npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.4.1 → 2.5.0 - Mend

@jbrowse/plugin-linear-genome-view 2.4.1 → 2.5.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (201) hide show

package/dist/LinearGenomeView/components/OverviewScalebar.js.map CHANGED Viewed

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package/dist/LinearGenomeView/components/RefNameAutocomplete.js CHANGED Viewed

@@ -38,13 +38,12 @@ const Help_1 = __importDefault(require("@mui/icons-material/Help"));
 const HelpDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./HelpDialog'))));
 function aggregateResults(results) {
     const m = {};
-    for (let i = 0; i < results.length; i++) {
-        const r = results[i];
-        const d = r.getDisplayString();
-        if (!m[d]) {
-            m[d] = [];
+    for (const result of results) {
+        const displayString = result.getDisplayString();
+        if (!m[displayString]) {
+            m[displayString] = [];
         }
-        m[d].push(r);
+        m[displayString].push(result);
     }
     return m;
 }
@@ -66,33 +65,44 @@ function getDeduplicatedResult(results) {
 // because they do not have a matchedObject. the trix search results already
 // filter so don't need re-filtering
 function filterOptions(options, searchQuery) {
-    return options.filter(option => {
-        const { result } = option;
-        return (result.getLabel().toLowerCase().includes(searchQuery) ||
-            result.matchedObject);
-    });
+    return options.filter(({ result }) => result.getLabel().toLowerCase().includes(searchQuery) ||
+        result.matchedObject);
+}
+function getFiltered(opts, inputValue) {
+    const filtered = filterOptions(opts, inputValue.toLocaleLowerCase());
+    return [
+        ...filtered.slice(0, 100),
+        ...(filtered.length > 100
+            ? [
+                {
+                    group: 'limitOption',
+                    result: new BaseResults_1.default({
+                        label: 'keep typing for more results',
+                    }),
+                },
+            ]
+            : []),
+    ];
 }
 function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResults, onChange, value, showHelp = true, minWidth = 200, maxWidth = 550, TextFieldProps = {}, }) {
     const session = (0, util_1.getSession)(model);
     const { assemblyManager } = session;
     const [open, setOpen] = (0, react_1.useState)(false);
     const [loaded, setLoaded] = (0, react_1.useState)(true);
-    const [isHelpDialogDisplayed, setHelpDialogDisplayed] = (0, react_1.useState)(false);
     const [currentSearch, setCurrentSearch] = (0, react_1.useState)('');
     const [inputValue, setInputValue] = (0, react_1.useState)('');
     const [searchOptions, setSearchOptions] = (0, react_1.useState)();
     const debouncedSearch = (0, util_1.useDebounce)(currentSearch, 300);
     const assembly = assemblyName ? assemblyManager.get(assemblyName) : undefined;
     const { coarseVisibleLocStrings, hasDisplayedRegions } = model;
-    // eslint-disable-next-line react-hooks/exhaustive-deps
-    const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
-    const options = (0, react_1.useMemo)(() => regions.map(option => ({
+    const regions = assembly === null || assembly === void 0 ? void 0 : assembly.regions;
+    const options = (0, react_1.useMemo)(() => (regions === null || regions === void 0 ? void 0 : regions.map(option => ({
         result: new BaseResults_1.RefSequenceResult({
             refName: option.refName,
             label: option.refName,
             matchedAttribute: 'refName',
         }),
-    })), [regions]);
+    }))) || [], [regions]);
     (0, react_1.useEffect)(() => {
         let active = true;
         (async () => {
@@ -119,10 +129,9 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
         };
     }, [assemblyName, fetchResults, debouncedSearch, session, model]);
     const inputBoxVal = coarseVisibleLocStrings || value || '';
-    // heuristic, text width + icon width + 50 accommodates help icon and search
+    // heuristic, text width + 60 accommodates help icon and search
     // icon
-    const w = (0, util_1.measureText)(inputBoxVal, 16) + 50;
-    const width = Math.min(Math.max(w, minWidth), maxWidth);
+    const width = Math.min(Math.max((0, util_1.measureText)(inputBoxVal, 14) + 100, minWidth), maxWidth);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked
     return (react_1.default.createElement(react_1.default.Fragment, null,
@@ -148,41 +157,33 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
                     onSelect === null || onSelect === void 0 ? void 0 : onSelect(selectedOption.result);
                 }
                 setInputValue(inputBoxVal);
-            }, options: !(searchOptions === null || searchOptions === void 0 ? void 0 : searchOptions.length) ? options : searchOptions, getOptionDisabled: option => (option === null || option === void 0 ? void 0 : option.group) === 'limitOption', filterOptions: (options, params) => {
-                const filtered = filterOptions(options, params.inputValue.toLocaleLowerCase());
-                return [
-                    ...filtered.slice(0, 100),
-                    ...(filtered.length > 100
-                        ? [
-                            {
-                                group: 'limitOption',
-                                result: new BaseResults_1.default({
-                                    label: 'keep typing for more results',
-                                }),
-                            },
-                        ]
-                        : []),
-                ];
-            }, renderInput: params => {
-                const { helperText, InputProps = {} } = TextFieldProps;
-                return (react_1.default.createElement(material_1.TextField, { onBlur: () =>
-                    // this is used to restore a refName or the non-user-typed input
-                    // to the box on blurring
-                    setInputValue(inputBoxVal), ...params, ...TextFieldProps, helperText: helperText, InputProps: {
-                        ...params.InputProps,
-                        ...InputProps,
-                        endAdornment: (react_1.default.createElement(react_1.default.Fragment, null,
-                            react_1.default.createElement(material_1.InputAdornment, { position: "end", style: { marginRight: 7 } },
-                                react_1.default.createElement(Search_1.default, { fontSize: "small" }),
-                                showHelp ? (react_1.default.createElement(material_1.IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
-                                    react_1.default.createElement(Help_1.default, { fontSize: "small" }))) : null),
-                            params.InputProps.endAdornment)),
-                    }, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
-            }, getOptionLabel: option => (typeof option === 'string'
-                ? option
-                : option.result.getDisplayString()) || '' }),
+            }, options: !(searchOptions === null || searchOptions === void 0 ? void 0 : searchOptions.length) ? options : searchOptions, getOptionDisabled: option => option.group === 'limitOption', filterOptions: (opts, { inputValue }) => getFiltered(opts, inputValue), renderInput: params => (react_1.default.createElement(AutocompleteTextField, { showHelp: showHelp, params: params, inputBoxVal: inputBoxVal, TextFieldProps: TextFieldProps, setCurrentSearch: setCurrentSearch, setInputValue: setInputValue })), getOptionLabel: opt => typeof opt === 'string' ? opt : opt.result.getDisplayString() })));
+}
+function AutocompleteTextField({ TextFieldProps, inputBoxVal, params, showHelp, setInputValue, setCurrentSearch, }) {
+    const { helperText, InputProps = {} } = TextFieldProps;
+    return (react_1.default.createElement(material_1.TextField, { onBlur: () =>
+        // this is used to restore a refName or the non-user-typed input
+        // to the box on blurring
+        setInputValue(inputBoxVal), ...params, ...TextFieldProps, size: "small", helperText: helperText, InputProps: {
+            ...params.InputProps,
+            ...InputProps,
+            endAdornment: (react_1.default.createElement(EndAdornment, { showHelp: showHelp, endAdornment: params.InputProps.endAdornment })),
+        }, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
+}
+function HelpAdornment() {
+    const [isHelpDialogDisplayed, setHelpDialogDisplayed] = (0, react_1.useState)(false);
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement(material_1.IconButton, { onClick: () => setHelpDialogDisplayed(true), size: "small" },
+            react_1.default.createElement(Help_1.default, { fontSize: "small" })),
         isHelpDialogDisplayed ? (react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement("div", null) },
             react_1.default.createElement(HelpDialog, { handleClose: () => setHelpDialogDisplayed(false) }))) : null));
 }
+function EndAdornment({ showHelp, endAdornment, }) {
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        react_1.default.createElement(material_1.InputAdornment, { position: "end", style: { marginRight: 7 } },
+            react_1.default.createElement(Search_1.default, { fontSize: "small" }),
+            showHelp ? react_1.default.createElement(HelpAdornment, null) : null),
+        endAdornment));
+}
 exports.default = (0, mobx_react_1.observer)(RefNameAutocomplete);
 //# sourceMappingURL=RefNameAutocomplete.js.map

package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/dist/LinearGenomeView/components/RubberbandSpan.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 interface Offset {
     coord: number;
     refName?: string;

package/dist/LinearGenomeView/components/SearchBox.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
 declare function SearchBox({ model, showHelp, }: {
     showHelp?: boolean;

package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts CHANGED Viewed

@@ -1,7 +1,9 @@
-/// <reference types="react" />
 import { LinearGenomeViewModel } from '../..';
-export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }: {
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
+export default function SearchResultsDialog({ model, assemblyName, searchQuery, searchResults, handleClose, }: {
     model: LinearGenomeViewModel;
-    optAssemblyName?: string;
+    assemblyName?: string;
+    searchQuery: string;
+    searchResults?: BaseResult[];
     handleClose: () => void;
 }): JSX.Element;

package/dist/LinearGenomeView/components/SearchResultsDialog.js CHANGED Viewed

@@ -4,94 +4,18 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
-const mobx_state_tree_1 = require("mobx-state-tree");
-const util_1 = require("@jbrowse/core/util");
 const ui_1 = require("@jbrowse/core/ui");
 const material_1 = require("@mui/material");
-function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
-    var _a, _b;
-    const session = (0, util_1.getSession)(model);
-    const { pluginManager } = (0, util_1.getEnv)(session);
-    const { assemblyManager } = session;
-    let assemblyName = optAssemblyName;
-    if (model.displayedRegions.length > 0) {
-        assemblyName = (_a = model.displayedRegions[0]) === null || _a === void 0 ? void 0 : _a.assemblyName;
-    }
-    if (!assemblyName) {
-        throw new Error(`Assembly name not found`);
-    }
-    const assembly = assemblyManager.get(assemblyName);
-    if (!assembly) {
-        throw new Error(`assembly ${assemblyName} not found`);
-    }
-    if (!assembly.regions) {
-        throw new Error(`assembly ${assemblyName} regions not loaded`);
-    }
-    const assemblyRegions = assembly.regions;
-    async function handleClick(location) {
-        try {
-            const newRegion = assemblyRegions.find(region => location === region.refName);
-            if (newRegion) {
-                model.setDisplayedRegions([newRegion]);
-                // we use showAllRegions after setDisplayedRegions to make the entire
-                // region visible, xref #1703
-                model.showAllRegions();
-            }
-            else {
-                await model.navToLocString(location, assemblyName);
-            }
-        }
-        catch (e) {
-            console.warn(e);
-            session.notify(`${e}`, 'warning');
-        }
-    }
-    function getTrackName(trackId) {
-        var _a;
-        if (trackId) {
-            const schema = pluginManager.pluggableConfigSchemaType('track');
-            const configuration = (0, mobx_state_tree_1.resolveIdentifier)(schema, (0, mobx_state_tree_1.getRoot)(model), trackId);
-            return ((_a = configuration === null || configuration === void 0 ? void 0 : configuration.name) === null || _a === void 0 ? void 0 : _a.value) || '';
-        }
-        return '';
-    }
+const SearchResultsTable_1 = __importDefault(require("./SearchResultsTable"));
+function SearchResultsDialog({ model, assemblyName, searchQuery, searchResults, handleClose, }) {
     return (react_1.default.createElement(ui_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Search results" },
-        react_1.default.createElement(material_1.DialogContent, null, !((_b = model.searchResults) === null || _b === void 0 ? void 0 : _b.length) ? (react_1.default.createElement(material_1.Typography, null,
+        react_1.default.createElement(material_1.DialogContent, null, !(searchResults === null || searchResults === void 0 ? void 0 : searchResults.length) ? (react_1.default.createElement(material_1.Typography, null,
             "No results found for ",
-            react_1.default.createElement("b", null, model.searchQuery))) : (react_1.default.createElement(react_1.default.Fragment, null,
+            react_1.default.createElement("b", null, searchQuery))) : (react_1.default.createElement(react_1.default.Fragment, null,
             react_1.default.createElement(material_1.Typography, null,
                 "Showing results for ",
-                react_1.default.createElement("b", null, model.searchQuery)),
-            react_1.default.createElement(material_1.TableContainer, { component: material_1.Paper },
-                react_1.default.createElement(material_1.Table, null,
-                    react_1.default.createElement(material_1.TableHead, null,
-                        react_1.default.createElement(material_1.TableRow, null,
-                            react_1.default.createElement(material_1.TableCell, null, "Name"),
-                            react_1.default.createElement(material_1.TableCell, { align: "right" }, "Location"),
-                            react_1.default.createElement(material_1.TableCell, { align: "right" }, "Track"),
-                            react_1.default.createElement(material_1.TableCell, { align: "right" }))),
-                    react_1.default.createElement(material_1.TableBody, null, model.searchResults.map(result => (react_1.default.createElement(material_1.TableRow, { key: `${result.getId()}` },
-                        react_1.default.createElement(material_1.TableCell, { component: "th", scope: "row" }, result.getLabel()),
-                        react_1.default.createElement(material_1.TableCell, { align: "right" }, result.getLocation()),
-                        react_1.default.createElement(material_1.TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
-                        react_1.default.createElement(material_1.TableCell, { align: "right" },
-                            react_1.default.createElement(material_1.Button, { onClick: async () => {
-                                    try {
-                                        const location = result.getLocation();
-                                        if (location) {
-                                            await handleClick(location);
-                                            const resultTrackId = result.getTrackId();
-                                            if (resultTrackId) {
-                                                model.showTrack(resultTrackId);
-                                            }
-                                        }
-                                    }
-                                    catch (e) {
-                                        console.error(e);
-                                        session.notify(`${e}`, 'error');
-                                    }
-                                    handleClose();
-                                }, color: "primary", variant: "contained" }, "Go"))))))))))),
+                react_1.default.createElement("b", null, searchQuery)),
+            react_1.default.createElement(SearchResultsTable_1.default, { model: model, handleClose: handleClose, assemblyName: assemblyName, searchResults: searchResults })))),
         react_1.default.createElement(material_1.Divider, null),
         react_1.default.createElement(material_1.DialogActions, null,
             react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "primary" }, "Cancel"))));

package/dist/LinearGenomeView/components/SearchResultsDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"SearchResultsDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,yCAAyC;AACzC,4CAMsB;AAItB,8EAAqD;AAErD,SAAwB,mBAAmB,CAAC,EAC1C,KAAK,EACL,YAAY,EACZ,WAAW,EACX,aAAa,EACb,WAAW,GAOZ;IACC,OAAO,CACL,8BAAC,WAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,gBAAgB;QACrE,8BAAC,wBAAa,QACX,CAAC,CAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,CACxB,8BAAC,qBAAU;;YACY,yCAAI,WAAW,CAAK,CAC9B,CACd,CAAC,CAAC,CAAC,CACF;YACE,8BAAC,qBAAU;;gBACW,yCAAI,WAAW,CAAK,CAC7B;YACb,8BAAC,4BAAkB,IACjB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,WAAW,EACxB,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAE,aAAa,GAC5B,CACD,CACJ,CACa;QAChB,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE,KAAK,EAAC,SAAS,aAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC;AA1CD,sCA0CC"}

package/dist/LinearGenomeView/components/SearchResultsTable.d.ts ADDED Viewed

@@ -0,0 +1,8 @@
+import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
+import { LinearGenomeViewModel } from '../..';
+export default function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, model, handleClose, }: {
+    searchResults: BaseResult[];
+    assemblyName?: string;
+    model: LinearGenomeViewModel;
+    handleClose: () => void;
+}): JSX.Element;

package/dist/LinearGenomeView/components/SearchResultsTable.js ADDED Viewed

@@ -0,0 +1,83 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importDefault(require("react"));
+const material_1 = require("@mui/material");
+const mobx_state_tree_1 = require("mobx-state-tree");
+const util_1 = require("@jbrowse/core/util");
+function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, model, handleClose, }) {
+    var _a;
+    const session = (0, util_1.getSession)(model);
+    const { pluginManager } = (0, util_1.getEnv)(session);
+    const { assemblyManager } = session;
+    const assemblyName = optAssemblyName || ((_a = model.displayedRegions[0]) === null || _a === void 0 ? void 0 : _a.assemblyName);
+    const assembly = assemblyManager.get(assemblyName);
+    if (!assembly) {
+        throw new Error(`assembly ${assemblyName} not found`);
+    }
+    if (!assembly.regions) {
+        throw new Error(`assembly ${assemblyName} regions not loaded`);
+    }
+    function getTrackName(trackId) {
+        var _a;
+        if (trackId) {
+            const schema = pluginManager.pluggableConfigSchemaType('track');
+            const configuration = (0, mobx_state_tree_1.resolveIdentifier)(schema, (0, mobx_state_tree_1.getRoot)(model), trackId);
+            return ((_a = configuration === null || configuration === void 0 ? void 0 : configuration.name) === null || _a === void 0 ? void 0 : _a.value) || '';
+        }
+        return '';
+    }
+    async function handleClick(location) {
+        var _a;
+        try {
+            const newRegion = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.regions) === null || _a === void 0 ? void 0 : _a.find(region => location === region.refName);
+            if (newRegion) {
+                model.setDisplayedRegions([newRegion]);
+                // we use showAllRegions after setDisplayedRegions to make the entire
+                // region visible, xref #1703
+                model.showAllRegions();
+            }
+            else {
+                await model.navToLocString(location, assemblyName);
+            }
+        }
+        catch (e) {
+            console.warn(e);
+            session.notify(`${e}`, 'warning');
+        }
+    }
+    return (react_1.default.createElement(material_1.TableContainer, { component: material_1.Paper },
+        react_1.default.createElement(material_1.Table, null,
+            react_1.default.createElement(material_1.TableHead, null,
+                react_1.default.createElement(material_1.TableRow, null,
+                    react_1.default.createElement(material_1.TableCell, null, "Name"),
+                    react_1.default.createElement(material_1.TableCell, { align: "right" }, "Location"),
+                    react_1.default.createElement(material_1.TableCell, { align: "right" }, "Track"),
+                    react_1.default.createElement(material_1.TableCell, { align: "right" }))),
+            react_1.default.createElement(material_1.TableBody, null, searchResults.map(result => (react_1.default.createElement(material_1.TableRow, { key: `${result.getId()}` },
+                react_1.default.createElement(material_1.TableCell, { component: "th", scope: "row" }, result.getLabel()),
+                react_1.default.createElement(material_1.TableCell, { align: "right" }, result.getLocation()),
+                react_1.default.createElement(material_1.TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
+                react_1.default.createElement(material_1.TableCell, { align: "right" },
+                    react_1.default.createElement(material_1.Button, { onClick: async () => {
+                            try {
+                                const location = result.getLocation();
+                                if (location) {
+                                    await handleClick(location);
+                                    const resultTrackId = result.getTrackId();
+                                    if (resultTrackId) {
+                                        model.showTrack(resultTrackId);
+                                    }
+                                }
+                            }
+                            catch (e) {
+                                console.error(e);
+                                session.notify(`${e}`, 'error');
+                            }
+                            handleClose();
+                        }, color: "primary", variant: "contained" }, "Go")))))))));
+}
+exports.default = SearchResultsTable;
+//# sourceMappingURL=SearchResultsTable.js.map

package/dist/LinearGenomeView/components/SearchResultsTable.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"SearchResultsTable.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsTable.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,4CASsB;AAEtB,qDAA4D;AAC5D,6CAAuD;AAKvD,SAAwB,kBAAkB,CAAC,EACzC,aAAa,EACb,YAAY,EAAE,eAAe,EAC7B,KAAK,EACL,WAAW,GAMZ;;IACC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,aAAM,EAAC,OAAO,CAAC,CAAA;IACzC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,MAAM,YAAY,GAChB,eAAe,KAAI,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA,CAAA;IAE5D,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,YAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,qBAAqB,CAAC,CAAA;KAC/D;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,MAAM,MAAM,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC/D,MAAM,aAAa,GAAG,IAAA,mCAAiB,EAAC,MAAM,EAAE,IAAA,yBAAO,EAAC,KAAK,CAAC,EAAE,OAAO,CAAC,CAAA;YACxE,OAAO,CAAA,MAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,IAAI,0CAAE,KAAK,KAAI,EAAE,CAAA;SACxC;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IACD,KAAK,UAAU,WAAW,CAAC,QAAgB;;QACzC,IAAI;YACF,MAAM,SAAS,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,0CAAE,IAAI,CACvC,MAAM,CAAC,EAAE,CAAC,QAAQ,KAAK,MAAM,CAAC,OAAO,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,MAAM,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aACnD;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IACD,OAAO,CACL,8BAAC,yBAAc,IAAC,SAAS,EAAE,gBAAK;QAC9B,8BAAC,gBAAK;YACJ,8BAAC,oBAAS;gBACR,8BAAC,mBAAQ;oBACP,8BAAC,oBAAS,eAAiB;oBAC3B,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;oBAC7C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;oBAC1C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;YACZ,8BAAC,oBAAS,QACP,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAC3B,8BAAC,mBAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE;gBAChC,8BAAC,oBAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;gBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IAAE,MAAM,CAAC,WAAW,EAAE,CAAa;gBAC3D,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;gBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO;oBACtB,8BAAC,iBAAM,IACL,OAAO,EAAE,KAAK,IAAI,EAAE;4BAClB,IAAI;gCACF,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;gCACrC,IAAI,QAAQ,EAAE;oCACZ,MAAM,WAAW,CAAC,QAAQ,CAAC,CAAA;oCAC3B,MAAM,aAAa,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;oCACzC,IAAI,aAAa,EAAE;wCACjB,KAAK,CAAC,SAAS,CAAC,aAAa,CAAC,CAAA;qCAC/B;iCACF;6BACF;4BAAC,OAAO,CAAC,EAAE;gCACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gCAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;6BAChC;4BACD,WAAW,EAAE,CAAA;wBACf,CAAC,EACD,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,SAGZ,CACC,CACH,CACZ,CAAC,CACQ,CACN,CACO,CAClB,CAAA;AACH,CAAC;AAtGD,qCAsGC"}

package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 declare function SequenceDialog({ model, handleClose, }: {
     model: {
         assemblyNames: string[];

package/dist/LinearGenomeView/components/TrackContainer.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;

package/dist/LinearGenomeView/components/TrackContainer.js CHANGED Viewed

@@ -113,11 +113,17 @@ function TrackContainer({ model, track, }) {
             delete model.trackRefs[trackId];
         };
     }, [model.trackRefs, trackId]);
-    return (react_1.default.createElement(material_1.Paper, { className: classes.root, variant: "outlined" },
+    return (react_1.default.createElement(material_1.Paper, { ref: ref, className: classes.root, variant: "outlined", onClick: event => {
+            var _a;
+            if (event.detail === 2 && !track.displays[0].featureIdUnderMouse) {
+                const left = ((_a = ref.current) === null || _a === void 0 ? void 0 : _a.getBoundingClientRect().left) || 0;
+                model.zoomTo(model.bpPerPx / 2, event.clientX - left, true);
+            }
+        } },
         react_1.default.createElement(TrackContainerLabel, { model: track, view: model }),
         react_1.default.createElement(react_error_boundary_1.ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => react_1.default.createElement(ui_1.ErrorMessage, { error: error }) },
             react_1.default.createElement("div", { className: classes.trackRenderingContainer, style: { height: minimized ? 20 : height }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` }, !minimized ? (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
+                react_1.default.createElement("div", { className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
                     react_1.default.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
                 DisplayBlurb ? (react_1.default.createElement("div", { style: {
                         position: 'absolute',

package/dist/LinearGenomeView/components/TrackContainer.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/components/TracksContainer.js CHANGED Viewed

@@ -40,6 +40,7 @@ const Gridlines_1 = __importDefault(require("./Gridlines"));
 const CenterLine_1 = __importDefault(require("./CenterLine"));
 const VerticalGuide_1 = __importDefault(require("./VerticalGuide"));
 const RubberbandSpan_1 = __importDefault(require("./RubberbandSpan"));
+const util_1 = require("@jbrowse/core/util");
 const useStyles = (0, mui_1.makeStyles)()({
     tracksContainer: {
         position: 'relative',
@@ -48,17 +49,13 @@ const useStyles = (0, mui_1.makeStyles)()({
 });
 exports.default = (0, mobx_react_1.observer)(function TracksContainer({ children, model, }) {
     const { classes } = useStyles();
+    const { pluginManager } = (0, util_1.getEnv)(model);
     const { mouseDown: mouseDown1, mouseUp } = (0, hooks_1.useSideScroll)(model);
     const ref = (0, react_1.useRef)(null);
     const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, handleMenuItemClick, open, handleClose, mouseMove, mouseDown: mouseDown2, } = (0, hooks_1.useRangeSelect)(ref, model, true);
     (0, hooks_1.useWheelScroll)(ref, model);
-    return (react_1.default.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onClick: event => {
-            var _a;
-            if (event.detail === 2) {
-                const left = ((_a = ref.current) === null || _a === void 0 ? void 0 : _a.getBoundingClientRect().left) || 0;
-                model.zoomTo(model.bpPerPx / 2, event.clientX - left, true);
-            }
-        }, onMouseDown: event => {
+    const additionals = pluginManager.evaluateExtensionPoint('LinearGenomeView-TracksContainerComponent', undefined, { model });
+    return (react_1.default.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: event => {
             mouseDown1(event);
             mouseDown2(event);
         }, onMouseMove: mouseMove, onMouseUp: mouseUp },
@@ -70,6 +67,7 @@ exports.default = (0, mobx_react_1.observer)(function TracksContainer({ children
                 top: anchorPosition.clientY,
             }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null,
         react_1.default.createElement(Rubberband_1.default, { model: model, ControlComponent: react_1.default.createElement(Scalebar_1.default, { model: model, style: { height: __1.SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
+        additionals,
         children));
 });
 //# sourceMappingURL=TracksContainer.js.map

package/dist/LinearGenomeView/components/TracksContainer.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/components/VerticalGuide.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
 declare function VerticalGuide({ model, coordX }: {

package/dist/LinearGenomeView/components/ZoomControls.d.ts CHANGED Viewed

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
 declare function ZoomControls({ model }: {
     model: LinearGenomeViewModel;