@jbrowse/plugin-linear-genome-view 2.4.1 → 2.5.0

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js

@@ -1,10 +1,10 @@
 /* eslint-disable @typescript-eslint/no-explicit-any */
 import React from 'react';
 import { BaseDisplay } from '@jbrowse/core/pluggableElementTypes/models';
-import { getConf } from '@jbrowse/core/configuration';
+import { ConfigurationReference, getConf } from '@jbrowse/core/configuration';
 import { isAbortException, getContainingView, getContainingTrack, getSession, getViewParams, isSelectionContainer, isSessionModelWithWidgets, isFeature, ReactRendering, } from '@jbrowse/core/util';
 import CompositeMap from '@jbrowse/core/util/compositeMap';
-import { getParentRenderProps, getRpcSessionId, } from '@jbrowse/core/util/tracks';
+import { getParentRenderProps } from '@jbrowse/core/util/tracks';
 import { autorun } from 'mobx';
 import { addDisposer, isAlive, types } from 'mobx-state-tree';
 // icons
@@ -12,24 +12,8 @@ import MenuOpenIcon from '@mui/icons-material/MenuOpen';
 import { Tooltip } from '../components/BaseLinearDisplay';
 import TooLargeMessage from '../components/TooLargeMessage';
 import BlockState, { renderBlockData } from './serverSideRenderedBlock';
-// stabilize clipid under test for snapshot
-function getId(id, index) {
-    const isJest = typeof jest === 'undefined';
-    return `clip-${isJest ? id : 'jest'}-${index}`;
-}
-function getDisplayStr(totalBytes) {
-    let displayBp;
-    if (Math.floor(totalBytes / 1000000) > 0) {
-        displayBp = `${Number.parseFloat((totalBytes / 1000000).toPrecision(3))} Mb`;
-    }
-    else if (Math.floor(totalBytes / 1000) > 0) {
-        displayBp = `${Number.parseFloat((totalBytes / 1000).toPrecision(3))} Kb`;
-    }
-    else {
-        displayBp = `${Math.floor(totalBytes)} bytes`;
-    }
-    return displayBp;
-}
+import { getId, getDisplayStr, getFeatureDensityStatsPre } from './util';
+import configSchema from './configSchema';
 const minDisplayHeight = 20;
 /**
  * #stateModel BaseLinearDisplay
@@ -55,6 +39,10 @@ function stateModelFactory() {
          * #property
          */
         userByteSizeLimit: types.maybe(types.number),
+        /**
+         * #property
+         */
+        configuration: ConfigurationReference(configSchema),
     }))
         .volatile(() => ({
         currBpPerPx: 0,
@@ -62,8 +50,8 @@ function stateModelFactory() {
         message: '',
         featureIdUnderMouse: undefined,
         contextMenuFeature: undefined,
-        estimatedRegionStatsP: undefined,
-        estimatedRegionStats: undefined,
+        featureDensityStatsP: undefined,
+        featureDensityStats: undefined,
     }))
         .views(self => ({
         get height() {
@@ -136,7 +124,7 @@ function stateModelFactory() {
         get features() {
             const featureMaps = [];
             for (const block of self.blockState.values()) {
-                if (block && block.features) {
+                if (block === null || block === void 0 ? void 0 : block.features) {
                     featureMaps.push(block.features);
                 }
             }
@@ -182,7 +170,7 @@ function stateModelFactory() {
          */
         get currentBytesRequested() {
             var _a;
-            return ((_a = self.estimatedRegionStats) === null || _a === void 0 ? void 0 : _a.bytes) || 0;
+            return ((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.bytes) || 0;
         },
         /**
          * #getter
@@ -190,7 +178,7 @@ function stateModelFactory() {
         get currentFeatureScreenDensity() {
             var _a;
             const view = getContainingView(self);
-            return (((_a = self.estimatedRegionStats) === null || _a === void 0 ? void 0 : _a.featureDensity) || 0) * view.bpPerPx;
+            return (((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.featureDensity) || 0) * view.bpPerPx;
         },
         /**
          * #getter
@@ -201,8 +189,8 @@ function stateModelFactory() {
         /**
          * #getter
          */
-        get estimatedStatsReady() {
-            return !!self.estimatedRegionStats;
+        get featureDensityStatsReady() {
+            return !!self.featureDensityStats || !!self.userBpPerPxLimit;
         },
         /**
          * #getter
@@ -210,7 +198,7 @@ function stateModelFactory() {
         get maxAllowableBytes() {
             var _a;
             return (self.userByteSizeLimit ||
-                ((_a = self.estimatedRegionStats) === null || _a === void 0 ? void 0 : _a.fetchSizeLimit) ||
+                ((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.fetchSizeLimit) ||
                 getConf(self, 'fetchSizeLimit'));
         },
     }))
@@ -221,11 +209,13 @@ function stateModelFactory() {
         setMessage(message) {
             self.message = message;
         },
+    }))
+        .actions(self => ({
         afterAttach() {
             // watch the parent's blocks to update our block state when they change,
             // then we recreate the blocks on our own model (creating and deleting to
             // match the parent blocks)
-            const blockWatchDisposer = autorun(() => {
+            addDisposer(self, autorun(() => {
                 const blocksPresent = {};
                 const view = getContainingView(self);
                 if (view.initialized) {
@@ -241,61 +231,38 @@ function stateModelFactory() {
                         }
                     });
                 }
-            });
-            addDisposer(self, blockWatchDisposer);
+            }));
         },
         /**
          * #action
          */
-        estimateRegionsStats(regions, opts) {
-            if (self.estimatedRegionStatsP) {
-                return self.estimatedRegionStatsP;
-            }
-            const { rpcManager } = getSession(self);
-            const { adapterConfig } = self;
-            if (!adapterConfig) {
-                // A track extending the base track might not have an adapter config
-                // e.g. Apollo tracks don't use adapters
-                return Promise.resolve({});
+        async getFeatureDensityStats() {
+            if (!self.featureDensityStatsP) {
+                self.featureDensityStatsP = getFeatureDensityStatsPre(self).catch(e => {
+                    this.setFeatureDensityStatsP(undefined);
+                    throw e;
+                });
             }
-            const sessionId = getRpcSessionId(self);
-            const params = {
-                sessionId,
-                regions,
-                adapterConfig,
-                statusCallback: (message) => {
-                    if (isAlive(self)) {
-                        this.setMessage(message);
-                    }
-                },
-                ...opts,
-            };
-            self.estimatedRegionStatsP = rpcManager
-                .call(sessionId, 'CoreEstimateRegionStats', params)
-                .catch(e => {
-                this.setRegionStatsP(undefined);
-                throw e;
-            });
-            return self.estimatedRegionStatsP;
+            return self.featureDensityStatsP;
         },
         /**
          * #action
          */
-        setRegionStatsP(p) {
-            self.estimatedRegionStatsP = p;
+        setFeatureDensityStatsP(arg) {
+            self.featureDensityStatsP = arg;
         },
         /**
          * #action
          */
-        setRegionStats(estimatedRegionStats) {
-            self.estimatedRegionStats = estimatedRegionStats;
+        setFeatureDensityStats(featureDensityStats) {
+            self.featureDensityStats = featureDensityStats;
         },
         /**
          * #action
          */
-        clearRegionStats() {
-            self.estimatedRegionStatsP = undefined;
-            self.estimatedRegionStats = undefined;
+        clearFeatureDensityStats() {
+            self.featureDensityStatsP = undefined;
+            self.featureDensityStats = undefined;
         },
         /**
          * #action
@@ -322,9 +289,9 @@ function stateModelFactory() {
         /**
          * #action
          */
-        updateStatsLimit(stats) {
+        setFeatureDensityStatsLimit(stats) {
             const view = getContainingView(self);
-            if (stats.bytes) {
+            if (stats === null || stats === void 0 ? void 0 : stats.bytes) {
                 self.userByteSizeLimit = stats.bytes;
             }
             else {
@@ -373,8 +340,7 @@ function stateModelFactory() {
          * #action
          */
         clearFeatureSelection() {
-            const session = getSession(self);
-            session.clearSelection();
+            getSession(self).clearSelection();
         },
         /**
          * #action
@@ -402,18 +368,19 @@ function stateModelFactory() {
          * region is too large if:
          * - stats are ready
          * - region is greater than 20kb (don't warn when zoomed in less than that)
-         * - and bytes is greater than max allowed bytes or density greater than max density
+         * - and bytes is greater than max allowed bytes or density greater than max
+         *   density
          */
         get regionTooLarge() {
             const view = getContainingView(self);
-            if (!self.estimatedStatsReady || view.dynamicBlocks.totalBp < 20000) {
+            if (!self.featureDensityStatsReady ||
+                view.dynamicBlocks.totalBp < 20000) {
                 return false;
             }
-            const bpLimitOrDensity = self.userBpPerPxLimit
-                ? view.bpPerPx > self.userBpPerPxLimit
-                : self.currentFeatureScreenDensity > self.maxFeatureScreenDensity;
             return (self.currentBytesRequested > self.maxAllowableBytes ||
-                bpLimitOrDensity);
+                (self.userBpPerPxLimit
+                    ? view.bpPerPx > self.userBpPerPxLimit
+                    : self.currentFeatureScreenDensity > self.maxFeatureScreenDensity));
         },
         /**
          * #getter
@@ -436,7 +403,6 @@ function stateModelFactory() {
              */
             async reload() {
                 self.setError();
-                const aborter = new AbortController();
                 const view = getContainingView(self);
                 // extra check for contentBlocks.length
                 // https://github.com/GMOD/jbrowse-components/issues/2694
@@ -444,68 +410,63 @@ function stateModelFactory() {
                     return;
                 }
                 try {
-                    self.estimatedRegionStatsP = self.estimateRegionsStats(view.staticBlocks.contentBlocks, { signal: aborter.signal });
-                    const estimatedRegionStats = await self.estimatedRegionStatsP;
+                    const featureDensityStats = await self.getFeatureDensityStats();
                     if (isAlive(self)) {
-                        self.setRegionStats(estimatedRegionStats);
+                        self.setFeatureDensityStats(featureDensityStats);
                         superReload();
                     }
-                    else {
-                        return;
-                    }
                 }
                 catch (e) {
                     console.error(e);
                     self.setError(e);
                 }
             },
-            afterAttach() {
-                // this autorun performs stats estimation
-                //
-                // the chain of events calls estimateRegionsStats against the data
-                // adapter which by default uses featureDensity, but can also respond
-                // with a byte size estimate and fetch size limit (data adapter can
-                // define what is too much data)
-                addDisposer(self, autorun(async () => {
-                    var _a;
-                    try {
-                        const aborter = new AbortController();
-                        const view = getContainingView(self);
-                        // extra check for contentBlocks.length
-                        // https://github.com/GMOD/jbrowse-components/issues/2694
-                        if (!view.initialized ||
-                            !view.staticBlocks.contentBlocks.length) {
-                            return;
-                        }
-                        // don't re-estimate featureDensity even if zoom level changes,
-                        // jbrowse1-style assume it's sort of representative
-                        if (((_a = self.estimatedRegionStats) === null || _a === void 0 ? void 0 : _a.featureDensity) !== undefined) {
-                            self.setCurrBpPerPx(view.bpPerPx);
-                            return;
-                        }
-                        // we estimate stats once at a given zoom level
-                        if (view.bpPerPx === self.currBpPerPx) {
-                            return;
-                        }
-                        self.clearRegionStats();
+        };
+    })
+        .actions(self => ({
+        afterAttach() {
+            // this autorun performs stats estimation
+            //
+            // the chain of events calls getFeatureDensityStats against the data
+            // adapter which by default uses featureDensity, but can also respond
+            // with a byte size estimate and fetch size limit (data adapter can
+            // define what is too much data)
+            addDisposer(self, autorun(async () => {
+                var _a;
+                try {
+                    const view = getContainingView(self);
+                    // extra check for contentBlocks.length
+                    // https://github.com/GMOD/jbrowse-components/issues/2694
+                    if (!view.initialized ||
+                        !view.staticBlocks.contentBlocks.length) {
+                        return;
+                    }
+                    // don't re-estimate featureDensity even if zoom level changes,
+                    // jbrowse1-style assume it's sort of representative
+                    if (((_a = self.featureDensityStats) === null || _a === void 0 ? void 0 : _a.featureDensity) !== undefined) {
                         self.setCurrBpPerPx(view.bpPerPx);
-                        const statsP = self.estimateRegionsStats(view.staticBlocks.contentBlocks, { signal: aborter.signal });
-                        self.setRegionStatsP(statsP);
-                        const estimatedRegionStats = await statsP;
-                        if (isAlive(self)) {
-                            self.setRegionStats(estimatedRegionStats);
-                        }
+                        return;
                     }
-                    catch (e) {
-                        if (!isAbortException(e) && isAlive(self)) {
-                            console.error(e);
-                            self.setError(e);
-                        }
+                    // we estimate stats once at a given zoom level
+                    if (view.bpPerPx === self.currBpPerPx) {
+                        return;
                     }
-                }, { delay: 500 }));
-            },
-        };
-    })
+                    self.clearFeatureDensityStats();
+                    self.setCurrBpPerPx(view.bpPerPx);
+                    const featureDensityStats = await self.getFeatureDensityStats();
+                    if (isAlive(self)) {
+                        self.setFeatureDensityStats(featureDensityStats);
+                    }
+                }
+                catch (e) {
+                    if (!isAbortException(e) && isAlive(self)) {
+                        console.error(e);
+                        self.setError(e);
+                    }
+                }
+            }));
+        },
+    }))
         .views(self => ({
         /**
          * #method
@@ -522,8 +483,7 @@ function stateModelFactory() {
          *  react node allows user to force load at current setting
          */
         regionCannotBeRendered(_region) {
-            const { regionTooLarge } = self;
-            return regionTooLarge ? React.createElement(TooLargeMessage, { model: self }) : null;
+            return self.regionTooLarge ? React.createElement(TooLargeMessage, { model: self }) : null;
         },
         /**
          * #method
@@ -535,19 +495,21 @@ function stateModelFactory() {
          * #method
          */
         contextMenuItems() {
-            return self.contextMenuFeature
-                ? [
-                    {
-                        label: 'Open feature details',
-                        icon: MenuOpenIcon,
-                        onClick: () => {
-                            if (self.contextMenuFeature) {
-                                self.selectFeature(self.contextMenuFeature);
-                            }
+            return [
+                ...(self.contextMenuFeature
+                    ? [
+                        {
+                            label: 'Open feature details',
+                            icon: MenuOpenIcon,
+                            onClick: () => {
+                                if (self.contextMenuFeature) {
+                                    self.selectFeature(self.contextMenuFeature);
+                                }
+                            },
                         },
-                    },
-                ]
-                : [];
+                    ]
+                    : []),
+            ];
         },
         /**
          * #method
@@ -556,7 +518,7 @@ function stateModelFactory() {
             const view = getContainingView(self);
             return {
                 ...getParentRenderProps(self),
-                notReady: self.currBpPerPx !== view.bpPerPx || !self.estimatedRegionStats,
+                notReady: self.currBpPerPx !== view.bpPerPx || !self.featureDensityStatsReady,
                 rpcDriverName: self.rpcDriverName,
                 displayModel: self,
                 onFeatureClick(_, featureId) {

package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map

@@ -1 +1 @@
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package/esm/BaseLinearDisplay/models/configSchema.d.ts

@@ -1,2 +1,36 @@
-declare const baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration").AnyConfigurationSchemaType;
+declare const baseLinearDisplayConfigSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
+    /**
+     * #slot
+     */
+    maxFeatureScreenDensity: {
+        type: string;
+        description: string;
+        defaultValue: number;
+    };
+    /**
+     * #slot
+     */
+    fetchSizeLimit: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    height: {
+        type: string;
+        defaultValue: number;
+        description: string;
+    };
+    /**
+     * #slot
+     */
+    mouseover: {
+        type: string;
+        description: string;
+        defaultValue: string;
+        contextVariable: string[];
+    };
+}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
 export default baseLinearDisplayConfigSchema;

package/esm/BaseLinearDisplay/models/configSchema.js

@@ -31,6 +31,15 @@ const baseLinearDisplayConfigSchema = ConfigurationSchema('BaseLinearDisplay', {
         defaultValue: 100,
         description: 'default height for the track',
     },
+    /**
+     * #slot
+     */
+    mouseover: {
+        type: 'string',
+        description: 'text to display when the cursor hovers over a feature',
+        defaultValue: `jexl:get(feature,'name')`,
+        contextVariable: ['feature'],
+    },
 }, {
     /**
      * #identifier

package/esm/BaseLinearDisplay/models/configSchema.js.map

@@ -1 +1 @@
-{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;;;;GAKG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,6BAA6B,GAAG,mBAAmB,CACvD,mBAAmB,EACnB;IACE;;OAEG;IACH,uBAAuB,EAAE;QACvB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,qGAAqG;QACvG,YAAY,EAAE,GAAG;KAClB;IACD;;OAEG;IACH,cAAc,EAAE;QACd,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,OAAS;QACvB,WAAW,EACT,4FAA4F;KAC/F;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,GAAG;QACjB,WAAW,EAAE,8BAA8B;KAC5C;CACF,EACD;IACE;;OAEG;IACH,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AAED,eAAe,6BAA6B,CAAA"}
+{"version":3,"file":"configSchema.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/configSchema.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAA;AAEjE;;;;;GAKG;AACH,SAAS,CAAC,KAAI,CAAC,CAAC,wDAAwD;AAExE,MAAM,6BAA6B,GAAG,mBAAmB,CACvD,mBAAmB,EACnB;IACE;;OAEG;IACH,uBAAuB,EAAE;QACvB,IAAI,EAAE,QAAQ;QACd,WAAW,EACT,qGAAqG;QACvG,YAAY,EAAE,GAAG;KAClB;IACD;;OAEG;IACH,cAAc,EAAE;QACd,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,OAAS;QACvB,WAAW,EACT,4FAA4F;KAC/F;IACD;;OAEG;IACH,MAAM,EAAE;QACN,IAAI,EAAE,QAAQ;QACd,YAAY,EAAE,GAAG;QACjB,WAAW,EAAE,8BAA8B;KAC5C;IACD;;OAEG;IACH,SAAS,EAAE;QACT,IAAI,EAAE,QAAQ;QACd,WAAW,EAAE,uDAAuD;QACpE,YAAY,EAAE,0BAA0B;QAExC,eAAe,EAAE,CAAC,SAAS,CAAC;KAC7B;CACF,EACD;IACE;;OAEG;IACH,kBAAkB,EAAE,WAAW;CAChC,CACF,CAAA;AAED,eAAe,6BAA6B,CAAA"}

package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js

@@ -37,12 +37,16 @@ const blockState = types
         },
         afterAttach() {
             const display = getContainingDisplay(self);
-            makeAbortableReaction(self, renderBlockData, renderBlockEffect, // reaction doesn't expect async here
-            {
-                name: `${display.id}/${assembleLocString(self.region)} rendering`,
-                delay: display.renderDelay,
-                fireImmediately: true,
-            }, this.setLoading, this.setRendered, this.setError);
+            setTimeout(() => {
+                if (isAlive(self)) {
+                    makeAbortableReaction(self, renderBlockData, renderBlockEffect, // reaction doesn't expect async here
+                    {
+                        name: `${display.id}/${assembleLocString(self.region)} rendering`,
+                        delay: display.renderDelay,
+                        fireImmediately: true,
+                    }, this.setLoading, this.setRendered, this.setError);
+                }
+            }, display.renderDelay);
         },
         setStatus(message) {
             self.status = message;

package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map

@@ -1 +1 @@
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+{"version":3,"file":"serverSideRenderedBlock.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/models/serverSideRenderedBlock.ts"],"names":[],"mappings":"AAEA,OAAO,EACL,KAAK,EACL,SAAS,EACT,OAAO,EACP,IAAI,EAEJ,WAAW,GACZ,MAAM,iBAAiB,CAAA;AACxB,OAAO,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAA;AAC5D,OAAO,EACL,iBAAiB,EACjB,UAAU,EACV,oBAAoB,EACpB,iBAAiB,EACjB,aAAa,EACb,qBAAqB,GAEtB,MAAM,oBAAoB,CAAA;AAC3B,OAAO,EAAE,MAAM,EAAE,MAAM,8BAA8B,CAAA;AACrD,OAAO,EAEL,gBAAgB,GACjB,MAAM,0BAA0B,CAAA;AAEjC,OAAO,EACL,qBAAqB,EACrB,eAAe,GAChB,MAAM,2BAA2B,CAAA;AAElC,SAAS;AACT,OAAO,8BAA8B,MAAM,8CAA8C,CAAA;AAEzF,oEAAoE;AACpE,MAAM,UAAU,GAAG,KAAK;KACrB,KAAK,CAAC,YAAY,EAAE;IACnB,GAAG,EAAE,KAAK,CAAC,MAAM;IACjB,MAAM,EAAE,MAAM;IACd,UAAU,EAAE,CAAC;IACb,0BAA0B,EAAE,KAAK;IACjC,2BAA2B,EAAE,KAAK;CACnC,CAAC;IACF,yFAAyF;KACxF,QAAQ,CAAC,GAAG,EAAE,CAAC,CAAC;IACf,gBAAgB,EAAE,SAAwC;IAC1D,MAAM,EAAE,KAAK;IACb,YAAY,EAAE,SAA2C;IACzD,QAAQ,EAAE,SAA6C;IACvD,MAAM,EAAE,SAAgB;IACxB,MAAM,EAAE,EAAE;IACV,KAAK,EAAE,SAAoB;IAC3B,OAAO,EAAE,SAA+B;IACxC,gBAAgB,EAAE,KAAK;IACvB,cAAc,EAAE,8BAA8B;IAC9C,WAAW,EAAE,SAAgB;CAC9B,CAAC,CAAC;KACF,OAAO,CAAC,IAAI,CAAC,EAAE;IACd,IAAI,gBAA6C,CAAA;IACjD,OAAO;QACL,QAAQ;YACN,IAAI,CAAC,UAAU,GAAG,IAAI,CAAC,UAAU,GAAG,CAAC,CAAA;QACvC,CAAC;QACD,WAAW;YACT,MAAM,OAAO,GAAG,oBAAoB,CAAC,IAAI,CAAC,CAAA;YAC1C,UAAU,CAAC,GAAG,EAAE;gBACd,IAAI,OAAO,CAAC,IAAI,CAAC,EAAE;oBACjB,qBAAqB,CACnB,IAAW,EACX,eAAe,EACf,iBAAiB,EAAE,qCAAqC;oBACxD;wBACE,IAAI,EAAE,GAAG,OAAO,CAAC,EAAE,IAAI,iBAAiB,CACtC,IAAI,CAAC,MAAM,CACZ,YAAY;wBACb,KAAK,EAAE,OAAO,CAAC,WAAW;wBAC1B,eAAe,EAAE,IAAI;qBACtB,EACD,IAAI,CAAC,UAAU,EACf,IAAI,CAAC,WAAW,EAChB,IAAI,CAAC,QAAQ,CACd,CAAA;iBACF;YACH,CAAC,EAAE,OAAO,CAAC,WAAW,CAAC,CAAA;QACzB,CAAC;QACD,SAAS,CAAC,OAAe;YACvB,IAAI,CAAC,MAAM,GAAG,OAAO,CAAA;QACvB,CAAC;QACD,UAAU,CAAC,eAAgC;YACzC,IACE,gBAAgB,KAAK,SAAS;gBAC9B,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAChC;gBACA,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,eAAe,CAAA;QACpC,CAAC;QACD,UAAU,CAAC,WAAmB;YAC5B,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,WAAW,CAAA;YAC1B,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,WAAW,CACT,KAQa;YAEb,IAAI,CAAC,KAAK,EAAE;gBACV,OAAM;aACP;YACD,MAAM,EACJ,YAAY,EACZ,QAAQ,EACR,MAAM,EACN,gBAAgB,EAChB,WAAW,GACZ,GAAG,KAAK,CAAA;YACT,IAAI,CAAC,MAAM,GAAG,IAAI,CAAA;YAClB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,YAAY,CAAA;YAChC,IAAI,CAAC,QAAQ,GAAG,QAAQ,CAAA;YACxB,IAAI,CAAC,MAAM,GAAG,MAAM,CAAA;YACpB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,gBAAgB,GAAG,gBAAgB,CAAA;YACxC,IAAI,CAAC,WAAW,GAAG,WAAW,CAAA;YAC9B,gBAAgB,GAAG,SAAS,CAAA;QAC9B,CAAC;QACD,QAAQ,CAAC,KAAc;YACrB,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;YACpB,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,uCAAuC;YACvC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,KAAK,GAAG,KAAK,CAAA;YAClB,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,gBAAgB,GAAG,SAAS,CAAA;YAC5B,IAAI,gBAAgB,CAAC,KAAc,CAAC,EAAE;gBACpC,IAAI,CAAC,MAAM,EAAE,CAAA;aACd;QACH,CAAC;QACD,MAAM;YACJ,IAAI,CAAC,gBAAgB,GAAG,SAAS,CAAA;YACjC,IAAI,CAAC,MAAM,GAAG,KAAK,CAAA;YACnB,IAAI,CAAC,YAAY,GAAG,SAAS,CAAA;YAC7B,IAAI,CAAC,QAAQ,GAAG,SAAS,CAAA;YACzB,IAAI,CAAC,MAAM,GAAG,SAAS,CAAA;YACvB,IAAI,CAAC,KAAK,GAAG,SAAS,CAAA;YACtB,IAAI,CAAC,OAAO,GAAG,SAAS,CAAA;YACxB,IAAI,CAAC,gBAAgB,GAAG,KAAK,CAAA;YAC7B,IAAI,CAAC,cAAc,GAAG,8BAA8B,CAAA;YACpD,IAAI,CAAC,WAAW,GAAG,SAAS,CAAA;YAC5B,SAAS,CAAM,IAAI,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,CAAA;QAClC,CAAC;QACD,aAAa;YACX,IAAI,gBAAgB,IAAI,CAAC,gBAAgB,CAAC,MAAM,CAAC,OAAO,EAAE;gBACxD,gBAAgB,CAAC,KAAK,EAAE,CAAA;aACzB;YACD,MAAM,OAAO,GAAG,oBAAoB,CAAC,IAAI,CAAC,CAAA;YAC1C,MAAM,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,IAAI,CAAC,CAAA;YACvC,MAAM,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;YAChC,MAAM,EAAE,UAAU,EAAE,GAAG,eAAe,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAA;YAClD,iEAAiE;YACjE,IAAI,UAAU,EAAE;gBACd,YAAY;qBACT,qBAAqB,CACpB,UAAU,EACV,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,CAAC,CACvC;qBACA,KAAK,CAAC,CAAC,CAAQ,EAAE,EAAE;oBAClB,kEAAkE;oBAClE,OAAO,CAAC,IAAI,CAAC,8BAA8B,EAAE,CAAC,CAAC,CAAA;gBACjD,CAAC,CAAC,CAAA;aACL;QACH,CAAC;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEJ,eAAe,UAAU,CAAA;AAIzB,2EAA2E;AAC3E,mDAAmD;AACnD,MAAM,UAAU,eAAe,CAC7B,IAAgB,EAChB,UAAiC;IAEjC,IAAI;QACF,MAAM,OAAO,GAAG,UAAU,IAAK,oBAAoB,CAAC,IAAI,CAAS,CAAA;QACjE,MAAM,EAAE,eAAe,EAAE,UAAU,EAAE,GAAG,UAAU,CAAC,OAAO,CAAC,CAA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package/esm/BaseLinearDisplay/models/util.d.ts

@@ -1,3 +1,6 @@
+import { AnyConfigurationModel } from '@jbrowse/core/configuration';
+import { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
+import { IAnyStateTreeNode } from 'mobx-state-tree';
 export interface RenderProps {
     rendererType: any;
     renderArgs: {
@@ -16,3 +19,8 @@ export interface ErrorProps {
     displayError: string;
 }
 export declare function getDisplayStr(totalBytes: number): string;
+export declare function getId(id: string, index: number): string;
+export declare function getFeatureDensityStatsPre(self: IAnyStateTreeNode & {
+    adapterConfig?: AnyConfigurationModel;
+    setMessage: (arg: string) => void;
+}): Promise<FeatureDensityStats>;