@jbrowse/plugin-linear-genome-view 2.3.4 → 2.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (193) hide show
  1. package/dist/BaseLinearDisplay/components/Block.js +1 -1
  2. package/dist/BaseLinearDisplay/components/Block.js.map +1 -1
  3. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +11 -11
  4. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  5. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +74 -4
  6. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +41 -22
  7. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  8. package/dist/BaseLinearDisplay/models/configSchema.js +8 -0
  9. package/dist/BaseLinearDisplay/models/configSchema.js.map +1 -1
  10. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
  11. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +5 -0
  12. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
  13. package/dist/LinearBareDisplay/model.d.ts +62 -4
  14. package/dist/LinearBasicDisplay/model.d.ts +72 -14
  15. package/dist/LinearGenomeView/components/CenterLine.js +2 -2
  16. package/dist/LinearGenomeView/components/CenterLine.js.map +1 -1
  17. package/dist/LinearGenomeView/components/Cytobands.d.ts +118 -0
  18. package/dist/LinearGenomeView/components/Cytobands.js +92 -0
  19. package/dist/LinearGenomeView/components/Cytobands.js.map +1 -0
  20. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
  21. package/dist/LinearGenomeView/components/ExportSvgDialog.js +24 -3
  22. package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
  23. package/dist/LinearGenomeView/components/Gridlines.js +1 -1
  24. package/dist/LinearGenomeView/components/Gridlines.js.map +1 -1
  25. package/dist/LinearGenomeView/components/Header.js +3 -4
  26. package/dist/LinearGenomeView/components/Header.js.map +1 -1
  27. package/dist/LinearGenomeView/components/LinearGenomeView.js +1 -1
  28. package/dist/LinearGenomeView/components/MiniControls.js +5 -4
  29. package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
  30. package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +1 -115
  31. package/dist/LinearGenomeView/components/OverviewScalebar.js +15 -99
  32. package/dist/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
  33. package/dist/LinearGenomeView/components/RubberbandSpan.js +2 -2
  34. package/dist/LinearGenomeView/components/RubberbandSpan.js.map +1 -1
  35. package/dist/LinearGenomeView/components/TrackLabel.js +4 -5
  36. package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
  37. package/dist/LinearGenomeView/components/ZoomControls.js +5 -4
  38. package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -1
  39. package/dist/LinearGenomeView/components/util.d.ts +6 -0
  40. package/dist/LinearGenomeView/components/util.js +11 -1
  41. package/dist/LinearGenomeView/components/util.js.map +1 -1
  42. package/dist/LinearGenomeView/model.d.ts +10 -2
  43. package/dist/LinearGenomeView/model.js +4 -4
  44. package/dist/LinearGenomeView/model.js.map +1 -1
  45. package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +6 -0
  46. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +13 -0
  47. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js.map +1 -0
  48. package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +10 -0
  49. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +55 -0
  50. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -0
  51. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +13 -0
  52. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +56 -0
  53. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -0
  54. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +8 -0
  55. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +13 -0
  56. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +1 -0
  57. package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +8 -0
  58. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +51 -0
  59. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js.map +1 -0
  60. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +8 -0
  61. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +22 -0
  62. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js.map +1 -0
  63. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +8 -0
  64. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +15 -0
  65. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +1 -0
  66. package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +23 -0
  67. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +30 -0
  68. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js.map +1 -0
  69. package/dist/LinearGenomeView/util.js +1 -1
  70. package/dist/LinearGenomeView/util.js.map +1 -1
  71. package/dist/index.d.ts +133 -18
  72. package/dist/index.js +6 -2
  73. package/dist/index.js.map +1 -1
  74. package/esm/BaseLinearDisplay/components/Block.js +1 -1
  75. package/esm/BaseLinearDisplay/components/Block.js.map +1 -1
  76. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +11 -11
  77. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  78. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +74 -4
  79. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +42 -23
  80. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  81. package/esm/BaseLinearDisplay/models/configSchema.js +8 -0
  82. package/esm/BaseLinearDisplay/models/configSchema.js.map +1 -1
  83. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
  84. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +5 -0
  85. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
  86. package/esm/LinearBareDisplay/model.d.ts +62 -4
  87. package/esm/LinearBasicDisplay/model.d.ts +72 -14
  88. package/esm/LinearGenomeView/components/CenterLine.js +2 -2
  89. package/esm/LinearGenomeView/components/CenterLine.js.map +1 -1
  90. package/esm/LinearGenomeView/components/Cytobands.d.ts +118 -0
  91. package/esm/LinearGenomeView/components/Cytobands.js +87 -0
  92. package/esm/LinearGenomeView/components/Cytobands.js.map +1 -0
  93. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +1 -1
  94. package/esm/LinearGenomeView/components/ExportSvgDialog.js +25 -4
  95. package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
  96. package/esm/LinearGenomeView/components/Gridlines.js +1 -1
  97. package/esm/LinearGenomeView/components/Gridlines.js.map +1 -1
  98. package/esm/LinearGenomeView/components/Header.js +5 -6
  99. package/esm/LinearGenomeView/components/Header.js.map +1 -1
  100. package/esm/LinearGenomeView/components/LinearGenomeView.js +1 -1
  101. package/esm/LinearGenomeView/components/MiniControls.js +5 -4
  102. package/esm/LinearGenomeView/components/MiniControls.js.map +1 -1
  103. package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +1 -115
  104. package/esm/LinearGenomeView/components/OverviewScalebar.js +12 -96
  105. package/esm/LinearGenomeView/components/OverviewScalebar.js.map +1 -1
  106. package/esm/LinearGenomeView/components/RubberbandSpan.js +2 -2
  107. package/esm/LinearGenomeView/components/RubberbandSpan.js.map +1 -1
  108. package/esm/LinearGenomeView/components/TrackLabel.js +4 -5
  109. package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
  110. package/esm/LinearGenomeView/components/ZoomControls.js +5 -4
  111. package/esm/LinearGenomeView/components/ZoomControls.js.map +1 -1
  112. package/esm/LinearGenomeView/components/util.d.ts +6 -0
  113. package/esm/LinearGenomeView/components/util.js +9 -0
  114. package/esm/LinearGenomeView/components/util.js.map +1 -1
  115. package/esm/LinearGenomeView/model.d.ts +10 -2
  116. package/esm/LinearGenomeView/model.js +2 -2
  117. package/esm/LinearGenomeView/model.js.map +1 -1
  118. package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +6 -0
  119. package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +7 -0
  120. package/esm/LinearGenomeView/svgcomponents/SVGBackground.js.map +1 -0
  121. package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +10 -0
  122. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +49 -0
  123. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js.map +1 -0
  124. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +13 -0
  125. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +47 -0
  126. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js.map +1 -0
  127. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +8 -0
  128. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +7 -0
  129. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js.map +1 -0
  130. package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +8 -0
  131. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +45 -0
  132. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js.map +1 -0
  133. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +8 -0
  134. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +16 -0
  135. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js.map +1 -0
  136. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +8 -0
  137. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +9 -0
  138. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js.map +1 -0
  139. package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +23 -0
  140. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +24 -0
  141. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js.map +1 -0
  142. package/esm/LinearGenomeView/util.js +1 -1
  143. package/esm/LinearGenomeView/util.js.map +1 -1
  144. package/esm/index.d.ts +133 -18
  145. package/esm/index.js +3 -2
  146. package/esm/index.js.map +1 -1
  147. package/package.json +3 -3
  148. package/src/BaseLinearDisplay/components/Block.tsx +1 -1
  149. package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +11 -12
  150. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +53 -35
  151. package/src/BaseLinearDisplay/models/configSchema.ts +8 -0
  152. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +9 -17
  153. package/src/LinearGenomeView/components/CenterLine.tsx +2 -2
  154. package/src/LinearGenomeView/components/Cytobands.tsx +154 -0
  155. package/src/LinearGenomeView/components/ExportSvgDialog.tsx +56 -4
  156. package/src/LinearGenomeView/components/Gridlines.tsx +1 -1
  157. package/src/LinearGenomeView/components/Header.tsx +6 -13
  158. package/src/LinearGenomeView/components/LinearGenomeView.test.tsx +8 -11
  159. package/src/LinearGenomeView/components/LinearGenomeView.tsx +1 -1
  160. package/src/LinearGenomeView/components/MiniControls.tsx +6 -7
  161. package/src/LinearGenomeView/components/OverviewScalebar.tsx +218 -381
  162. package/src/LinearGenomeView/components/RubberbandSpan.tsx +2 -2
  163. package/src/LinearGenomeView/components/TrackLabel.tsx +2 -5
  164. package/src/LinearGenomeView/components/ZoomControls.tsx +3 -4
  165. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.tsx.snap +1234 -1200
  166. package/src/LinearGenomeView/components/util.ts +13 -0
  167. package/src/LinearGenomeView/index.test.ts +9 -5
  168. package/src/LinearGenomeView/model.ts +10 -3
  169. package/src/LinearGenomeView/svgcomponents/SVGBackground.tsx +21 -0
  170. package/src/LinearGenomeView/svgcomponents/SVGHeader.tsx +93 -0
  171. package/src/LinearGenomeView/svgcomponents/SVGLinearGenomeView.tsx +114 -0
  172. package/src/LinearGenomeView/svgcomponents/SVGRegionSeparators.tsx +31 -0
  173. package/src/LinearGenomeView/svgcomponents/SVGRuler.tsx +125 -0
  174. package/src/LinearGenomeView/svgcomponents/SVGScalebar.tsx +57 -0
  175. package/src/LinearGenomeView/svgcomponents/SVGTrackLabel.tsx +45 -0
  176. package/src/LinearGenomeView/svgcomponents/SVGTracks.tsx +67 -0
  177. package/src/LinearGenomeView/util.test.ts +7 -4
  178. package/src/LinearGenomeView/util.ts +2 -2
  179. package/src/index.ts +10 -1
  180. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +0 -4
  181. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +0 -141
  182. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +0 -1
  183. package/dist/LinearGenomeView/components/Ruler.d.ts +0 -11
  184. package/dist/LinearGenomeView/components/Ruler.js +0 -39
  185. package/dist/LinearGenomeView/components/Ruler.js.map +0 -1
  186. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +0 -4
  187. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +0 -134
  188. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +0 -1
  189. package/esm/LinearGenomeView/components/Ruler.d.ts +0 -11
  190. package/esm/LinearGenomeView/components/Ruler.js +0 -34
  191. package/esm/LinearGenomeView/components/Ruler.js.map +0 -1
  192. package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +0 -307
  193. package/src/LinearGenomeView/components/Ruler.tsx +0 -78
package/dist/index.d.ts CHANGED
@@ -3,7 +3,8 @@ import Plugin from '@jbrowse/core/Plugin';
3
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  import PluginManager from '@jbrowse/core/PluginManager';
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  import { BaseLinearDisplay, BaseLinearDisplayComponent, BlockModel, BlockMsg, baseLinearDisplayConfigSchema } from './BaseLinearDisplay';
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  import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
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- import { renderToSvg, LinearGenomeViewModel, LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
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+ import { LinearGenomeViewModel, LinearGenomeViewStateModel, RefNameAutocomplete, SearchBox } from './LinearGenomeView';
7
+ import { renderToSvg, totalHeight, SVGTracks, SVGRuler } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
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  import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
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  export default class LinearGenomeViewPlugin extends Plugin {
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  name: string;
@@ -13,7 +14,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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  id: string;
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  type: string;
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  rpcDriverName: string | undefined;
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- height: number;
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+ heightPreConfig: number | undefined;
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  blockState: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
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  key: import("mobx-state-tree").ISimpleType<string>;
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  region: import("mobx-state-tree").IModelType<{
@@ -168,6 +169,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
168
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  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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  } & {
172
+ readonly height: any;
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  readonly blockType: "dynamicBlocks" | "staticBlocks";
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  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
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  } & {
@@ -197,7 +199,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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  setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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  setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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  clearRegionStats(): void;
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- setHeight(displayHeight: number): number;
202
+ setHeight(displayHeight: number): any;
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  resizeHeight(distance: number): number;
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  setScrollTop(scrollTop: number): void;
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  updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -230,13 +232,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
230
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  } & {
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  renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
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  overrideHeight: number;
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+ theme: import("@mui/material").ThemeOptions;
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  }): Promise<JSX.Element>;
234
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
235
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  } & {
239
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
242
+ heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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  key: import("mobx-state-tree").ISimpleType<string>;
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  region: import("mobx-state-tree").IModelType<{
@@ -346,6 +349,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
346
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  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
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  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
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  } & {
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+ readonly height: any;
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  readonly blockType: "dynamicBlocks" | "staticBlocks";
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  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
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  } & {
@@ -375,7 +379,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
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  setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
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  setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
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  clearRegionStats(): void;
378
- setHeight(displayHeight: number): number;
382
+ setHeight(displayHeight: number): any;
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  resizeHeight(distance: number): number;
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  setScrollTop(scrollTop: number): void;
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  updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -408,12 +412,67 @@ export default class LinearGenomeViewPlugin extends Plugin {
408
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  } & {
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  renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
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  overrideHeight: number;
415
+ theme: import("@mui/material").ThemeOptions;
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  }): Promise<JSX.Element>;
412
- }, import("mobx-state-tree")._NotCustomized, {
417
+ }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
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+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
419
+ type: import("mobx-state-tree").ISimpleType<string>;
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+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
421
+ } & {
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+ heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
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+ key: import("mobx-state-tree").ISimpleType<string>;
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+ region: import("mobx-state-tree").IModelType<{
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+ refName: import("mobx-state-tree").ISimpleType<string>;
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+ start: import("mobx-state-tree").ISimpleType<number>;
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+ end: import("mobx-state-tree").ISimpleType<number>;
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+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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+ } & {
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+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
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+ }, {
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+ setRefName(newRefName: string): void;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
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+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
438
+ }, {
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+ renderInProgress: AbortController | undefined;
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+ filled: boolean;
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+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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+ layout: any;
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+ status: string;
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+ error: unknown;
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+ message: string | undefined;
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+ maxHeightReached: boolean;
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+ ReactComponent: ({ model, }: {
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+ model: any;
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+ }) => any;
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+ renderProps: any;
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+ } & {
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+ doReload(): void;
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+ afterAttach(): void;
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+ setStatus(message: string): void;
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+ setLoading(abortController: AbortController): void;
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+ setMessage(messageText: string): void;
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+ setRendered(props: {
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+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
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+ features: Map<string, import("@jbrowse/core/util").Feature>;
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+ layout: any;
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+ maxHeightReached: boolean;
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+ renderProps: any;
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+ } | undefined): void;
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+ setError(error: unknown): void;
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+ reload(): void;
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+ beforeDestroy(): void;
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+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
470
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
471
+ }>>, {
413
472
  type: string;
414
- height: number;
415
473
  id: string;
416
474
  rpcDriverName: string | undefined;
475
+ heightPreConfig: number | undefined;
417
476
  userBpPerPxLimit: number | undefined;
418
477
  userByteSizeLimit: number | undefined;
419
478
  }>>;
@@ -424,7 +483,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
424
483
  type: import("mobx-state-tree").ISimpleType<string>;
425
484
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
426
485
  } & {
427
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
486
+ heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
428
487
  blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
429
488
  key: import("mobx-state-tree").ISimpleType<string>;
430
489
  region: import("mobx-state-tree").IModelType<{
@@ -534,6 +593,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
534
593
  estimatedRegionStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined;
535
594
  estimatedRegionStats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined;
536
595
  } & {
596
+ readonly height: any;
537
597
  readonly blockType: "dynamicBlocks" | "staticBlocks";
538
598
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
539
599
  } & {
@@ -563,7 +623,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
563
623
  setRegionStatsP(p?: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").Stats> | undefined): void;
564
624
  setRegionStats(estimatedRegionStats?: import("@jbrowse/core/data_adapters/BaseAdapter").Stats | undefined): void;
565
625
  clearRegionStats(): void;
566
- setHeight(displayHeight: number): number;
626
+ setHeight(displayHeight: number): any;
567
627
  resizeHeight(distance: number): number;
568
628
  setScrollTop(scrollTop: number): void;
569
629
  updateStatsLimit(stats: import("@jbrowse/core/data_adapters/BaseAdapter").Stats): void;
@@ -596,12 +656,67 @@ export default class LinearGenomeViewPlugin extends Plugin {
596
656
  } & {
597
657
  renderSvg(opts: import("./LinearGenomeView").ExportSvgOptions & {
598
658
  overrideHeight: number;
659
+ theme: import("@mui/material").ThemeOptions;
599
660
  }): Promise<JSX.Element>;
600
- }, import("mobx-state-tree")._NotCustomized, {
661
+ }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
662
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
663
+ type: import("mobx-state-tree").ISimpleType<string>;
664
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
665
+ } & {
666
+ heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
667
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
668
+ key: import("mobx-state-tree").ISimpleType<string>;
669
+ region: import("mobx-state-tree").IModelType<{
670
+ refName: import("mobx-state-tree").ISimpleType<string>;
671
+ start: import("mobx-state-tree").ISimpleType<number>;
672
+ end: import("mobx-state-tree").ISimpleType<number>;
673
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
674
+ } & {
675
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
676
+ }, {
677
+ setRefName(newRefName: string): void;
678
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
679
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
680
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
681
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
682
+ }, {
683
+ renderInProgress: AbortController | undefined;
684
+ filled: boolean;
685
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
686
+ features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
687
+ layout: any;
688
+ status: string;
689
+ error: unknown;
690
+ message: string | undefined;
691
+ maxHeightReached: boolean;
692
+ ReactComponent: ({ model, }: {
693
+ model: any;
694
+ }) => any;
695
+ renderProps: any;
696
+ } & {
697
+ doReload(): void;
698
+ afterAttach(): void;
699
+ setStatus(message: string): void;
700
+ setLoading(abortController: AbortController): void;
701
+ setMessage(messageText: string): void;
702
+ setRendered(props: {
703
+ reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
704
+ features: Map<string, import("@jbrowse/core/util").Feature>;
705
+ layout: any;
706
+ maxHeightReached: boolean;
707
+ renderProps: any;
708
+ } | undefined): void;
709
+ setError(error: unknown): void;
710
+ reload(): void;
711
+ beforeDestroy(): void;
712
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
713
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
714
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
715
+ }>>, {
601
716
  type: string;
602
- height: number;
603
717
  id: string;
604
718
  rpcDriverName: string | undefined;
719
+ heightPreConfig: number | undefined;
605
720
  userBpPerPxLimit: number | undefined;
606
721
  userByteSizeLimit: number | undefined;
607
722
  }>;
@@ -723,7 +838,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
723
838
  moveTrack(movingId: string, targetId: string): void;
724
839
  closeView(): void;
725
840
  toggleTrack(trackId: string): void;
726
- setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
841
+ setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
727
842
  toggleCenterLine(): void;
728
843
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
729
844
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -915,7 +1030,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
915
1030
  moveTrack(movingId: string, targetId: string): void;
916
1031
  closeView(): void;
917
1032
  toggleTrack(trackId: string): void;
918
- setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1033
+ setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
919
1034
  toggleCenterLine(): void;
920
1035
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
921
1036
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1117,7 +1232,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1117
1232
  moveTrack(movingId: string, targetId: string): void;
1118
1233
  closeView(): void;
1119
1234
  toggleTrack(trackId: string): void;
1120
- setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1235
+ setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1121
1236
  toggleCenterLine(): void;
1122
1237
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1123
1238
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1309,7 +1424,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1309
1424
  moveTrack(movingId: string, targetId: string): void;
1310
1425
  closeView(): void;
1311
1426
  toggleTrack(trackId: string): void;
1312
- setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1427
+ setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1313
1428
  toggleCenterLine(): void;
1314
1429
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1315
1430
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1511,7 +1626,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1511
1626
  moveTrack(movingId: string, targetId: string): void;
1512
1627
  closeView(): void;
1513
1628
  toggleTrack(trackId: string): void;
1514
- setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1629
+ setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1515
1630
  toggleCenterLine(): void;
1516
1631
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1517
1632
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1703,7 +1818,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
1703
1818
  moveTrack(movingId: string, targetId: string): void;
1704
1819
  closeView(): void;
1705
1820
  toggleTrack(trackId: string): void;
1706
- setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
1821
+ setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
1707
1822
  toggleCenterLine(): void;
1708
1823
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
1709
1824
  activateTrackSelector(): import("@jbrowse/core/util").Widget;
@@ -1793,6 +1908,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
1793
1908
  install(pluginManager: PluginManager): void;
1794
1909
  configure(pluginManager: PluginManager): void;
1795
1910
  }
1796
- export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
1911
+ export { baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, totalHeight, SVGTracks, SVGRuler, BaseLinearDisplayComponent, BaseLinearDisplay, RefNameAutocomplete, SearchBox, BlockMsg, };
1797
1912
  export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
1798
1913
  export type { BaseLinearDisplayModel } from './BaseLinearDisplay';
package/dist/index.js CHANGED
@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
26
26
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
27
  };
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
- exports.BlockMsg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.renderToSvg = exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.linearBareDisplayConfigSchemaFactory = exports.baseLinearDisplayConfigSchema = void 0;
29
+ exports.BlockMsg = exports.SearchBox = exports.RefNameAutocomplete = exports.BaseLinearDisplay = exports.BaseLinearDisplayComponent = exports.SVGRuler = exports.SVGTracks = exports.totalHeight = exports.renderToSvg = exports.linearBasicDisplayModelFactory = exports.linearBasicDisplayConfigSchemaFactory = exports.linearBareDisplayConfigSchemaFactory = exports.baseLinearDisplayConfigSchema = void 0;
30
30
  const Plugin_1 = __importDefault(require("@jbrowse/core/Plugin"));
31
31
  const util_1 = require("@jbrowse/core/util");
32
32
  // icons
@@ -40,9 +40,13 @@ Object.defineProperty(exports, "baseLinearDisplayConfigSchema", { enumerable: tr
40
40
  const LinearBareDisplay_1 = __importStar(require("./LinearBareDisplay"));
41
41
  Object.defineProperty(exports, "linearBareDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBareDisplay_1.configSchemaFactory; } });
42
42
  const LinearGenomeView_1 = __importStar(require("./LinearGenomeView"));
43
- Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return LinearGenomeView_1.renderToSvg; } });
44
43
  Object.defineProperty(exports, "RefNameAutocomplete", { enumerable: true, get: function () { return LinearGenomeView_1.RefNameAutocomplete; } });
45
44
  Object.defineProperty(exports, "SearchBox", { enumerable: true, get: function () { return LinearGenomeView_1.SearchBox; } });
45
+ const SVGLinearGenomeView_1 = require("./LinearGenomeView/svgcomponents/SVGLinearGenomeView");
46
+ Object.defineProperty(exports, "renderToSvg", { enumerable: true, get: function () { return SVGLinearGenomeView_1.renderToSvg; } });
47
+ Object.defineProperty(exports, "totalHeight", { enumerable: true, get: function () { return SVGLinearGenomeView_1.totalHeight; } });
48
+ Object.defineProperty(exports, "SVGTracks", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGTracks; } });
49
+ Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return SVGLinearGenomeView_1.SVGRuler; } });
46
50
  const LinearBasicDisplay_1 = __importStar(require("./LinearBasicDisplay"));
47
51
  Object.defineProperty(exports, "linearBasicDisplayConfigSchemaFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.configSchema; } });
48
52
  Object.defineProperty(exports, "linearBasicDisplayModelFactory", { enumerable: true, get: function () { return LinearBasicDisplay_1.modelFactory; } });
package/dist/index.js.map CHANGED
@@ -1 +1 @@
1
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1
+ {"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,kEAAyC;AAEzC,6CAAgF;AAEhF,QAAQ;AACR,8EAAyD;AAEzD,SAAS;AACT,2DAM4B;AAwE1B,kGA7EA,qCAAiB,OA6EA;AADjB,2GA3EA,8CAA0B,OA2EA;AAI1B,yFA7EA,4BAAQ,OA6EA;AAZR,8GAhEA,iDAA6B,OAgEA;AA9D/B,yEAE4B;AA6D1B,qHA9DuB,uCAAoC,OA8DvB;AA5DtC,uEAO2B;AA8DzB,oGAlEA,sCAAmB,OAkEA;AACnB,0FAlEA,4BAAS,OAkEA;AA7DX,8FAK6D;AAiD3D,4FArDA,iCAAW,OAqDA;AACX,4FArDA,iCAAW,OAqDA;AACX,0FArDA,+BAAS,OAqDA;AACT,yFArDA,8BAAQ,OAqDA;AAnDV,2EAG6B;AA2C3B,sHA7CgB,iCAAqC,OA6ChB;AACrC,+GA7CgB,iCAA8B,OA6ChB;AA1ChC,kEAA0C;AAC1C,8DAAsC;AACtC,sFAA8D;AAE9D,MAAqB,sBAAuB,SAAQ,gBAAM;IAA1D;;QACE,SAAI,GAAG,wBAAwB,CAAA;QAE/B,YAAO,GAAG;YACR,0BAA0B,EAA1B,8CAA0B;YAC1B,iBAAiB,EAAjB,qCAAiB;YACjB,6BAA6B,EAA7B,iDAA6B;YAC7B,SAAS,EAAT,4BAAS;YACT,YAAY,EAAZ,+BAAY;YACZ,gBAAgB,EAAhB,mCAAgB;SACjB,CAAA;IAsBH,CAAC;IApBC,OAAO,CAAC,aAA4B;QAClC,IAAA,sBAAa,EAAC,aAAa,CAAC,CAAA;QAC5B,IAAA,oBAAW,EAAC,aAAa,CAAC,CAAA;QAC1B,IAAA,4BAAmB,EAAC,aAAa,CAAC,CAAA;QAClC,IAAA,0BAAiB,EAAC,aAAa,CAAC,CAAA;QAChC,IAAA,2BAAkB,EAAC,aAAa,CAAC,CAAA;QACjC,IAAA,gCAAuB,EAAC,aAAa,CAAC,CAAA;IACxC,CAAC;IAED,SAAS,CAAC,aAA4B;QACpC,IAAI,IAAA,4BAAqB,EAAC,aAAa,CAAC,SAAS,CAAC,EAAE;YAClD,aAAa,CAAC,SAAS,CAAC,eAAe,CAAC,CAAC,KAAK,CAAC,EAAE;gBAC/C,KAAK,EAAE,oBAAoB;gBAC3B,IAAI,EAAE,mBAAa;gBACnB,OAAO,EAAE,CAAC,OAA6B,EAAE,EAAE;oBACzC,OAAO,CAAC,OAAO,CAAC,kBAAkB,EAAE,EAAE,CAAC,CAAA;gBACzC,CAAC;aACF,CAAC,CAAA;SACH;IACH,CAAC;CACF;AAhCD,yCAgCC"}
@@ -17,7 +17,7 @@ const useStyles = makeStyles()(theme => ({
17
17
  },
18
18
  interRegionPaddingBlock: {
19
19
  minHeight: '100%',
20
- backgroundColor: theme.palette.text.primary,
20
+ backgroundColor: theme.palette.text.disabled,
21
21
  },
22
22
  boundaryPaddingBlock: {
23
23
  minHeight: '100%',
@@ -1 +1 @@
1
- {"version":3,"file":"Block.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/Block.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,YAAY,EAAE;QACZ,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,WAAW,EAAE;QACX,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,eAAe,EAAE,MAAM;QACvB,eAAe,EACb,oHAAoH;KACvH;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,OAAO;KAC5C;IACD,oBAAoB,EAAE;QACpB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;KACzD;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EACtC,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACzB,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,SAAS,EAAE,OAAO,CAAC,YAAY,IAC5D,QAAQ,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,WAAW,CAAC,EAAE,KAAK,EAAqB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,6BAAK,SAAS,EAAE,OAAO,CAAC,WAAW,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,GAAI,CAAA;AAClE,CAAC;AAED,SAAS,uBAAuB,CAAC,EAC/B,QAAQ,EACR,KAAK,EACL,KAAK,GAAG,EAAE,GAKX;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BACE,KAAK,EAAE;YACL,GAAG,KAAK;YACR,KAAK;SACN,EACD,SAAS,EACP,QAAQ;YACN,CAAC,CAAC,OAAO,CAAC,oBAAoB;YAC9B,CAAC,CAAC,OAAO,CAAC,uBAAuB,GAErC,CACH,CAAA;AACH,CAAC;AAED,OAAO,EAAE,YAAY,EAAE,WAAW,EAAE,uBAAuB,EAAE,CAAA"}
1
+ {"version":3,"file":"Block.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/Block.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,YAAY,EAAE;QACZ,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,WAAW,EAAE;QACX,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,YAAY;QACvB,eAAe,EAAE,MAAM;QACvB,eAAe,EACb,oHAAoH;KACvH;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,QAAQ;KAC7C;IACD,oBAAoB,EAAE;QACpB,SAAS,EAAE,MAAM;QACjB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;KACzD;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,YAAY,GAAG,QAAQ,CAAC,UAAU,EACtC,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;IACzB,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,KAAK,EAAE,OAAO,EAAE,EAAE,SAAS,EAAE,OAAO,CAAC,YAAY,IAC5D,QAAQ,CACL,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,SAAS,WAAW,CAAC,EAAE,KAAK,EAAqB;IAC/C,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,6BAAK,SAAS,EAAE,OAAO,CAAC,WAAW,EAAE,KAAK,EAAE,EAAE,KAAK,EAAE,GAAI,CAAA;AAClE,CAAC;AAED,SAAS,uBAAuB,CAAC,EAC/B,QAAQ,EACR,KAAK,EACL,KAAK,GAAG,EAAE,GAKX;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL,6BACE,KAAK,EAAE;YACL,GAAG,KAAK;YACR,KAAK;SACN,EACD,SAAS,EACP,QAAQ;YACN,CAAC,CAAC,OAAO,CAAC,oBAAoB;YAC9B,CAAC,CAAC,OAAO,CAAC,uBAAuB,GAErC,CACH,CAAA;AACH,CAAC;AAED,OAAO,EAAE,YAAY,EAAE,WAAW,EAAE,uBAAuB,EAAE,CAAA"}
@@ -7,17 +7,17 @@ import { LoadingEllipses } from '@jbrowse/core/ui';
7
7
  import RefreshIcon from '@mui/icons-material/Refresh';
8
8
  // locals
9
9
  import BlockMsg from './BlockMsg';
10
- const useStyles = makeStyles()(theme => ({
11
- loading: {
12
- paddingLeft: '0.6em',
13
- backgroundColor: theme.palette.action.disabledBackground,
14
- backgroundImage: 'repeating-linear-gradient(45deg, transparent, transparent 5px, rgba(255,255,255,.5) 5px, rgba(255,255,255,.5) 10px)',
15
- height: '100%',
16
- width: '100%',
17
- pointerEvents: 'none',
18
- textAlign: 'center',
19
- },
20
- }));
10
+ const useStyles = makeStyles()(theme => {
11
+ const bg = theme.palette.action.disabledBackground;
12
+ return {
13
+ loading: {
14
+ paddingLeft: '0.6em',
15
+ backgroundColor: theme.palette.background.default,
16
+ backgroundImage: `repeating-linear-gradient(45deg, transparent, transparent 5px, ${bg} 5px, ${bg} 10px)`,
17
+ textAlign: 'center',
18
+ },
19
+ };
20
+ });
21
21
  // eslint-disable-next-line @typescript-eslint/no-explicit-any
22
22
  const LoadingMessage = observer(({ model }) => {
23
23
  // only show the loading message after 300ms to prevent excessive flickering
@@ -1 +1 @@
1
- {"version":3,"file":"ServerSideRenderedBlockContent.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC3C,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAElD,QAAQ;AACR,OAAO,WAAW,MAAM,6BAA6B,CAAA;AAErD,SAAS;AACT,OAAO,QAAQ,MAAM,YAAY,CAAA;AAEjC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,OAAO,EAAE;QACP,WAAW,EAAE,OAAO;QACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB;QACxD,eAAe,EACb,qHAAqH;QACvH,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;QACb,aAAa,EAAE,MAAM;QACrB,SAAS,EAAE,QAAQ;KACpB;CACF,CAAC,CAAC,CAAA;AAEH,8DAA8D;AAC9D,MAAM,cAAc,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC5D,4EAA4E;IAC5E,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACzC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,KAAK,CAAA;QAClB,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;YAC9B,IAAI,CAAC,MAAM,EAAE;gBACX,QAAQ,CAAC,IAAI,CAAC,CAAA;aACf;QACH,CAAC,EAAE,GAAG,CAAC,CAAA;QACP,OAAO,GAAG,EAAE;YACV,YAAY,CAAC,OAAO,CAAC,CAAA;YACrB,MAAM,GAAG,IAAI,CAAA;QACf,CAAC,CAAA;IACH,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrC,8DAA8D;IAC9D,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,SAAS,CAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC3D,MAAM,MAAM,GAAG,aAAa,IAAI,WAAW,CAAA;IAC3C,OAAO,CACL,0CACG,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC7B,oBAAC,eAAe,IAAC,OAAO,EAAE,MAAM,GAAI,CAChC,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,8BAA8B,GAAG,QAAQ,CAAC,UAAU,EACxD,KAAK,GAIN;IACC,IAAI,KAAK,CAAC,KAAK,EAAE;QACf,OAAO,CACL,oBAAC,QAAQ,IACP,OAAO,EAAE,GAAG,KAAK,CAAC,KAAK,EAAE,EACzB,QAAQ,EAAC,OAAO,EAChB,UAAU,EAAC,QAAQ,EACnB,IAAI,EAAE,oBAAC,WAAW,OAAG,EACrB,MAAM,EAAE,KAAK,CAAC,MAAM,GACpB,CACH,CAAA;KACF;IACD,IAAI,KAAK,CAAC,OAAO,EAAE;QACjB,yFAAyF;QACzF,OAAO,KAAK,CAAC,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAC3C,KAAK,CAAC,OAAO,CACd,CAAC,CAAC,CAAC,CACF,oBAAC,QAAQ,IAAC,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,EAAE,EAAE,QAAQ,EAAC,MAAM,GAAG,CAC1D,CAAA;KACF;IACD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;QACjB,OAAO,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACxC;IACD,OAAO,KAAK,CAAC,YAAY,CAAA;AAC3B,CAAC,CAAC,CAAA;AAEF,eAAe,8BAA8B,CAAA"}
1
+ {"version":3,"file":"ServerSideRenderedBlockContent.js","sourceRoot":"","sources":["../../../src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAClD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,SAAS,EAAE,MAAM,iBAAiB,CAAA;AAC3C,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAElD,QAAQ;AACR,OAAO,WAAW,MAAM,6BAA6B,CAAA;AAErD,SAAS;AACT,OAAO,QAAQ,MAAM,YAAY,CAAA;AAEjC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,GAAG,KAAK,CAAC,OAAO,CAAC,MAAM,CAAC,kBAAkB,CAAA;IAClD,OAAO;QACL,OAAO,EAAE;YACP,WAAW,EAAE,OAAO;YACpB,eAAe,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,OAAO;YACjD,eAAe,EAAE,kEAAkE,EAAE,SAAS,EAAE,QAAQ;YACxG,SAAS,EAAE,QAAQ;SACpB;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,8DAA8D;AAC9D,MAAM,cAAc,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC5D,4EAA4E;IAC5E,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACzC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,KAAK,CAAA;QAClB,MAAM,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;YAC9B,IAAI,CAAC,MAAM,EAAE;gBACX,QAAQ,CAAC,IAAI,CAAC,CAAA;aACf;QACH,CAAC,EAAE,GAAG,CAAC,CAAA;QACP,OAAO,GAAG,EAAE;YACV,YAAY,CAAC,OAAO,CAAC,CAAA;YACrB,MAAM,GAAG,IAAI,CAAA;QACf,CAAC,CAAA;IACH,CAAC,EAAE,EAAE,CAAC,CAAA;IAEN,MAAM,EAAE,MAAM,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IACrC,8DAA8D;IAC9D,MAAM,EAAE,OAAO,EAAE,aAAa,EAAE,GAAG,SAAS,CAAM,KAAK,EAAE,CAAC,CAAC,CAAA;IAC3D,MAAM,MAAM,GAAG,aAAa,IAAI,WAAW,CAAA;IAC3C,OAAO,CACL,0CACG,KAAK,CAAC,CAAC,CAAC,CACP,6BAAK,SAAS,EAAE,OAAO,CAAC,OAAO;QAC7B,oBAAC,eAAe,IAAC,OAAO,EAAE,MAAM,GAAI,CAChC,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,8BAA8B,GAAG,QAAQ,CAAC,UAAU,EACxD,KAAK,GAIN;IACC,IAAI,KAAK,CAAC,KAAK,EAAE;QACf,OAAO,CACL,oBAAC,QAAQ,IACP,OAAO,EAAE,GAAG,KAAK,CAAC,KAAK,EAAE,EACzB,QAAQ,EAAC,OAAO,EAChB,UAAU,EAAC,QAAQ,EACnB,IAAI,EAAE,oBAAC,WAAW,OAAG,EACrB,MAAM,EAAE,KAAK,CAAC,MAAM,GACpB,CACH,CAAA;KACF;IACD,IAAI,KAAK,CAAC,OAAO,EAAE;QACjB,yFAAyF;QACzF,OAAO,KAAK,CAAC,cAAc,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAC3C,KAAK,CAAC,OAAO,CACd,CAAC,CAAC,CAAC,CACF,oBAAC,QAAQ,IAAC,OAAO,EAAE,GAAG,KAAK,CAAC,OAAO,EAAE,EAAE,QAAQ,EAAC,MAAM,GAAG,CAC1D,CAAA;KACF;IACD,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;QACjB,OAAO,oBAAC,cAAc,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACxC;IACD,OAAO,KAAK,CAAC,YAAY,CAAA;AAC3B,CAAC,CAAC,CAAA;AAEF,eAAe,8BAA8B,CAAA"}
@@ -7,6 +7,7 @@ import { Region } from '@jbrowse/core/util/types';
7
7
  import CompositeMap from '@jbrowse/core/util/compositeMap';
8
8
  import { Instance } from 'mobx-state-tree';
9
9
  import { ExportSvgOptions } from '../../LinearGenomeView';
10
+ import { ThemeOptions } from '@mui/material';
10
11
  export interface Layout {
11
12
  minX: number;
12
13
  minY: number;
@@ -23,7 +24,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
23
24
  /**
24
25
  * #property
25
26
  */
26
- height: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
27
+ heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
27
28
  /**
28
29
  * #property
29
30
  * updated via autorun
@@ -145,6 +146,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
145
146
  estimatedRegionStatsP: Promise<Stats> | undefined;
146
147
  estimatedRegionStats: Stats | undefined;
147
148
  } & {
149
+ readonly height: any;
148
150
  /**
149
151
  * #getter
150
152
  */
@@ -248,7 +250,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
248
250
  /**
249
251
  * #action
250
252
  */
251
- setHeight(displayHeight: number): number;
253
+ setHeight(displayHeight: number): any;
252
254
  /**
253
255
  * #action
254
256
  */
@@ -352,12 +354,80 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
352
354
  */
353
355
  renderSvg(opts: ExportSvgOptions & {
354
356
  overrideHeight: number;
357
+ theme: ThemeOptions;
355
358
  }): Promise<JSX.Element>;
356
- }, import("mobx-state-tree")._NotCustomized, {
359
+ }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
360
+ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
361
+ type: import("mobx-state-tree").ISimpleType<string>;
362
+ rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
363
+ } & {
364
+ /**
365
+ * #property
366
+ */
367
+ heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
368
+ /**
369
+ * #property
370
+ * updated via autorun
371
+ */
372
+ blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
373
+ key: import("mobx-state-tree").ISimpleType<string>;
374
+ region: import("mobx-state-tree").IModelType<{
375
+ refName: import("mobx-state-tree").ISimpleType<string>;
376
+ start: import("mobx-state-tree").ISimpleType<number>;
377
+ end: import("mobx-state-tree").ISimpleType<number>;
378
+ reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
379
+ } & {
380
+ assemblyName: import("mobx-state-tree").ISimpleType<string>;
381
+ }, {
382
+ setRefName(newRefName: string): void;
383
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
384
+ reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
385
+ isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
386
+ isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
387
+ }, {
388
+ renderInProgress: AbortController | undefined;
389
+ filled: boolean;
390
+ reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
391
+ features: Map<string, Feature> | undefined;
392
+ layout: any;
393
+ status: string;
394
+ error: unknown;
395
+ message: string | undefined;
396
+ maxHeightReached: boolean;
397
+ ReactComponent: ({ model, }: {
398
+ model: any;
399
+ }) => any;
400
+ renderProps: any;
401
+ } & {
402
+ doReload(): void;
403
+ afterAttach(): void;
404
+ setStatus(message: string): void;
405
+ setLoading(abortController: AbortController): void;
406
+ setMessage(messageText: string): void;
407
+ setRendered(props: {
408
+ reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
409
+ features: Map<string, Feature>;
410
+ layout: any;
411
+ maxHeightReached: boolean;
412
+ renderProps: any;
413
+ } | undefined): void;
414
+ setError(error: unknown): void;
415
+ reload(): void;
416
+ beforeDestroy(): void;
417
+ }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
418
+ /**
419
+ * #property
420
+ */
421
+ userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
422
+ /**
423
+ * #property
424
+ */
425
+ userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
426
+ }>>, {
357
427
  type: string;
358
- height: number;
359
428
  id: string;
360
429
  rpcDriverName: string | undefined;
430
+ heightPreConfig: number | undefined;
361
431
  userBpPerPxLimit: number | undefined;
362
432
  userByteSizeLimit: number | undefined;
363
433
  }>;