npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.5.0 → 2.6.1 - Mend

@jbrowse/plugin-linear-genome-view 2.5.0 → 2.6.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (279) hide show

package/dist/LinearGenomeView/model.js CHANGED Viewed

@@ -31,7 +31,6 @@ const react_1 = require("react");
 const configuration_1 = require("@jbrowse/core/configuration");
 const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
 const mst_1 = require("@jbrowse/core/util/types/mst");
-const ui_1 = require("@jbrowse/core/ui");
 const util_1 = require("@jbrowse/core/util");
 const calculateDynamicBlocks_1 = __importDefault(require("@jbrowse/core/util/calculateDynamicBlocks"));
 const calculateStaticBlocks_1 = __importDefault(require("@jbrowse/core/util/calculateStaticBlocks"));
@@ -51,14 +50,13 @@ const FolderOpen_1 = __importDefault(require("@mui/icons-material/FolderOpen"));
 const PhotoCamera_1 = __importDefault(require("@mui/icons-material/PhotoCamera"));
 const ZoomIn_1 = __importDefault(require("@mui/icons-material/ZoomIn"));
 const MenuOpen_1 = __importDefault(require("@mui/icons-material/MenuOpen"));
-// locals
-const SVGLinearGenomeView_1 = require("./svgcomponents/SVGLinearGenomeView");
-const ExportSvgDialog_1 = __importDefault(require("./components/ExportSvgDialog"));
 const MiniControls_1 = __importDefault(require("./components/MiniControls"));
 const Header_1 = __importDefault(require("./components/Header"));
 const util_2 = require("./util");
 // lazies
+const ReturnToImportFormDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('@jbrowse/core/ui/ReturnToImportFormDialog'))));
 const SequenceSearchDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SequenceSearchDialog'))));
+const ExportSvgDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/ExportSvgDialog'))));
 const GetSequenceDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/GetSequenceDialog'))));
 const SearchResultsDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/SearchResultsDialog'))));
 function calculateVisibleLocStrings(contentBlocks) {
@@ -83,6 +81,7 @@ exports.SPACING = 7;
 exports.WIDGET_HEIGHT = 32;
 /**
  * #stateModel LinearGenomeView
+ * #category view
  */
 function stateModelFactory(pluginManager) {
     return mobx_state_tree_1.types
@@ -169,7 +168,6 @@ function stateModelFactory(pluginManager) {
         // which is basically like an onLoad
         afterDisplayedRegionsSetCallbacks: [],
         scaleFactor: 1,
-        // eslint-disable-next-line @typescript-eslint/no-explicit-any
         trackRefs: {},
         coarseDynamicBlocks: [],
         coarseTotalBp: 0,
@@ -496,7 +494,6 @@ function stateModelFactory(pluginManager) {
             (0, util_1.getSession)(self).queueDialog(handleClose => [
                 SearchResultsDialog,
                 {
-                    // eslint-disable-next-line @typescript-eslint/no-explicit-any
                     model: self,
                     searchResults,
                     searchQuery,
@@ -760,8 +757,8 @@ function stateModelFactory(pluginManager) {
          * creates an svg export and save using FileSaver
          */
         async exportSvg(opts = {}) {
-            // eslint-disable-next-line @typescript-eslint/no-explicit-any
-            const html = await (0, SVGLinearGenomeView_1.renderToSvg)(self, opts);
+            const { renderToSvg } = await Promise.resolve().then(() => __importStar(require('./svgcomponents/SVGLinearGenomeView')));
+            const html = await renderToSvg(self, opts);
             const blob = new Blob([html], { type: 'image/svg+xml' });
             (0, file_saver_1.saveAs)(blob, opts.filename || 'image.svg');
         },
@@ -850,7 +847,7 @@ function stateModelFactory(pluginManager) {
                     label: 'Return to import form',
                     onClick: () => {
                         (0, util_1.getSession)(self).queueDialog(handleClose => [
-                            ui_1.ReturnToImportFormDialog,
+                            ReturnToImportFormDialog,
                             { model: self, handleClose },
                         ]);
                     },
@@ -874,7 +871,7 @@ function stateModelFactory(pluginManager) {
                     icon: PhotoCamera_1.default,
                     onClick: () => {
                         (0, util_1.getSession)(self).queueDialog(handleClose => [
-                            ExportSvgDialog_1.default,
+                            ExportSvgDialog,
                             { model: self, handleClose },
                         ]);
                     },
@@ -985,10 +982,10 @@ function stateModelFactory(pluginManager) {
             /**
              * #getter
              * static blocks are an important concept jbrowse uses to avoid
-             * re-rendering when you scroll to the side. when you horizontally scroll to the
-             * right, old blocks to the left may be removed, and new blocks may be
-             * instantiated on the right. tracks may use the static blocks to render their
-             * data for the region represented by the block
+             * re-rendering when you scroll to the side. when you horizontally
+             * scroll to the right, old blocks to the left may be removed, and new
+             * blocks may be instantiated on the right. tracks may use the static
+             * blocks to render their data for the region represented by the block
              */
             get staticBlocks() {
                 const ret = (0, calculateStaticBlocks_1.default)(self);
@@ -1002,9 +999,9 @@ function stateModelFactory(pluginManager) {
             /**
              * #getter
              * dynamic blocks represent the exact coordinates of the currently
-             * visible genome regions on the screen. they are similar to static blocks, but
-             * static blocks can go offscreen while dynamic blocks represent exactly what
-             * is on screen
+             * visible genome regions on the screen. they are similar to static
+             * blocks, but static blocks can go offscreen while dynamic blocks
+             * represent exactly what is on screen
              */
             get dynamicBlocks() {
                 return (0, calculateDynamicBlocks_1.default)(self);
@@ -1022,8 +1019,8 @@ function stateModelFactory(pluginManager) {
             },
             /**
              * #getter
-             * a single "combo-locstring" representing all the regions visible
-             * on the screen
+             * a single "combo-locstring" representing all the regions visible on
+             * the screen
              */
             get visibleLocStrings() {
                 return calculateVisibleLocStrings(this.dynamicBlocks.contentBlocks);
@@ -1126,8 +1123,8 @@ function stateModelFactory(pluginManager) {
          * Navigate to a location based on its refName and optionally start, end,
          * and assemblyName. Will not try to change displayed regions, use
          * `navToLocations` instead. Only navigates to a location if it is
-         * entirely within a displayedRegion. Navigates to the first matching location
-         * encountered.
+         * entirely within a displayedRegion. Navigates to the first matching
+         * location encountered.
          *
          * Throws an error if navigation was unsuccessful
          *
@@ -1152,8 +1149,11 @@ function stateModelFactory(pluginManager) {
             if (locations.some(l => l.start !== undefined && l.end !== undefined && l.start > l.end)) {
                 throw new Error('found start greater than end');
             }
-            const f1 = locations[0];
-            const f2 = locations[locations.length - 1];
+            const f1 = locations.at(0);
+            const f2 = locations.at(-1);
+            if (!f1 || !f2) {
+                return;
+            }
             const a = self.assemblyNames[0];
             const { assemblyManager } = (0, util_1.getSession)(self);
             const assembly1 = assemblyManager.get(f1.assemblyName || a);
@@ -1268,6 +1268,6 @@ var SearchBox_1 = require("./components/SearchBox");
 Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return __importDefault(SearchBox_1).default; } });
 var ZoomControls_1 = require("./components/ZoomControls");
 Object.defineProperty(exports, "ZoomControls", { enumerable: true, get: function () { return __importDefault(ZoomControls_1).default; } });
-var SVGLinearGenomeView_2 = require("./svgcomponents/SVGLinearGenomeView");
-Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_2.renderToSvg; } });
+var SVGLinearGenomeView_1 = require("./svgcomponents/SVGLinearGenomeView");
+Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_1.renderToSvg; } });
 //# sourceMappingURL=model.js.map

package/dist/LinearGenomeView/model.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts CHANGED Viewed

@@ -1,5 +1,6 @@
+import React from 'react';
 export default function SVGBackground({ width, height, shift, }: {
     width: number;
     height: number;
     shift: number;
-}): JSX.Element;
+}): React.JSX.Element;

package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts CHANGED Viewed

@@ -1,9 +1,8 @@
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
-type LGV = LinearGenomeViewModel;
 export default function SVGHeader({ model, fontSize, cytobandHeight, rulerHeight, }: {
-    model: LGV;
+    model: LinearGenomeViewModel;
     rulerHeight: number;
     fontSize: number;
     cytobandHeight: number;
-}): JSX.Element;
-export {};
+}): React.JSX.Element | null;

package/dist/LinearGenomeView/svgcomponents/SVGHeader.js CHANGED Viewed

@@ -25,15 +25,20 @@ function SVGHeader({ model, fontSize, cytobandHeight, rulerHeight, }) {
         minimumBlockWidth: model.minimumBlockWidth,
     });
     const visibleRegions = model.dynamicBlocks.contentBlocks;
+    if (!visibleRegions.length) {
+        return null;
+    }
     overview.setVolatileWidth(width);
     overview.showAllRegions();
     const block = overview.dynamicBlocks.contentBlocks[0];
-    const first = visibleRegions[0];
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const first = visibleRegions.at(0);
+    // eslint-disable-next-line @typescript-eslint/no-non-null-assertion
+    const last = visibleRegions.at(-1);
     const firstOverviewPx = overview.bpToPx({
         ...first,
         coord: first.reversed ? first.end : first.start,
     }) || 0;
-    const last = visibleRegions[visibleRegions.length - 1];
     const lastOverviewPx = overview.bpToPx({
         ...last,
         coord: last.reversed ? last.start : last.end,

package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"SVGHeader.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/svgcomponents/SVGHeader.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,6CAA+C;AAC/C,yFAA2D;AAC3D,4CAAwC;AAExC,SAAS;AACT,0BAAkE;AAClE,wEAA+C;AAC/C,qEAAwD;AACxD,0DAAiC;AACjC,gEAAuC;~~AAIvC~~,SAAwB,SAAS,CAAC,EAChC,KAAK,EACL,QAAQ,EACR,cAAc,EACd,WAAW,GAMZ;IACC,MAAM,EAAE,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IACvE,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,YAAY,GAAG,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IACrE,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IAExB,MAAM,QAAQ,GAAG,yBAAU,CAAC,MAAM,CAAC;QACjC,gBAAgB,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,gBAAgB,CAAC,CAAC;QAC9D,uBAAuB,EAAE,CAAC;QAC1B,iBAAiB,EAAE,KAAK,CAAC,iBAAiB;KAC3C,CAAC,CAAA;IACF,MAAM,cAAc,GAAG,KAAK,CAAC,aAAa,CAAC,aAAa,CAAA;~~IAExD~~,QAAQ,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAA;IAChC,QAAQ,CAAC,cAAc,EAAE,CAAA;IACzB,MAAM,KAAK,GAAG,QAAQ,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;~~IAErD~~,MAAM,KAAK,GAAG,cAAc,CAAC,CAAC,CAAC,CAAA;~~IAC/B~~,MAAM,eAAe,GACnB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,KAAK;QACR,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK;KAChD,CAAC,IAAI,CAAC,CAAA;IAET,MAAM,~~IAAI,GAAG,~~cAAc,~~CAAC,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IACtD,MAAM,cAAc,~~GAClB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,IAAI;QACP,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG;KAC7C,CAAC,IAAI,CAAC,CAAA;IACT,MAAM,CAAC,GAAG,CAAC,aAAa,GAAG,cAAc,CAAA;IACzC,OAAO,CACL,qCAAG,EAAE,EAAC,QAAQ;QACZ,wCACE,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,QAAQ,EACX,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,IAE/B,YAAY,CACR;QAEN,aAAa,CAAC,CAAC,CAAC,CACf,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG;YACzC,8BAAC,mBAAS,IAAC,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,GAAI;YACnE,wCACE,MAAM,EAAC,KAAK,EACZ,IAAI,EAAC,kBAAkB,EACvB,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,cAAc,GAAG,eAAe,EAAE,GAAG,CAAC,EACtD,MAAM,EAAE,0BAAsB,GAAG,CAAC,EAClC,CAAC,EAAE,eAAe,EAClB,CAAC,EAAE,GAAG,GACN;YACF,qCAAG,SAAS,EAAE,eAAe,0BAAsB,GAAG;gBACpD,8BAAC,0BAAO,IAAC,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,KAAK,GAAI,CAC7D,CACF,CACL,CAAC,CAAC,CAAC,IAAI;QAER,qCAAG,SAAS,EAAE,eAAe,QAAQ,GAAG,CAAC,GAAG;YAC1C,8BAAC,qBAAW,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC/C;QACJ,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG,CAAC,GAAG;YAC7C,8BAAC,kBAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC5C,CACF,CACL,CAAA;AACH,CAAC;~~AA9ED~~,~~4BA8EC~~"}
1	+ {"version":3,"file":"SVGHeader.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/svgcomponents/SVGHeader.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,6CAA+C;AAC/C,yFAA2D;AAC3D,4CAAwC;AAExC,SAAS;AACT,0BAAkE;AAClE,wEAA+C;AAC/C,qEAAwD;AACxD,0DAAiC;AACjC,gEAAuC;AAEvC,SAAwB,SAAS,CAAC,EAChC,KAAK,EACL,QAAQ,EACR,cAAc,EACd,WAAW,GAMZ;IACC,MAAM,EAAE,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IACvE,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,YAAY,GAAG,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IACrE,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IAExB,MAAM,QAAQ,GAAG,yBAAU,CAAC,MAAM,CAAC;QACjC,gBAAgB,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,gBAAgB,CAAC,CAAC;QAC9D,uBAAuB,EAAE,CAAC;QAC1B,iBAAiB,EAAE,KAAK,CAAC,iBAAiB;KAC3C,CAAC,CAAA;IACF,MAAM,cAAc,GAAG,KAAK,CAAC,aAAa,CAAC,aAAa,CAAA;IACxD,IAAI,CAAC,cAAc,CAAC,MAAM,EAAE;QAC1B,OAAO,IAAI,CAAA;KACZ;IAED,QAAQ,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAA;IAChC,QAAQ,CAAC,cAAc,EAAE,CAAA;IACzB,MAAM,KAAK,GAAG,QAAQ,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IACrD,oEAAoE;IACpE,MAAM,KAAK,GAAG,cAAc,CAAC,EAAE,CAAC,CAAC,CAAE,CAAA;IACnC,oEAAoE;IACpE,MAAM,IAAI,GAAG,cAAc,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAA;IACnC,MAAM,eAAe,GACnB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,KAAK;QACR,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK;KAChD,CAAC,IAAI,CAAC,CAAA;IAET,MAAM,cAAc,GAClB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,IAAI;QACP,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG;KAC7C,CAAC,IAAI,CAAC,CAAA;IACT,MAAM,CAAC,GAAG,CAAC,aAAa,GAAG,cAAc,CAAA;IACzC,OAAO,CACL,qCAAG,EAAE,EAAC,QAAQ;QACZ,wCACE,CAAC,EAAE,CAAC,EACJ,CAAC,EAAE,QAAQ,EACX,QAAQ,EAAE,QAAQ,EAClB,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO,IAE/B,YAAY,CACR;QAEN,aAAa,CAAC,CAAC,CAAC,CACf,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG;YACzC,8BAAC,mBAAS,IAAC,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,GAAI;YACnE,wCACE,MAAM,EAAC,KAAK,EACZ,IAAI,EAAC,kBAAkB,EACvB,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,cAAc,GAAG,eAAe,EAAE,GAAG,CAAC,EACtD,MAAM,EAAE,0BAAsB,GAAG,CAAC,EAClC,CAAC,EAAE,eAAe,EAClB,CAAC,EAAE,GAAG,GACN;YACF,qCAAG,SAAS,EAAE,eAAe,0BAAsB,GAAG;gBACpD,8BAAC,0BAAO,IAAC,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,KAAK,GAAI,CAC7D,CACF,CACL,CAAC,CAAC,CAAC,IAAI;QAER,qCAAG,SAAS,EAAE,eAAe,QAAQ,GAAG,CAAC,GAAG;YAC1C,8BAAC,qBAAW,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC/C;QACJ,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG,CAAC,GAAG;YAC7C,8BAAC,kBAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC5C,CACF,CACL,CAAA;AACH,CAAC;AAlFD,4BAkFC"}

package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js CHANGED Viewed

@@ -33,7 +33,7 @@ async function renderToSvg(model, opts) {
     const height = totalHeight(tracks, textHeight, trackLabels) + offset + 100;
     const displayResults = await Promise.all(tracks.map(async (track) => {
         const display = track.displays[0];
-        await (0, mobx_1.when)(() => (display.ready !== undefined ? display.ready : true));
+        await (0, mobx_1.when)(() => !display.renderProps().notReady);
         return { track, result: await display.renderSvg({ ...opts, theme }) };
     }));
     const trackLabelMaxLen = (0, util_1.max)(tracks.map(t => (0, util_1.measureText)((0, tracks_1.getTrackName)(t.configuration, session), fontSize)), 0) + 40;

package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"SVGLinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,6CAAuD;AACvD,+BAA2B;AAC3B,6CAAsE;AACtE,4CAA6C;AAC7C,yCAAqD;AAIrD,oEAA2C;AAC3C,4DAAmC;AACnC,4DAAmC;AAEnC,sDAAwD;AAWxD,SAAgB,WAAW,CACzB,MAAe,EACf,UAAkB,EAClB,WAAmB;IAEnB,OAAO,IAAA,UAAG,EACR,MAAM,CAAC,GAAG,CACR,CAAC,CAAC,EAAE,CACF,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,MAAM;QACpB,CAAC,CAAC,MAAM,EAAE,MAAM,CAAC,CAAC,QAAQ,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,UAAU,CAAC,CAC5D,CACF,CAAA;AACH,CAAC;AAZD,kCAYC;AAED,oBAAoB;AACb,KAAK,UAAU,WAAW,CAAC,KAAU,EAAE,IAAsB;;IAClE,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,KAAK,CAAC,WAAW,CAAC,CAAA;IACnC,MAAM,EACJ,UAAU,GAAG,EAAE,EACf,YAAY,GAAG,EAAE,EACjB,WAAW,GAAG,EAAE,EAChB,QAAQ,GAAG,EAAE,EACb,cAAc,GAAG,GAAG,EACpB,WAAW,GAAG,QAAQ,EACtB,SAAS,GAAG,SAAS,EACrB,OAAO,GAAG,CAAC,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC,8DAAG,QAAQ,CAAI,GAC5C,GAAG,IAAI,CAAA;IACR,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,KAAK,GAAG,MAAA,OAAO,CAAC,SAAS,wDAAK,SAAS,CAAC,CAAA;IAC9C,MAAM,EAAE,KAAK,EAAE,MAAM,EAAE,aAAa,EAAE,GAAG,KAAK,CAAA;IAC9C,MAAM,KAAK,GAAG,EAAE,CAAA;IAChB,MAAM,CAAC,GAAG,CAAC,aAAa,GAAG,cAAc,CAAA;IACzC,MAAM,MAAM,GAAG,YAAY,GAAG,WAAW,GAAG,CAAC,GAAG,EAAE,CAAA;IAClD,MAAM,MAAM,GAAG,WAAW,CAAC,MAAM,EAAE,UAAU,EAAE,WAAW,CAAC,GAAG,MAAM,GAAG,GAAG,CAAA;IAC1E,MAAM,cAAc,GAAG,MAAM,OAAO,CAAC,GAAG,CACtC,MAAM,CAAC,GAAG,CAAC,KAAK,EAAC,KAAK,EAAC,EAAE;QACvB,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;QACjC,MAAM,IAAA,WAAI,EAAC,GAAG,EAAE,CAAC,CAAC,OAAO,CAAC,~~KAAK~~,~~KAAK~~,~~SAAS,~~CAAC,~~CAAC~~,CAAC,~~OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,~~CAAA;~~QACtE~~,OAAO,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,OAAO,CAAC,SAAS,CAAC,EAAE,GAAG,IAAI,EAAE,KAAK,EAAE,CAAC,EAAE,CAAA;IACvE,CAAC,CAAC,CACH,CAAA;IACD,MAAM,gBAAgB,GACpB,IAAA,UAAG,EACD,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CACb,IAAA,kBAAW,EAAC,IAAA,qBAAY,EAAC,CAAC,CAAC,aAAa,EAAE,OAAO,CAAC,EAAE,QAAQ,CAAC,CAC9D,EACD,CAAC,CACF,GAAG,EAAE,CAAA;IACR,MAAM,gBAAgB,GAAG,WAAW,KAAK,MAAM,CAAC,CAAC,CAAC,gBAAgB,CAAC,CAAC,CAAC,CAAC,CAAA;IACtE,MAAM,CAAC,GAAG,KAAK,GAAG,gBAAgB,CAAA;IAElC,wDAAwD;IACxD,OAAO,IAAA,6BAAoB,EACzB,8BAAC,wBAAa,IAAC,KAAK,EAAE,IAAA,uBAAkB,EAAC,KAAK,CAAC;QAC7C,8BAAC,OAAO;YACN,uCACE,KAAK,EAAE,CAAC,EACR,MAAM,EAAE,MAAM,EACd,KAAK,EAAC,4BAA4B,EAClC,UAAU,EAAC,8BAA8B,EACzC,OAAO,EAAE,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,GAAG,KAAK,GAAG,CAAC,EAAE,MAAM,CAAC,CAAC,QAAQ,EAAE;gBAEjD,8BAAC,uBAAa,IAAC,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,KAAK,GAAI;gBACzD,qCAAG,SAAS,EAAE,aAAa,KAAK,KAAK;oBACnC,qCAAG,SAAS,EAAE,aAAa,gBAAgB,GAAG;wBAC5C,8BAAC,mBAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,QAAQ,EAClB,WAAW,EAAE,WAAW,EACxB,cAAc,EAAE,cAAc,GAC9B,CACA;oBACJ,8BAAC,mBAAS,IACR,UAAU,EAAE,UAAU,EACtB,QAAQ,EAAE,QAAQ,EAClB,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE,cAAc,EAC9B,MAAM,EAAE,MAAM,EACd,WAAW,EAAE,WAAW,EACxB,gBAAgB,EAAE,gBAAgB,GAClC,CACA,CACA,CACE,CACI,CACjB,CAAA;AACH,CAAC;AAvED,kCAuEC;AAED,uCAAgD;AAAvC,qHAAA,OAAO,OAAY;AAC5B,yCAAkD;AAAzC,uHAAA,OAAO,OAAa"}
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package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts CHANGED Viewed

@@ -1,7 +1,8 @@
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGRegionSeparators({ model, height, }: {
     height: number;
     model: LGV;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts CHANGED Viewed

@@ -1,7 +1,8 @@
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGRuler({ model, fontSize, }: {
     model: LGV;
     fontSize: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts CHANGED Viewed

@@ -1,7 +1,8 @@
+import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 export default function SVGScalebar({ model, fontSize, }: {
     model: LGV;
     fontSize: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts CHANGED Viewed

@@ -1,7 +1,8 @@
+import React from 'react';
 export default function SVGTrackLabel({ trackLabels, trackName, fontSize, trackLabelOffset, x, }: {
     trackName: string;
     trackLabels: string;
     fontSize: number;
     trackLabelOffset: number;
     x: number;
-}): JSX.Element | null;
+}): React.JSX.Element | null;

package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts CHANGED Viewed

@@ -1,3 +1,4 @@
+import React from 'react';
 import { AnyConfigurationModel } from '@jbrowse/core/configuration';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
@@ -18,5 +19,5 @@ export default function SVGTracks({ displayResults, model, offset, textHeight, f
     fontSize: number;
     trackLabels?: string;
     trackLabelOffset?: number;
-}): JSX.Element;
+}): React.JSX.Element;
 export {};

package/dist/LinearGenomeView/util.d.ts CHANGED Viewed

@@ -23,10 +23,10 @@ export declare function makeTicks(start: number, end: number, bpPerPx: number, e
 export declare function generateLocations(regions: ParsedLocString[] | undefined, assemblyManager: AssemblyManager, assemblyName?: string): Promise<{
     assemblyName: string;
     parentRegion: import("@jbrowse/core/assemblyManager/assembly").BasicRegion;
-    refName: string;
-    start?: number | undefined;
     end?: number | undefined;
     reversed?: boolean | undefined;
+    start?: number | undefined;
+    refName: string;
 }[]>;
 /**
  * Parses locString or space separated set of locStrings into location objects