@jbrowse/plugin-linear-genome-view 2.5.0 → 2.6.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -1
- package/dist/BaseLinearDisplay/components/Block.d.ts +3 -3
- package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +1 -1
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +3 -2
- package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -1
- package/dist/BaseLinearDisplay/components/Tooltip.d.ts +2 -1
- package/dist/BaseLinearDisplay/index.d.ts +5 -2
- package/dist/BaseLinearDisplay/index.js +7 -1
- package/dist/BaseLinearDisplay/index.js.map +1 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +62 -142
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +34 -355
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +99 -0
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +190 -0
- package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js.map +1 -0
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.d.ts +30 -0
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +56 -0
- package/dist/BaseLinearDisplay/models/TrackHeightMixin.js.map +1 -0
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +2 -0
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +42 -0
- package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js.map +1 -0
- package/dist/BaseLinearDisplay/models/configSchema.js +1 -0
- package/dist/BaseLinearDisplay/models/configSchema.js.map +1 -1
- package/dist/BaseLinearDisplay/models/renderSvg.d.ts +8 -0
- package/dist/BaseLinearDisplay/models/renderSvg.js +83 -0
- package/dist/BaseLinearDisplay/models/renderSvg.js.map +1 -0
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +20 -16
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/dist/BasicTrack/configSchema.js +1 -0
- package/dist/BasicTrack/configSchema.js.map +1 -1
- package/dist/FeatureTrack/configSchema.d.ts +1 -3
- package/dist/FeatureTrack/configSchema.js +1 -0
- package/dist/FeatureTrack/configSchema.js.map +1 -1
- package/dist/LinearBareDisplay/configSchema.d.ts +1 -0
- package/dist/LinearBareDisplay/configSchema.js +1 -0
- package/dist/LinearBareDisplay/configSchema.js.map +1 -1
- package/dist/LinearBareDisplay/model.d.ts +52 -39
- package/dist/LinearBareDisplay/model.js +1 -0
- package/dist/LinearBareDisplay/model.js.map +1 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +2 -1
- package/dist/LinearBasicDisplay/configSchema.d.ts +1 -0
- package/dist/LinearBasicDisplay/configSchema.js +1 -0
- package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
- package/dist/LinearBasicDisplay/model.d.ts +67 -66
- package/dist/LinearBasicDisplay/model.js +1 -0
- package/dist/LinearBasicDisplay/model.js.map +1 -1
- package/dist/LinearGenomeView/components/CenterLine.d.ts +2 -1
- package/dist/LinearGenomeView/components/Cytobands.d.ts +2 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +2 -1
- package/dist/LinearGenomeView/components/Gridlines.d.ts +2 -1
- package/dist/LinearGenomeView/components/Header.d.ts +2 -1
- package/dist/LinearGenomeView/components/ImportForm.d.ts +2 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +2 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +28 -4
- package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/dist/LinearGenomeView/components/MiniControls.d.ts +3 -2
- package/dist/LinearGenomeView/components/MiniControls.js +20 -40
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +1 -1
- package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +2 -2
- package/dist/LinearGenomeView/components/OverviewScalebar.js +10 -4
- package/dist/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +10 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +22 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js.map +1 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +5 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +52 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js.map +1 -0
- package/dist/LinearGenomeView/components/{HelpDialog.d.ts → RefNameAutocomplete/HelpDialog.d.ts} +2 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +18 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +111 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js.map +1 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +12 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +59 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js.map +1 -0
- package/dist/LinearGenomeView/components/Rubberband.d.ts +1 -1
- package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +2 -1
- package/dist/LinearGenomeView/components/SearchBox.d.ts +2 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +2 -1
- package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +2 -1
- package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -1
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +3 -3
- package/dist/LinearGenomeView/components/TrackContainer.js +12 -68
- package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +6 -10
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +9 -0
- package/dist/LinearGenomeView/components/TrackLabelContainer.js +32 -0
- package/dist/LinearGenomeView/components/TrackLabelContainer.js.map +1 -0
- package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +10 -0
- package/dist/LinearGenomeView/components/TrackRenderingContainer.js +74 -0
- package/dist/LinearGenomeView/components/TrackRenderingContainer.js.map +1 -0
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.js +2 -2
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/VerticalGuide.d.ts +2 -1
- package/dist/LinearGenomeView/components/ZoomControls.d.ts +2 -1
- package/dist/LinearGenomeView/model.d.ts +13 -12
- package/dist/LinearGenomeView/model.js +25 -25
- package/dist/LinearGenomeView/model.js.map +1 -1
- package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +3 -4
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +7 -2
- package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -1
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +1 -1
- package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -1
- package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +2 -1
- package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +2 -1
- package/dist/LinearGenomeView/util.d.ts +2 -2
- package/dist/index.d.ts +160 -134
- package/dist/index.js +6 -3
- package/dist/index.js.map +1 -1
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -1
- package/esm/BaseLinearDisplay/components/Block.d.ts +3 -3
- package/esm/BaseLinearDisplay/components/BlockMsg.d.ts +1 -1
- package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +3 -2
- package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -1
- package/esm/BaseLinearDisplay/components/Tooltip.d.ts +2 -1
- package/esm/BaseLinearDisplay/index.d.ts +5 -2
- package/esm/BaseLinearDisplay/index.js +3 -0
- package/esm/BaseLinearDisplay/index.js.map +1 -1
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +62 -142
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +36 -334
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +99 -0
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +184 -0
- package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js.map +1 -0
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.d.ts +30 -0
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.js +53 -0
- package/esm/BaseLinearDisplay/models/TrackHeightMixin.js.map +1 -0
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.d.ts +2 -0
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js +39 -0
- package/esm/BaseLinearDisplay/models/autorunFeatureDensityStats.js.map +1 -0
- package/esm/BaseLinearDisplay/models/configSchema.js +1 -0
- package/esm/BaseLinearDisplay/models/configSchema.js.map +1 -1
- package/esm/BaseLinearDisplay/models/renderSvg.d.ts +8 -0
- package/esm/BaseLinearDisplay/models/renderSvg.js +54 -0
- package/esm/BaseLinearDisplay/models/renderSvg.js.map +1 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +20 -16
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/esm/BasicTrack/configSchema.js +1 -0
- package/esm/BasicTrack/configSchema.js.map +1 -1
- package/esm/FeatureTrack/configSchema.d.ts +1 -3
- package/esm/FeatureTrack/configSchema.js +1 -0
- package/esm/FeatureTrack/configSchema.js.map +1 -1
- package/esm/LinearBareDisplay/configSchema.d.ts +1 -0
- package/esm/LinearBareDisplay/configSchema.js +1 -0
- package/esm/LinearBareDisplay/configSchema.js.map +1 -1
- package/esm/LinearBareDisplay/model.d.ts +52 -39
- package/esm/LinearBareDisplay/model.js +1 -0
- package/esm/LinearBareDisplay/model.js.map +1 -1
- package/esm/LinearBasicDisplay/components/SetMaxHeight.d.ts +2 -1
- package/esm/LinearBasicDisplay/configSchema.d.ts +1 -0
- package/esm/LinearBasicDisplay/configSchema.js +1 -0
- package/esm/LinearBasicDisplay/configSchema.js.map +1 -1
- package/esm/LinearBasicDisplay/model.d.ts +67 -66
- package/esm/LinearBasicDisplay/model.js +1 -0
- package/esm/LinearBasicDisplay/model.js.map +1 -1
- package/esm/LinearGenomeView/components/CenterLine.d.ts +2 -1
- package/esm/LinearGenomeView/components/Cytobands.d.ts +2 -1
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +2 -1
- package/esm/LinearGenomeView/components/Gridlines.d.ts +2 -1
- package/esm/LinearGenomeView/components/Header.d.ts +2 -1
- package/esm/LinearGenomeView/components/ImportForm.d.ts +2 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +2 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +4 -3
- package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/esm/LinearGenomeView/components/MiniControls.d.ts +3 -2
- package/esm/LinearGenomeView/components/MiniControls.js +20 -17
- package/esm/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +1 -1
- package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +2 -2
- package/esm/LinearGenomeView/components/OverviewScalebar.js +10 -4
- package/esm/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +10 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +16 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js.map +1 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +5 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +23 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js.map +1 -0
- package/esm/LinearGenomeView/components/{HelpDialog.d.ts → RefNameAutocomplete/HelpDialog.d.ts} +2 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +18 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +83 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js.map +1 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/util.d.ts +12 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js +50 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete/util.js.map +1 -0
- package/esm/LinearGenomeView/components/Rubberband.d.ts +1 -1
- package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +2 -1
- package/esm/LinearGenomeView/components/SearchBox.d.ts +2 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +2 -1
- package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +2 -1
- package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts +2 -1
- package/esm/LinearGenomeView/components/TrackContainer.d.ts +3 -3
- package/esm/LinearGenomeView/components/TrackContainer.js +13 -69
- package/esm/LinearGenomeView/components/TrackContainer.js.map +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js +6 -10
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts +9 -0
- package/esm/LinearGenomeView/components/TrackLabelContainer.js +27 -0
- package/esm/LinearGenomeView/components/TrackLabelContainer.js.map +1 -0
- package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +10 -0
- package/esm/LinearGenomeView/components/TrackRenderingContainer.js +49 -0
- package/esm/LinearGenomeView/components/TrackRenderingContainer.js.map +1 -0
- package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -1
- package/esm/LinearGenomeView/components/TracksContainer.js +2 -2
- package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/esm/LinearGenomeView/components/VerticalGuide.d.ts +2 -1
- package/esm/LinearGenomeView/components/ZoomControls.d.ts +2 -1
- package/esm/LinearGenomeView/model.d.ts +13 -12
- package/esm/LinearGenomeView/model.js +21 -21
- package/esm/LinearGenomeView/model.js.map +1 -1
- package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +3 -4
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +7 -2
- package/esm/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -1
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +1 -1
- package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -1
- package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +2 -1
- package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +2 -1
- package/esm/LinearGenomeView/util.d.ts +2 -2
- package/esm/index.d.ts +160 -134
- package/esm/index.js +1 -1
- package/esm/index.js.map +1 -1
- package/package.json +2 -2
- package/src/BaseLinearDisplay/index.ts +5 -1
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +46 -407
- package/src/BaseLinearDisplay/models/FeatureDensityMixin.tsx +213 -0
- package/src/BaseLinearDisplay/models/TrackHeightMixin.tsx +59 -0
- package/src/BaseLinearDisplay/models/autorunFeatureDensityStats.ts +46 -0
- package/src/BaseLinearDisplay/models/configSchema.ts +1 -0
- package/src/BaseLinearDisplay/models/renderSvg.tsx +101 -0
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +21 -19
- package/src/BasicTrack/configSchema.ts +1 -0
- package/src/FeatureTrack/configSchema.ts +1 -0
- package/src/LinearBareDisplay/configSchema.ts +1 -0
- package/src/LinearBareDisplay/model.ts +1 -0
- package/src/LinearBasicDisplay/configSchema.ts +1 -0
- package/src/LinearBasicDisplay/model.ts +1 -0
- package/src/LinearGenomeView/components/LinearGenomeView.test.tsx +3 -3
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +6 -3
- package/src/LinearGenomeView/components/MiniControls.tsx +37 -38
- package/src/LinearGenomeView/components/OverviewScalebar.tsx +11 -5
- package/src/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.tsx +53 -0
- package/src/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.tsx +44 -0
- package/src/LinearGenomeView/components/RefNameAutocomplete/index.tsx +160 -0
- package/src/LinearGenomeView/components/RefNameAutocomplete/util.ts +65 -0
- package/src/LinearGenomeView/components/TrackContainer.tsx +16 -104
- package/src/LinearGenomeView/components/TrackLabel.tsx +7 -27
- package/src/LinearGenomeView/components/TrackLabelContainer.tsx +48 -0
- package/src/LinearGenomeView/components/TrackRenderingContainer.tsx +96 -0
- package/src/LinearGenomeView/components/TracksContainer.tsx +2 -2
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +3 -3
- package/src/LinearGenomeView/model.ts +29 -28
- package/src/LinearGenomeView/svgcomponents/SVGHeader.tsx +8 -6
- package/src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx +1 -1
- package/src/index.ts +11 -5
- package/dist/LinearGenomeView/components/HelpDialog.js.map +0 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +0 -23
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +0 -189
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +0 -1
- package/esm/LinearGenomeView/components/HelpDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +0 -23
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +0 -161
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +0 -1
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +0 -321
- /package/dist/LinearGenomeView/components/{HelpDialog.js → RefNameAutocomplete/HelpDialog.js} +0 -0
- /package/esm/LinearGenomeView/components/{HelpDialog.js → RefNameAutocomplete/HelpDialog.js} +0 -0
- /package/src/LinearGenomeView/components/{HelpDialog.tsx → RefNameAutocomplete/HelpDialog.tsx} +0 -0
package/dist/index.d.ts
CHANGED
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@@ -10,6 +10,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
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type: string;
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rpcDriverName: string | undefined;
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heightPreConfig: number | undefined;
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userBpPerPxLimit: number | undefined;
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userByteSizeLimit: number | undefined;
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blockState: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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@@ -101,8 +103,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
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userBpPerPxLimit: number | undefined;
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userByteSizeLimit: number | undefined;
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configuration: {
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[x: string]: any;
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: {
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@@ -142,6 +143,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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@@ -149,6 +151,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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}, {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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blockState?: Record<string, any> | undefined;
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@@ -161,6 +164,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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@@ -168,6 +172,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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}, {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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regionCannotBeRendered():
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regionCannotBeRendered(): null;
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} & {
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setMessage(arg?: string | undefined): void;
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setError(error?: unknown): void;
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setRpcDriverName(rpcDriverName: string): void;
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reload(): void;
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} & {
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currBpPerPx: number;
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scrollTop: number;
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} & {
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readonly height: number;
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} & {
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setScrollTop(scrollTop: number): void;
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setHeight(displayHeight: number): number;
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resizeHeight(distance: number): number;
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} & {
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featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
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featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
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currStatsBpPerPx: number;
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} & {
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readonly currentBytesRequested: number;
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readonly currentFeatureScreenDensity: number;
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readonly maxFeatureScreenDensity: any;
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readonly featureDensityStatsReady: boolean;
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readonly maxAllowableBytes: number;
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} & {
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afterAttach(): void;
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} & {
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setCurrStatsBpPerPx(n: number): void;
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setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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setFeatureDensityStatsP(arg: any): void;
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setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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clearFeatureDensityStats(): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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} & {
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
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} & {
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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} & {
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readonly height: number;
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readonly blockType: "dynamicBlocks" | "staticBlocks";
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
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} & {
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@@ -205,55 +238,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
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getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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readonly currentBytesRequested: number;
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readonly currentFeatureScreenDensity: number;
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readonly maxFeatureScreenDensity: any;
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readonly featureDensityStatsReady: boolean;
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readonly maxAllowableBytes: number;
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setMessage(message: string): void;
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} & {
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afterAttach(): void;
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getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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setFeatureDensityStatsP(arg: any): void;
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setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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clearFeatureDensityStats(): void;
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setHeight(displayHeight: number): number;
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resizeHeight(distance: number): number;
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setScrollTop(scrollTop: number): void;
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setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
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deleteBlock(key: string): void;
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selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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clearFeatureSelection(): void;
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setFeatureIdUnderMouse(feature?: string | undefined): void;
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reload(): void;
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setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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} & {
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reload(): Promise<void>;
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} & {
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afterAttach(): void;
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} & {
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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renderProps(): any;
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} & {
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renderSvg(opts: import("./
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theme: import("@mui/material").ThemeOptions;
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}): Promise<JSX.Element>;
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renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
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afterAttach(): void;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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} & {
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blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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@@ -300,8 +310,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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maxFeatureScreenDensity: {
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type: string;
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@@ -328,6 +336,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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}, {
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rendererTypeName: string;
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message: string | undefined;
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} & {
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readonly RenderingComponent: import("react").FC<{
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model: {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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}, {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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onHorizontalScroll?: Function | undefined;
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blockState?: Record<string, any> | undefined;
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@@ -356,6 +367,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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rendererTypeName: string;
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error: unknown;
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message: string | undefined;
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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@@ -363,6 +375,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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}, {
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error: unknown;
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message: string | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}> | null;
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readonly adapterConfig: any;
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@@ -372,21 +385,49 @@ export default class LinearGenomeViewPlugin extends Plugin {
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readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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regionCannotBeRendered():
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regionCannotBeRendered(): null;
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} & {
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setMessage(arg?: string | undefined): void;
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setError(error?: unknown): void;
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setRpcDriverName(rpcDriverName: string): void;
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reload(): void;
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} & {
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currBpPerPx: number;
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scrollTop: number;
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} & {
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readonly height: number;
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} & {
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setScrollTop(scrollTop: number): void;
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setHeight(displayHeight: number): number;
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resizeHeight(distance: number): number;
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} & {
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featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
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featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
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+
currStatsBpPerPx: number;
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} & {
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readonly currentBytesRequested: number;
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readonly currentFeatureScreenDensity: number;
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readonly maxFeatureScreenDensity: any;
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readonly featureDensityStatsReady: boolean;
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readonly maxAllowableBytes: number;
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} & {
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afterAttach(): void;
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} & {
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setCurrStatsBpPerPx(n: number): void;
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+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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+
setFeatureDensityStatsP(arg: any): void;
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setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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clearFeatureDensityStats(): void;
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} & {
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readonly regionTooLarge: boolean;
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readonly regionTooLargeReason: string;
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} & {
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regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
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} & {
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featureIdUnderMouse: string | undefined;
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contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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} & {
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readonly height: number;
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readonly blockType: "dynamicBlocks" | "staticBlocks";
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readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
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} & {
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@@ -400,55 +441,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
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getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
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getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
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searchFeatureByID(id: string): [number, number, number, number] | undefined;
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-
readonly currentBytesRequested: number;
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-
readonly currentFeatureScreenDensity: number;
|
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405
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-
readonly maxFeatureScreenDensity: any;
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406
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-
readonly featureDensityStatsReady: boolean;
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-
readonly maxAllowableBytes: number;
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} & {
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setMessage(message: string): void;
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} & {
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afterAttach(): void;
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getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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-
setFeatureDensityStatsP(arg: any): void;
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setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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clearFeatureDensityStats(): void;
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setHeight(displayHeight: number): number;
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-
resizeHeight(distance: number): number;
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-
setScrollTop(scrollTop: number): void;
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setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
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setCurrBpPerPx(n: number): void;
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deleteBlock(key: string): void;
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selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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clearFeatureSelection(): void;
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setFeatureIdUnderMouse(feature?: string | undefined): void;
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reload(): void;
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setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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-
} & {
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readonly regionTooLarge: boolean;
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|
-
readonly regionTooLargeReason: string;
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|
} & {
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|
reload(): Promise<void>;
|
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|
} & {
|
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434
|
-
afterAttach(): void;
|
|
435
|
-
} & {
|
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436
|
-
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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437
|
-
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
|
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trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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renderProps(): any;
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} & {
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|
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renderSvg(opts: import("./
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-
|
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theme: import("@mui/material").ThemeOptions;
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445
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-
}): Promise<JSX.Element>;
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+
renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
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|
+
afterAttach(): void;
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}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
|
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
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|
+
} & {
|
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467
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
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468
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
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|
+
} & {
|
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|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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|
key: import("mobx-state-tree").ISimpleType<string>;
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region: import("mobx-state-tree").IModelType<{
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@@ -495,8 +513,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
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reload(): void;
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
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498
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
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|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
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configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
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maxFeatureScreenDensity: {
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type: string;
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@@ -530,13 +546,17 @@ export default class LinearGenomeViewPlugin extends Plugin {
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userByteSizeLimit: number | undefined;
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}>>;
|
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|
children?: import("react").ReactNode;
|
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533
|
-
}) => JSX.Element;
|
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|
+
}) => import("react").JSX.Element;
|
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|
BaseLinearDisplay: import("mobx-state-tree").IModelType<{
|
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
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type: import("mobx-state-tree").ISimpleType<string>;
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rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
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554
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} & {
|
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539
555
|
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
556
|
+
} & {
|
|
557
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
558
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
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559
|
+
} & {
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|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
541
561
|
key: import("mobx-state-tree").ISimpleType<string>;
|
|
542
562
|
region: import("mobx-state-tree").IModelType<{
|
|
@@ -583,8 +603,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
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583
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|
reload(): void;
|
|
584
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|
beforeDestroy(): void;
|
|
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|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
586
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
587
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
588
606
|
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
589
607
|
maxFeatureScreenDensity: {
|
|
590
608
|
type: string;
|
|
@@ -611,6 +629,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
611
629
|
}, {
|
|
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630
|
rendererTypeName: string;
|
|
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631
|
error: unknown;
|
|
632
|
+
message: string | undefined;
|
|
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633
|
} & {
|
|
615
634
|
readonly RenderingComponent: import("react").FC<{
|
|
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635
|
model: {
|
|
@@ -620,6 +639,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
620
639
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
621
640
|
rendererTypeName: string;
|
|
622
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|
error: unknown;
|
|
642
|
+
message: string | undefined;
|
|
623
643
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
624
644
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
625
645
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -627,6 +647,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
627
647
|
}, {
|
|
628
648
|
rendererTypeName: string;
|
|
629
649
|
error: unknown;
|
|
650
|
+
message: string | undefined;
|
|
630
651
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
631
652
|
onHorizontalScroll?: Function | undefined;
|
|
632
653
|
blockState?: Record<string, any> | undefined;
|
|
@@ -639,6 +660,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
639
660
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
640
661
|
rendererTypeName: string;
|
|
641
662
|
error: unknown;
|
|
663
|
+
message: string | undefined;
|
|
642
664
|
} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
|
|
643
665
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
644
666
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
@@ -646,6 +668,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
646
668
|
}, {
|
|
647
669
|
rendererTypeName: string;
|
|
648
670
|
error: unknown;
|
|
671
|
+
message: string | undefined;
|
|
649
672
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
650
673
|
}> | null;
|
|
651
674
|
readonly adapterConfig: any;
|
|
@@ -655,21 +678,49 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
655
678
|
readonly DisplayMessageComponent: import("react").FC<any> | undefined;
|
|
656
679
|
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
657
680
|
readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
|
|
658
|
-
regionCannotBeRendered():
|
|
681
|
+
regionCannotBeRendered(): null;
|
|
659
682
|
} & {
|
|
683
|
+
setMessage(arg?: string | undefined): void;
|
|
660
684
|
setError(error?: unknown): void;
|
|
661
685
|
setRpcDriverName(rpcDriverName: string): void;
|
|
662
686
|
reload(): void;
|
|
663
687
|
} & {
|
|
664
|
-
currBpPerPx: number;
|
|
665
688
|
scrollTop: number;
|
|
666
|
-
|
|
667
|
-
|
|
668
|
-
|
|
689
|
+
} & {
|
|
690
|
+
readonly height: number;
|
|
691
|
+
} & {
|
|
692
|
+
setScrollTop(scrollTop: number): void;
|
|
693
|
+
setHeight(displayHeight: number): number;
|
|
694
|
+
resizeHeight(distance: number): number;
|
|
695
|
+
} & {
|
|
669
696
|
featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
|
|
670
697
|
featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
|
|
698
|
+
currStatsBpPerPx: number;
|
|
699
|
+
} & {
|
|
700
|
+
readonly currentBytesRequested: number;
|
|
701
|
+
readonly currentFeatureScreenDensity: number;
|
|
702
|
+
readonly maxFeatureScreenDensity: any;
|
|
703
|
+
readonly featureDensityStatsReady: boolean;
|
|
704
|
+
readonly maxAllowableBytes: number;
|
|
705
|
+
} & {
|
|
706
|
+
afterAttach(): void;
|
|
707
|
+
} & {
|
|
708
|
+
setCurrStatsBpPerPx(n: number): void;
|
|
709
|
+
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
710
|
+
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
711
|
+
setFeatureDensityStatsP(arg: any): void;
|
|
712
|
+
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
713
|
+
clearFeatureDensityStats(): void;
|
|
714
|
+
} & {
|
|
715
|
+
readonly regionTooLarge: boolean;
|
|
716
|
+
readonly regionTooLargeReason: string;
|
|
717
|
+
} & {
|
|
718
|
+
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
719
|
+
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
|
|
720
|
+
} & {
|
|
721
|
+
featureIdUnderMouse: string | undefined;
|
|
722
|
+
contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
|
|
671
723
|
} & {
|
|
672
|
-
readonly height: number;
|
|
673
724
|
readonly blockType: "dynamicBlocks" | "staticBlocks";
|
|
674
725
|
readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
675
726
|
} & {
|
|
@@ -683,55 +734,32 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
683
734
|
getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
|
|
684
735
|
getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
|
|
685
736
|
searchFeatureByID(id: string): [number, number, number, number] | undefined;
|
|
686
|
-
readonly currentBytesRequested: number;
|
|
687
|
-
readonly currentFeatureScreenDensity: number;
|
|
688
|
-
readonly maxFeatureScreenDensity: any;
|
|
689
|
-
readonly featureDensityStatsReady: boolean;
|
|
690
|
-
readonly maxAllowableBytes: number;
|
|
691
737
|
} & {
|
|
692
|
-
setMessage(message: string): void;
|
|
693
|
-
} & {
|
|
694
|
-
afterAttach(): void;
|
|
695
|
-
getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
|
|
696
|
-
setFeatureDensityStatsP(arg: any): void;
|
|
697
|
-
setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
698
|
-
clearFeatureDensityStats(): void;
|
|
699
|
-
setHeight(displayHeight: number): number;
|
|
700
|
-
resizeHeight(distance: number): number;
|
|
701
|
-
setScrollTop(scrollTop: number): void;
|
|
702
|
-
setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
|
|
703
738
|
addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
|
|
704
|
-
setCurrBpPerPx(n: number): void;
|
|
705
739
|
deleteBlock(key: string): void;
|
|
706
740
|
selectFeature(feature: import("@jbrowse/core/util").Feature): void;
|
|
707
741
|
clearFeatureSelection(): void;
|
|
708
742
|
setFeatureIdUnderMouse(feature?: string | undefined): void;
|
|
709
|
-
reload(): void;
|
|
710
743
|
setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
|
|
711
|
-
} & {
|
|
712
|
-
readonly regionTooLarge: boolean;
|
|
713
|
-
readonly regionTooLargeReason: string;
|
|
714
744
|
} & {
|
|
715
745
|
reload(): Promise<void>;
|
|
716
746
|
} & {
|
|
717
|
-
afterAttach(): void;
|
|
718
|
-
} & {
|
|
719
|
-
regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
|
|
720
|
-
regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): JSX.Element | null;
|
|
721
747
|
trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
722
748
|
contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
723
749
|
renderProps(): any;
|
|
724
750
|
} & {
|
|
725
|
-
renderSvg(opts: import("./
|
|
726
|
-
|
|
727
|
-
theme: import("@mui/material").ThemeOptions;
|
|
728
|
-
}): Promise<JSX.Element>;
|
|
751
|
+
renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
|
|
752
|
+
afterAttach(): void;
|
|
729
753
|
}, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
|
|
730
754
|
id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
731
755
|
type: import("mobx-state-tree").ISimpleType<string>;
|
|
732
756
|
rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
|
|
733
757
|
} & {
|
|
734
758
|
heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
759
|
+
} & {
|
|
760
|
+
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
761
|
+
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
762
|
+
} & {
|
|
735
763
|
blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
|
|
736
764
|
key: import("mobx-state-tree").ISimpleType<string>;
|
|
737
765
|
region: import("mobx-state-tree").IModelType<{
|
|
@@ -778,8 +806,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
778
806
|
reload(): void;
|
|
779
807
|
beforeDestroy(): void;
|
|
780
808
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
781
|
-
userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
782
|
-
userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
|
|
783
809
|
configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
|
|
784
810
|
maxFeatureScreenDensity: {
|
|
785
811
|
type: string;
|
|
@@ -888,7 +914,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
888
914
|
afterDisplayedRegionsSetCallbacks: Function[];
|
|
889
915
|
scaleFactor: number;
|
|
890
916
|
trackRefs: {
|
|
891
|
-
[key: string]:
|
|
917
|
+
[key: string]: HTMLDivElement;
|
|
892
918
|
};
|
|
893
919
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
894
920
|
coarseTotalBp: number;
|
|
@@ -947,7 +973,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
947
973
|
moveTrack(movingId: string, targetId: string): void;
|
|
948
974
|
closeView(): void;
|
|
949
975
|
toggleTrack(trackId: string): void;
|
|
950
|
-
setTrackLabels(setting: "
|
|
976
|
+
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
|
|
951
977
|
toggleCenterLine(): void;
|
|
952
978
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
953
979
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
@@ -1076,7 +1102,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
1076
1102
|
afterDisplayedRegionsSetCallbacks: Function[];
|
|
1077
1103
|
scaleFactor: number;
|
|
1078
1104
|
trackRefs: {
|
|
1079
|
-
[key: string]:
|
|
1105
|
+
[key: string]: HTMLDivElement;
|
|
1080
1106
|
};
|
|
1081
1107
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
1082
1108
|
coarseTotalBp: number;
|
|
@@ -1135,7 +1161,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
1135
1161
|
moveTrack(movingId: string, targetId: string): void;
|
|
1136
1162
|
closeView(): void;
|
|
1137
1163
|
toggleTrack(trackId: string): void;
|
|
1138
|
-
setTrackLabels(setting: "
|
|
1164
|
+
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
|
|
1139
1165
|
toggleCenterLine(): void;
|
|
1140
1166
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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@@ -1221,7 +1247,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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reversed: boolean;
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} | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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}) => JSX.Element;
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}) => import("react").JSX.Element;
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ZoomControls: ({ model }: {
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model: {
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id: string;
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@@ -1274,7 +1300,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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afterDisplayedRegionsSetCallbacks: Function[];
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scaleFactor: number;
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trackRefs: {
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[key: string]:
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[key: string]: HTMLDivElement;
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};
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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@@ -1333,7 +1359,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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moveTrack(movingId: string, targetId: string): void;
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closeView(): void;
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toggleTrack(trackId: string): void;
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-
setTrackLabels(setting: "
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+
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
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toggleCenterLine(): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
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@@ -1462,7 +1488,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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afterDisplayedRegionsSetCallbacks: Function[];
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scaleFactor: number;
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trackRefs: {
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|
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[key: string]:
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+
[key: string]: HTMLDivElement;
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};
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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coarseTotalBp: number;
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|
@@ -1521,7 +1547,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
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moveTrack(movingId: string, targetId: string): void;
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closeView(): void;
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|
toggleTrack(trackId: string): void;
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1524
|
-
setTrackLabels(setting: "
|
|
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|
+
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
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|
toggleCenterLine(): void;
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setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
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activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
@@ -1607,7 +1633,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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reversed: boolean;
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} | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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|
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|
-
}) => JSX.Element;
|
|
1636
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+
}) => import("react").JSX.Element;
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|
LinearGenomeView: ({ model }: {
|
|
1612
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|
model: {
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|
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|
id: string;
|
|
@@ -1660,7 +1686,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
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|
afterDisplayedRegionsSetCallbacks: Function[];
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scaleFactor: number;
|
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|
trackRefs: {
|
|
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|
-
[key: string]:
|
|
1689
|
+
[key: string]: HTMLDivElement;
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|
};
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|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
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|
coarseTotalBp: number;
|
|
@@ -1719,7 +1745,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
1719
1745
|
moveTrack(movingId: string, targetId: string): void;
|
|
1720
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|
closeView(): void;
|
|
1721
1747
|
toggleTrack(trackId: string): void;
|
|
1722
|
-
setTrackLabels(setting: "
|
|
1748
|
+
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
|
|
1723
1749
|
toggleCenterLine(): void;
|
|
1724
1750
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1725
1751
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
@@ -1848,7 +1874,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
1848
1874
|
afterDisplayedRegionsSetCallbacks: Function[];
|
|
1849
1875
|
scaleFactor: number;
|
|
1850
1876
|
trackRefs: {
|
|
1851
|
-
[key: string]:
|
|
1877
|
+
[key: string]: HTMLDivElement;
|
|
1852
1878
|
};
|
|
1853
1879
|
coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
|
|
1854
1880
|
coarseTotalBp: number;
|
|
@@ -1907,7 +1933,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
1907
1933
|
moveTrack(movingId: string, targetId: string): void;
|
|
1908
1934
|
closeView(): void;
|
|
1909
1935
|
toggleTrack(trackId: string): void;
|
|
1910
|
-
setTrackLabels(setting: "
|
|
1936
|
+
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
|
|
1911
1937
|
toggleCenterLine(): void;
|
|
1912
1938
|
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
1913
1939
|
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
@@ -1993,14 +2019,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
|
|
|
1993
2019
|
reversed: boolean;
|
|
1994
2020
|
} | undefined;
|
|
1995
2021
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
1996
|
-
}) => JSX.Element;
|
|
2022
|
+
}) => import("react").JSX.Element;
|
|
1997
2023
|
};
|
|
1998
2024
|
install(pluginManager: PluginManager): void;
|
|
1999
2025
|
configure(pluginManager: PluginManager): void;
|
|
2000
2026
|
}
|
|
2001
|
-
export type { BaseLinearDisplayModel, BlockModel } from './BaseLinearDisplay';
|
|
2027
|
+
export type { ExportSvgDisplayOptions, BaseLinearDisplayModel, BlockModel, } from './BaseLinearDisplay';
|
|
2002
2028
|
export { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
|
|
2003
|
-
export {
|
|
2004
|
-
export { type LinearGenomeViewModel,
|
|
2029
|
+
export { baseLinearDisplayConfigSchema, BaseLinearDisplay, BlockMsg, BaseLinearDisplayComponent, TrackHeightMixin, FeatureDensityMixin, TooLargeMessage, } from './BaseLinearDisplay';
|
|
2030
|
+
export { type LinearGenomeViewModel, type LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
|
|
2005
2031
|
export { renderToSvg, SVGTracks, totalHeight, SVGRuler, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
|
|
2006
2032
|
export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';
|