -300,8 +310,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
300
310
  reload(): void;
301
311
  beforeDestroy(): void;
302
312
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
303
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
304
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
305
313
  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
306
314
  maxFeatureScreenDensity: {
307
315
  type: string;
@@ -328,6 +336,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
328
336
  }, {
329
337
  rendererTypeName: string;
330
338
  error: unknown;
339
+ message: string | undefined;
331
340
  } & {
332
341
  readonly RenderingComponent: import("react").FC<{
333
342
  model: {
@@ -337,6 +346,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
337
346
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
338
347
  rendererTypeName: string;
339
348
  error: unknown;
349
+ message: string | undefined;
340
350
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
341
351
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
342
352
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -344,6 +354,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
344
354
  }, {
345
355
  rendererTypeName: string;
346
356
  error: unknown;
357
+ message: string | undefined;
347
358
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
348
359
  onHorizontalScroll?: Function | undefined;
349
360
  blockState?: Record<string, any> | undefined;
@@ -356,6 +367,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
356
367
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
357
368
  rendererTypeName: string;
358
369
  error: unknown;
370
+ message: string | undefined;
359
371
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
360
372
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
361
373
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -363,6 +375,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
363
375
  }, {
364
376
  rendererTypeName: string;
365
377
  error: unknown;
378
+ message: string | undefined;
366
379
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
367
380
  }> | null;
368
381
  readonly adapterConfig: any;
@@ -372,21 +385,49 @@ export default class LinearGenomeViewPlugin extends Plugin {
372
385
  readonly DisplayMessageComponent: import("react").FC<any> | undefined;
373
386
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
374
387
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
375
- regionCannotBeRendered(): undefined;
388
+ regionCannotBeRendered(): null;
376
389
  } & {
390
+ setMessage(arg?: string | undefined): void;
377
391
  setError(error?: unknown): void;
378
392
  setRpcDriverName(rpcDriverName: string): void;
379
393
  reload(): void;
380
394
  } & {
381
- currBpPerPx: number;
382
395
  scrollTop: number;
383
- message: string;
384
- featureIdUnderMouse: string | undefined;
385
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
396
+ } & {
397
+ readonly height: number;
398
+ } & {
399
+ setScrollTop(scrollTop: number): void;
400
+ setHeight(displayHeight: number): number;
401
+ resizeHeight(distance: number): number;
402
+ } & {
386
403
  featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
387
404
  featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
405
+ currStatsBpPerPx: number;
406
+ } & {
407
+ readonly currentBytesRequested: number;
408
+ readonly currentFeatureScreenDensity: number;
409
+ readonly maxFeatureScreenDensity: any;
410
+ readonly featureDensityStatsReady: boolean;
411
+ readonly maxAllowableBytes: number;
412
+ } & {
413
+ afterAttach(): void;
414
+ } & {
415
+ setCurrStatsBpPerPx(n: number): void;
416
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
417
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
418
+ setFeatureDensityStatsP(arg: any): void;
419
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
420
+ clearFeatureDensityStats(): void;
421
+ } & {
422
+ readonly regionTooLarge: boolean;
423
+ readonly regionTooLargeReason: string;
424
+ } & {
425
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
426
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
427
+ } & {
428
+ featureIdUnderMouse: string | undefined;
429
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
388
430
  } & {
389
- readonly height: number;
390
431
  readonly blockType: "dynamicBlocks" | "staticBlocks";
391
432
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
392
433
  } & {
@@ -400,55 +441,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
400
441
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
401
442
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
402
443
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
403
- readonly currentBytesRequested: number;
404
- readonly currentFeatureScreenDensity: number;
405
- readonly maxFeatureScreenDensity: any;
406
- readonly featureDensityStatsReady: boolean;
407
- readonly maxAllowableBytes: number;
408
444
  } & {
409
- setMessage(message: string): void;
410
- } & {
411
- afterAttach(): void;
412
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
413
- setFeatureDensityStatsP(arg: any): void;
414
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
415
- clearFeatureDensityStats(): void;
416
- setHeight(displayHeight: number): number;
417
- resizeHeight(distance: number): number;
418
- setScrollTop(scrollTop: number): void;
419
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
420
445
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
421
- setCurrBpPerPx(n: number): void;
422
446
  deleteBlock(key: string): void;
423
447
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
424
448
  clearFeatureSelection(): void;
425
449
  setFeatureIdUnderMouse(feature?: string | undefined): void;
426
- reload(): void;
427
450
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
428
- } & {
429
- readonly regionTooLarge: boolean;
430
- readonly regionTooLargeReason: string;
431
451
  } & {
432
452
  reload(): Promise<void>;
433
453
  } & {
434
- afterAttach(): void;
435
- } & {
436
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
437
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
438
454
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
439
455
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
440
456
  renderProps(): any;
441
457
  } & {
442
- renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
443
- overrideHeight: number;
444
- theme: import("@mui/material").ThemeOptions;
445
- }): Promise<JSX.Element>;
458
+ renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
459
+ afterAttach(): void;
446
460
  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
447
461
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
448
462
  type: import("mobx-state-tree").ISimpleType<string>;
449
463
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
450
464
  } & {
451
465
  heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
466
+ } & {
467
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
468
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
469
+ } & {
452
470
  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
453
471
  key: import("mobx-state-tree").ISimpleType<string>;
454
472
  region: import("mobx-state-tree").IModelType<{
@@ -495,8 +513,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
495
513
  reload(): void;
496
514
  beforeDestroy(): void;
497
515
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
498
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
499
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
500
516
  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
501
517
  maxFeatureScreenDensity: {
502
518
  type: string;
@@ -530,13 +546,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
530
546
  userByteSizeLimit: number | undefined;
531
547
  }>>;
532
548
  children?: import("react").ReactNode;
533
- }) => JSX.Element;
549
+ }) => import("react").JSX.Element;
534
550
  BaseLinearDisplay: import("mobx-state-tree").IModelType<{
535
551
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
536
552
  type: import("mobx-state-tree").ISimpleType<string>;
537
553
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
538
554
  } & {
539
555
  heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
556
+ } & {
557
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
558
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
559
+ } & {
540
560
  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
541
561
  key: import("mobx-state-tree").ISimpleType<string>;
542
562
  region: import("mobx-state-tree").IModelType<{
@@ -583,8 +603,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
583
603
  reload(): void;
584
604
  beforeDestroy(): void;
585
605
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
586
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
587
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
588
606
  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
589
607
  maxFeatureScreenDensity: {
590
608
  type: string;
@@ -611,6 +629,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
611
629
  }, {
612
630
  rendererTypeName: string;
613
631
  error: unknown;
632
+ message: string | undefined;
614
633
  } & {
615
634
  readonly RenderingComponent: import("react").FC<{
616
635
  model: {
@@ -620,6 +639,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
620
639
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
621
640
  rendererTypeName: string;
622
641
  error: unknown;
642
+ message: string | undefined;
623
643
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
624
644
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
625
645
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -627,6 +647,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
627
647
  }, {
628
648
  rendererTypeName: string;
629
649
  error: unknown;
650
+ message: string | undefined;
630
651
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
631
652
  onHorizontalScroll?: Function | undefined;
632
653
  blockState?: Record<string, any> | undefined;
@@ -639,6 +660,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
639
660
  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
640
661
  rendererTypeName: string;
641
662
  error: unknown;
663
+ message: string | undefined;
642
664
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
643
665
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
644
666
  type: import("mobx-state-tree").ISimpleType<string>;
@@ -646,6 +668,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
646
668
  }, {
647
669
  rendererTypeName: string;
648
670
  error: unknown;
671
+ message: string | undefined;
649
672
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
650
673
  }> | null;
651
674
  readonly adapterConfig: any;
@@ -655,21 +678,49 @@ export default class LinearGenomeViewPlugin extends Plugin {
655
678
  readonly DisplayMessageComponent: import("react").FC<any> | undefined;
656
679
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
657
680
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
658
- regionCannotBeRendered(): undefined;
681
+ regionCannotBeRendered(): null;
659
682
  } & {
683
+ setMessage(arg?: string | undefined): void;
660
684
  setError(error?: unknown): void;
661
685
  setRpcDriverName(rpcDriverName: string): void;
662
686
  reload(): void;
663
687
  } & {
664
- currBpPerPx: number;
665
688
  scrollTop: number;
666
- message: string;
667
- featureIdUnderMouse: string | undefined;
668
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
689
+ } & {
690
+ readonly height: number;
691
+ } & {
692
+ setScrollTop(scrollTop: number): void;
693
+ setHeight(displayHeight: number): number;
694
+ resizeHeight(distance: number): number;
695
+ } & {
669
696
  featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
670
697
  featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
698
+ currStatsBpPerPx: number;
699
+ } & {
700
+ readonly currentBytesRequested: number;
701
+ readonly currentFeatureScreenDensity: number;
702
+ readonly maxFeatureScreenDensity: any;
703
+ readonly featureDensityStatsReady: boolean;
704
+ readonly maxAllowableBytes: number;
705
+ } & {
706
+ afterAttach(): void;
707
+ } & {
708
+ setCurrStatsBpPerPx(n: number): void;
709
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
710
+ getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
711
+ setFeatureDensityStatsP(arg: any): void;
712
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
713
+ clearFeatureDensityStats(): void;
714
+ } & {
715
+ readonly regionTooLarge: boolean;
716
+ readonly regionTooLargeReason: string;
717
+ } & {
718
+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
719
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
720
+ } & {
721
+ featureIdUnderMouse: string | undefined;
722
+ contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
671
723
  } & {
672
- readonly height: number;
673
724
  readonly blockType: "dynamicBlocks" | "staticBlocks";
674
725
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
675
726
  } & {
@@ -683,55 +734,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
683
734
  getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
684
735
  getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
685
736
  searchFeatureByID(id: string): [number, number, number, number] | undefined;
686
- readonly currentBytesRequested: number;
687
- readonly currentFeatureScreenDensity: number;
688
- readonly maxFeatureScreenDensity: any;
689
- readonly featureDensityStatsReady: boolean;
690
- readonly maxAllowableBytes: number;
691
737
  } & {
692
- setMessage(message: string): void;
693
- } & {
694
- afterAttach(): void;
695
- getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
696
- setFeatureDensityStatsP(arg: any): void;
697
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
698
- clearFeatureDensityStats(): void;
699
- setHeight(displayHeight: number): number;
700
- resizeHeight(distance: number): number;
701
- setScrollTop(scrollTop: number): void;
702
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
703
738
  addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
704
- setCurrBpPerPx(n: number): void;
705
739
  deleteBlock(key: string): void;
706
740
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
707
741
  clearFeatureSelection(): void;
708
742
  setFeatureIdUnderMouse(feature?: string | undefined): void;
709
- reload(): void;
710
743
  setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
711
- } & {
712
- readonly regionTooLarge: boolean;
713
- readonly regionTooLargeReason: string;
714
744
  } & {
715
745
  reload(): Promise<void>;
716
746
  } & {
717
- afterAttach(): void;
718
- } & {
719
- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
720
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
721
747
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
722
748
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
723
749
  renderProps(): any;
724
750
  } & {
725
- renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
726
- overrideHeight: number;
727
- theme: import("@mui/material").ThemeOptions;
728
- }): Promise<JSX.Element>;
751
+ renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
752
+ afterAttach(): void;
729
753
  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
730
754
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
731
755
  type: import("mobx-state-tree").ISimpleType<string>;
732
756
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
733
757
  } & {
734
758
  heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
759
+ } & {
760
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
761
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
762
+ } & {
735
763
  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
736
764
  key: import("mobx-state-tree").ISimpleType<string>;
737
765
  region: import("mobx-state-tree").IModelType<{
@@ -778,8 +806,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
778
806
  reload(): void;
779
807
  beforeDestroy(): void;
780
808
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
781
- userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
782
- userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
783
809
  configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
784
810
  maxFeatureScreenDensity: {
785
811
  type: string;
@@ -888,7 +914,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
888
914
  afterDisplayedRegionsSetCallbacks: Function[];
889
915
  scaleFactor: number;
890
916
  trackRefs: {
891
- [key: string]: any;
917
+ [key: string]: HTMLDivElement;
892
918
  };
893
919
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
894
920
  coarseTotalBp: number;
@@ -947,7 +973,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
947
973
  moveTrack(movingId: string, targetId: string): void;
948
974
  closeView(): void;
949
975
  toggleTrack(trackId: string): void;
950
- setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
976
+ setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
951
977
  toggleCenterLine(): void;
952
978
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
953
979
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1076,7 +1102,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1076
1102
  afterDisplayedRegionsSetCallbacks: Function[];
1077
1103
  scaleFactor: number;
1078
1104
  trackRefs: {
1079
- [key: string]: any;
1105
+ [key: string]: HTMLDivElement;
1080
1106
  };
1081
1107
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
1082
1108
  coarseTotalBp: number;
@@ -1135,7 +1161,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1135
1161
  moveTrack(movingId: string, targetId: string): void;
1136
1162
  closeView(): void;
1137
1163
  toggleTrack(trackId: string): void;
1138
- setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1164
+ setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1139
1165
  toggleCenterLine(): void;
1140
1166
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1141
1167
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1221,7 +1247,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1221
1247
  reversed: boolean;
1222
1248
  } | undefined;
1223
1249
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1224
- }) => JSX.Element;
1250
+ }) => import("react").JSX.Element;
1225
1251
  ZoomControls: ({ model }: {
1226
1252
  model: {
1227
1253
  id: string;
@@ -1274,7 +1300,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1274
1300
  afterDisplayedRegionsSetCallbacks: Function[];
1275
1301
  scaleFactor: number;
1276
1302
  trackRefs: {
1277
- [key: string]: any;
1303
+ [key: string]: HTMLDivElement;
1278
1304
  };
1279
1305
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
1280
1306
  coarseTotalBp: number;
@@ -1333,7 +1359,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1333
1359
  moveTrack(movingId: string, targetId: string): void;
1334
1360
  closeView(): void;
1335
1361
  toggleTrack(trackId: string): void;
1336
- setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1362
+ setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1337
1363
  toggleCenterLine(): void;
1338
1364
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1339
1365
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1462,7 +1488,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1462
1488
  afterDisplayedRegionsSetCallbacks: Function[];
1463
1489
  scaleFactor: number;
1464
1490
  trackRefs: {
1465
- [key: string]: any;
1491
+ [key: string]: HTMLDivElement;
1466
1492
  };
1467
1493
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
1468
1494
  coarseTotalBp: number;
@@ -1521,7 +1547,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1521
1547
  moveTrack(movingId: string, targetId: string): void;
1522
1548
  closeView(): void;
1523
1549
  toggleTrack(trackId: string): void;
1524
- setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1550
+ setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1525
1551
  toggleCenterLine(): void;
1526
1552
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1527
1553
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1607,7 +1633,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1607
1633
  reversed: boolean;
1608
1634
  } | undefined;
1609
1635
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1610
- }) => JSX.Element;
1636
+ }) => import("react").JSX.Element;
1611
1637
  LinearGenomeView: ({ model }: {
1612
1638
  model: {
1613
1639
  id: string;
@@ -1660,7 +1686,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1660
1686
  afterDisplayedRegionsSetCallbacks: Function[];
1661
1687
  scaleFactor: number;
1662
1688
  trackRefs: {
1663
- [key: string]: any;
1689
+ [key: string]: HTMLDivElement;
1664
1690
  };
1665
1691
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
1666
1692
  coarseTotalBp: number;
@@ -1719,7 +1745,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1719
1745
  moveTrack(movingId: string, targetId: string): void;
1720
1746
  closeView(): void;
1721
1747
  toggleTrack(trackId: string): void;
1722
- setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1748
+ setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1723
1749
  toggleCenterLine(): void;
1724
1750
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1725
1751
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1848,7 +1874,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1848
1874
  afterDisplayedRegionsSetCallbacks: Function[];
1849
1875
  scaleFactor: number;
1850
1876
  trackRefs: {
1851
- [key: string]: any;
1877
+ [key: string]: HTMLDivElement;
1852
1878
  };
1853
1879
  coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
1854
1880
  coarseTotalBp: number;
@@ -1907,7 +1933,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1907
1933
  moveTrack(movingId: string, targetId: string): void;
1908
1934
  closeView(): void;
1909
1935
  toggleTrack(trackId: string): void;
1910
- setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1936
+ setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1911
1937
  toggleCenterLine(): void;
1912
1938
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1913
1939
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1993,14 +2019,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
1993
2019
  reversed: boolean;
1994
2020
  } | undefined;
1995
2021
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
1996
- }) => JSX.Element;
2022
+ }) => import("react").JSX.Element;
1997
2023
  };
1998
2024
  install(pluginManager: PluginManager): void;
1999
2025
  configure(pluginManager: PluginManager): void;
2000
2026
  }
2001
- export type { BaseLinearDisplayModel, BlockModel } from './BaseLinearDisplay';
2027
+ export type { ExportSvgDisplayOptions, BaseLinearDisplayModel, BlockModel, } from './BaseLinearDisplay';
2002
2028
  export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
2003
- export { BlockMsg, baseLinearDisplayConfigSchema, BaseLinearDisplayComponent, BaseLinearDisplay, } from './BaseLinearDisplay';
2004
- export { type LinearGenomeViewModel, RefNameAutocomplete, type LinearGenomeViewStateModel, SearchBox, } from './LinearGenomeView';
2029
+ export { baseLinearDisplayConfigSchema, BaseLinearDisplay, BlockMsg, BaseLinearDisplayComponent, TrackHeightMixin, FeatureDensityMixin, TooLargeMessage, } from './BaseLinearDisplay';
2030
+ export { type LinearGenomeViewModel, type LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
2005
2031
  export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
2006
2032
  export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';