@jbrowse/plugin-linear-genome-view 2.3.4 → 2.4.0

package/src/index.ts

@@ -17,7 +17,6 @@ import LinearBareDisplayF, {
   configSchemaFactory as linearBareDisplayConfigSchemaFactory,
 } from './LinearBareDisplay'
 import LinearGenomeViewF, {
-  renderToSvg,
   LinearGenomeViewModel,
   LinearGenomeViewStateModel,
   RefNameAutocomplete,
@@ -25,6 +24,13 @@ import LinearGenomeViewF, {
   ZoomControls,
   LinearGenomeView,
 } from './LinearGenomeView'
+
+import {
+  renderToSvg,
+  totalHeight,
+  SVGTracks,
+  SVGRuler,
+} from './LinearGenomeView/svgcomponents/SVGLinearGenomeView'
 import LinearBasicDisplayF, {
   configSchema as linearBasicDisplayConfigSchemaFactory,
   modelFactory as linearBasicDisplayModelFactory,
@@ -74,6 +80,9 @@ export {
   linearBasicDisplayConfigSchemaFactory,
   linearBasicDisplayModelFactory,
   renderToSvg,
+  totalHeight,
+  SVGTracks,
+  SVGRuler,
   BaseLinearDisplayComponent,
   BaseLinearDisplay,
   RefNameAutocomplete,

package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts

@@ -1,4 +0,0 @@
-import { LinearGenomeViewModel, ExportSvgOptions } from '..';
-type LGV = LinearGenomeViewModel;
-export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
-export {};

package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js

@@ -1,141 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.renderToSvg = void 0;
-const react_1 = __importDefault(require("react"));
-const server_1 = require("react-dom/server");
-const mobx_1 = require("mobx");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const Base1DViewModel_1 = __importDefault(require("@jbrowse/core/util/Base1DViewModel"));
-// locals
-const Ruler_1 = __importDefault(require("./Ruler"));
-const __1 = require("..");
-const OverviewScalebar_1 = require("./OverviewScalebar");
-function Scalebar({ model, fontSize }) {
-    const { offsetPx, dynamicBlocks: { totalWidthPxWithoutBorders: totalWidthPx, totalBp }, } = model;
-    const displayBp = (0, util_1.getBpDisplayStr)(totalBp);
-    const x0 = Math.max(-offsetPx, 0);
-    const x1 = x0 + totalWidthPx;
-    return (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement("line", { x1: x0, x2: x1, y1: 10, y2: 10, stroke: "black" }),
-        react_1.default.createElement("line", { x1: x0, x2: x0, y1: 5, y2: 15, stroke: "black" }),
-        react_1.default.createElement("line", { x1: x1, x2: x1, y1: 5, y2: 15, stroke: "black" }),
-        react_1.default.createElement("text", { x: x0 + (x1 - x0) / 2, y: fontSize * 2, textAnchor: "middle", fontSize: fontSize }, displayBp)));
-}
-function SVGRuler({ model, fontSize, width, }) {
-    const { dynamicBlocks: { contentBlocks }, offsetPx: viewOffsetPx, bpPerPx, } = model;
-    const renderRuler = contentBlocks.length < 5;
-    return (react_1.default.createElement(react_1.default.Fragment, null,
-        react_1.default.createElement("defs", null,
-            react_1.default.createElement("clipPath", { id: "clip-ruler" },
-                react_1.default.createElement("rect", { x: 0, y: 0, width: width, height: 20 }))),
-        contentBlocks.map(block => {
-            const { key, start, end, reversed, offsetPx, refName } = block;
-            const offsetLeft = offsetPx - viewOffsetPx;
-            return (react_1.default.createElement("g", { key: `${key}`, transform: `translate(${offsetLeft} 0)` },
-                react_1.default.createElement("text", { x: offsetLeft / bpPerPx, y: fontSize, fontSize: fontSize }, refName),
-                renderRuler ? (react_1.default.createElement("g", { transform: "translate(0 20)", clipPath: "url(#clip-ruler)" },
-                    react_1.default.createElement(Ruler_1.default, { start: start, end: end, bpPerPx: bpPerPx, reversed: reversed }))) : (react_1.default.createElement("line", { strokeWidth: 1, stroke: "black", x1: start / bpPerPx, x2: end / bpPerPx, y1: 20, y2: 20 }))));
-        })));
-}
-const fontSize = 15;
-const rulerHeight = 50;
-const textHeight = fontSize + 5;
-const paddingHeight = 20;
-const headerHeight = textHeight + 20;
-const cytobandHeightIfExists = 100;
-const totalHeight = (tracks) => {
-    return tracks.reduce((accum, track) => {
-        const display = track.displays[0];
-        return accum + display.height + paddingHeight + textHeight;
-    }, 0);
-};
-// SVG component, ruler and assembly name
-const SVGHeader = ({ model }) => {
-    const { width, assemblyNames, showCytobands, displayedRegions } = model;
-    const { assemblyManager } = (0, util_1.getSession)(model);
-    const assemblyName = assemblyNames.length > 1 ? '' : assemblyNames[0];
-    const assembly = assemblyManager.get(assemblyName);
-    const overview = Base1DViewModel_1.default.create({
-        displayedRegions: JSON.parse(JSON.stringify(displayedRegions)),
-        interRegionPaddingWidth: 0,
-        minimumBlockWidth: model.minimumBlockWidth,
-    });
-    const visibleRegions = model.dynamicBlocks.contentBlocks;
-    overview.setVolatileWidth(width);
-    overview.showAllRegions();
-    const block = overview.dynamicBlocks.contentBlocks[0];
-    const first = visibleRegions[0];
-    const firstOverviewPx = overview.bpToPx({
-        ...first,
-        coord: first.reversed ? first.end : first.start,
-    }) || 0;
-    const last = visibleRegions[visibleRegions.length - 1];
-    const lastOverviewPx = overview.bpToPx({
-        ...last,
-        coord: last.reversed ? last.start : last.end,
-    }) || 0;
-    const cytobandHeight = showCytobands ? cytobandHeightIfExists : 0;
-    return (react_1.default.createElement("g", { id: "header" },
-        react_1.default.createElement("text", { x: 0, y: fontSize, fontSize: fontSize }, assemblyName),
-        showCytobands ? (react_1.default.createElement("g", { transform: `translate(0 ${rulerHeight})` },
-            react_1.default.createElement(OverviewScalebar_1.Cytobands, { overview: overview, assembly: assembly, block: block }),
-            react_1.default.createElement("rect", { stroke: "red", fill: "rgb(255,0,0,0.1)", width: Math.max(lastOverviewPx - firstOverviewPx, 0.5), height: __1.HEADER_OVERVIEW_HEIGHT - 1, x: firstOverviewPx, y: 0.5 }),
-            react_1.default.createElement("g", { transform: `translate(0,${__1.HEADER_OVERVIEW_HEIGHT})` },
-                react_1.default.createElement(OverviewScalebar_1.Polygon, { overview: overview, model: model, useOffset: false })))) : null,
-        react_1.default.createElement("g", { transform: `translate(0 ${fontSize + cytobandHeight})` },
-            react_1.default.createElement(Scalebar, { model: model, fontSize: fontSize })),
-        react_1.default.createElement("g", { transform: `translate(0 ${rulerHeight + cytobandHeight})` },
-            react_1.default.createElement(SVGRuler, { model: model, fontSize: fontSize, width: width }))));
-};
-// SVG component, region separator
-const SVGRegionSeparators = ({ model, height, }) => {
-    const { dynamicBlocks, offsetPx, interRegionPaddingWidth } = model;
-    return (react_1.default.createElement(react_1.default.Fragment, null, dynamicBlocks.contentBlocks.slice(1).map(block => (react_1.default.createElement("rect", { key: block.key, x: block.offsetPx - offsetPx - interRegionPaddingWidth, width: interRegionPaddingWidth, y: 0, height: height, stroke: "none", fill: "grey" })))));
-};
-// SVG component, tracks
-function SVGTracks({ displayResults, model, offset, }) {
-    return (react_1.default.createElement(react_1.default.Fragment, null, displayResults.map(({ track, result }) => {
-        const current = offset;
-        const trackName = (0, configuration_1.getConf)(track, 'name') ||
-            `Reference sequence (${(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(track.configuration), 'displayName') ||
-                (0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(track.configuration), 'name')})`;
-        const display = track.displays[0];
-        offset += display.height + paddingHeight + textHeight;
-        return (react_1.default.createElement("g", { key: track.configuration.trackId, transform: `translate(0 ${current})` },
-            react_1.default.createElement("text", { fontSize: fontSize, x: Math.max(-model.offsetPx, 0) }, trackName),
-            react_1.default.createElement("g", { transform: `translate(0 ${textHeight})` },
-                result,
-                react_1.default.createElement(SVGRegionSeparators, { model: model, height: display.height }))));
-    })));
-}
-// render LGV to SVG
-async function renderToSvg(model, opts) {
-    await (0, mobx_1.when)(() => model.initialized);
-    const { Wrapper = ({ children }) => react_1.default.createElement(react_1.default.Fragment, null, children) } = opts;
-    const { width, tracks, showCytobands } = model;
-    const shift = 50;
-    const offset = headerHeight +
-        rulerHeight +
-        (showCytobands ? cytobandHeightIfExists : 0) +
-        20;
-    const height = totalHeight(tracks) + offset;
-    const displayResults = await Promise.all(tracks.map(async (track) => {
-        const display = track.displays[0];
-        await (0, mobx_1.when)(() => (display.ready !== undefined ? display.ready : true));
-        return { track, result: await display.renderSvg(opts) };
-    }));
-    // the xlink namespace is used for rendering <image> tag
-    return (0, server_1.renderToStaticMarkup)(react_1.default.createElement(Wrapper, null,
-        react_1.default.createElement("svg", { width: width, height: height, xmlns: "http://www.w3.org/2000/svg", xmlnsXlink: "http://www.w3.org/1999/xlink", viewBox: [0, 0, width + shift * 2, height].toString() },
-            react_1.default.createElement("rect", { width: width + shift * 2, height: height, fill: "white" }),
-            react_1.default.createElement("g", { stroke: "none", transform: `translate(${shift} ${fontSize})` },
-                react_1.default.createElement(SVGHeader, { model: model }),
-                react_1.default.createElement(SVGTracks, { model: model, displayResults: displayResults, offset: offset })))));
-}
-exports.renderToSvg = renderToSvg;
-//# sourceMappingURL=LinearGenomeViewSvg.js.map

package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map

@@ -1 +0,0 @@
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package/dist/LinearGenomeView/components/Ruler.d.ts

@@ -1,11 +0,0 @@
-/// <reference types="react" />
-declare function Ruler({ start, end, bpPerPx, reversed, major, minor, }: {
-    start: number;
-    end: number;
-    bpPerPx: number;
-    reversed?: boolean;
-    major?: boolean;
-    minor?: boolean;
-}): JSX.Element;
-declare const _default: typeof Ruler;
-export default _default;

package/dist/LinearGenomeView/components/Ruler.js

@@ -1,39 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
-const mui_1 = require("tss-react/mui");
-const mobx_react_1 = require("mobx-react");
-const util_1 = require("@jbrowse/core/util");
-// locals
-const util_2 = require("../util");
-const useStyles = (0, mui_1.makeStyles)()({
-    majorTickLabel: {
-        fontSize: '11px',
-    },
-    majorTick: {
-        stroke: '#555',
-    },
-    minorTick: {
-        stroke: '#999',
-    },
-});
-function Ruler({ start, end, bpPerPx, reversed = false, major = true, minor = true, }) {
-    const { classes } = useStyles();
-    const ticks = (0, util_2.makeTicks)(start, end, bpPerPx, major, minor);
-    return (react_1.default.createElement(react_1.default.Fragment, null,
-        ticks.map(tick => {
-            const x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
-            return (react_1.default.createElement("line", { key: tick.base, x1: x, x2: x, y1: 0, y2: tick.type === 'major' ? 6 : 4, strokeWidth: 1, stroke: tick.type === 'major' ? '#555' : '#999', className: tick.type === 'major' ? classes.majorTick : classes.minorTick, "data-bp": tick.base }));
-        }),
-        ticks
-            .filter(tick => tick.type === 'major')
-            .map(tick => {
-            const x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
-            return (react_1.default.createElement("text", { x: x - 3, y: 7 + 11, key: `label-${tick.base}`, style: { fontSize: '11px' }, className: classes.majorTickLabel }, (0, util_1.getTickDisplayStr)(tick.base + 1, bpPerPx)));
-        })));
-}
-exports.default = (0, mobx_react_1.observer)(Ruler);
-//# sourceMappingURL=Ruler.js.map

package/dist/LinearGenomeView/components/Ruler.js.map

@@ -1 +0,0 @@
-{"version":3,"file":"Ruler.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Ruler.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,uCAA0C;AAC1C,2CAAqC;AACrC,6CAAsD;AAEtD,SAAS;AACT,kCAAmC;AAEnC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;KACjB;IACD,SAAS,EAAE;QACT,MAAM,EAAE,MAAM;KACf;IACD,SAAS,EAAE;QACT,MAAM,EAAE,MAAM;KACf;CACF,CAAC,CAAA;AAEF,SAAS,KAAK,CAAC,EACb,KAAK,EACL,GAAG,EACH,OAAO,EACP,QAAQ,GAAG,KAAK,EAChB,KAAK,GAAG,IAAI,EACZ,KAAK,GAAG,IAAI,GAQb;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,CAAA;IAC1D,OAAO,CACL;QACG,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;YAChB,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;YACpE,OAAO,CACL,wCACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EACjC,WAAW,EAAE,CAAC,EACd,MAAM,EAAE,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EAC/C,SAAS,EACP,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,aAEtD,IAAI,CAAC,IAAI,GAClB,CACH,CAAA;QACH,CAAC,CAAC;QACD,KAAK;aACH,MAAM,CAAC,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC;aACrC,GAAG,CAAC,IAAI,CAAC,EAAE;YACV,MAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;YACpE,OAAO,CACL,wCACE,CAAC,EAAE,CAAC,GAAG,CAAC,EACR,CAAC,EAAE,CAAC,GAAG,EAAE,EACT,GAAG,EAAE,SAAS,IAAI,CAAC,IAAI,EAAE,EACzB,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,EAC3B,SAAS,EAAE,OAAO,CAAC,cAAc,IAEhC,IAAA,wBAAiB,EAAC,IAAI,CAAC,IAAI,GAAG,CAAC,EAAE,OAAO,CAAC,CACrC,CACR,CAAA;QACH,CAAC,CAAC,CACH,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,KAAK,CAAC,CAAA"}

package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts

@@ -1,4 +0,0 @@
-import { LinearGenomeViewModel, ExportSvgOptions } from '..';
-type LGV = LinearGenomeViewModel;
-export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
-export {};

package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js

@@ -1,134 +0,0 @@
-import React from 'react';
-import { renderToStaticMarkup } from 'react-dom/server';
-import { when } from 'mobx';
-import { getParent } from 'mobx-state-tree';
-import { getConf, readConfObject } from '@jbrowse/core/configuration';
-import { getSession, getBpDisplayStr } from '@jbrowse/core/util';
-import Base1DView from '@jbrowse/core/util/Base1DViewModel';
-// locals
-import Ruler from './Ruler';
-import { HEADER_OVERVIEW_HEIGHT, } from '..';
-import { Polygon, Cytobands } from './OverviewScalebar';
-function Scalebar({ model, fontSize }) {
-    const { offsetPx, dynamicBlocks: { totalWidthPxWithoutBorders: totalWidthPx, totalBp }, } = model;
-    const displayBp = getBpDisplayStr(totalBp);
-    const x0 = Math.max(-offsetPx, 0);
-    const x1 = x0 + totalWidthPx;
-    return (React.createElement(React.Fragment, null,
-        React.createElement("line", { x1: x0, x2: x1, y1: 10, y2: 10, stroke: "black" }),
-        React.createElement("line", { x1: x0, x2: x0, y1: 5, y2: 15, stroke: "black" }),
-        React.createElement("line", { x1: x1, x2: x1, y1: 5, y2: 15, stroke: "black" }),
-        React.createElement("text", { x: x0 + (x1 - x0) / 2, y: fontSize * 2, textAnchor: "middle", fontSize: fontSize }, displayBp)));
-}
-function SVGRuler({ model, fontSize, width, }) {
-    const { dynamicBlocks: { contentBlocks }, offsetPx: viewOffsetPx, bpPerPx, } = model;
-    const renderRuler = contentBlocks.length < 5;
-    return (React.createElement(React.Fragment, null,
-        React.createElement("defs", null,
-            React.createElement("clipPath", { id: "clip-ruler" },
-                React.createElement("rect", { x: 0, y: 0, width: width, height: 20 }))),
-        contentBlocks.map(block => {
-            const { key, start, end, reversed, offsetPx, refName } = block;
-            const offsetLeft = offsetPx - viewOffsetPx;
-            return (React.createElement("g", { key: `${key}`, transform: `translate(${offsetLeft} 0)` },
-                React.createElement("text", { x: offsetLeft / bpPerPx, y: fontSize, fontSize: fontSize }, refName),
-                renderRuler ? (React.createElement("g", { transform: "translate(0 20)", clipPath: "url(#clip-ruler)" },
-                    React.createElement(Ruler, { start: start, end: end, bpPerPx: bpPerPx, reversed: reversed }))) : (React.createElement("line", { strokeWidth: 1, stroke: "black", x1: start / bpPerPx, x2: end / bpPerPx, y1: 20, y2: 20 }))));
-        })));
-}
-const fontSize = 15;
-const rulerHeight = 50;
-const textHeight = fontSize + 5;
-const paddingHeight = 20;
-const headerHeight = textHeight + 20;
-const cytobandHeightIfExists = 100;
-const totalHeight = (tracks) => {
-    return tracks.reduce((accum, track) => {
-        const display = track.displays[0];
-        return accum + display.height + paddingHeight + textHeight;
-    }, 0);
-};
-// SVG component, ruler and assembly name
-const SVGHeader = ({ model }) => {
-    const { width, assemblyNames, showCytobands, displayedRegions } = model;
-    const { assemblyManager } = getSession(model);
-    const assemblyName = assemblyNames.length > 1 ? '' : assemblyNames[0];
-    const assembly = assemblyManager.get(assemblyName);
-    const overview = Base1DView.create({
-        displayedRegions: JSON.parse(JSON.stringify(displayedRegions)),
-        interRegionPaddingWidth: 0,
-        minimumBlockWidth: model.minimumBlockWidth,
-    });
-    const visibleRegions = model.dynamicBlocks.contentBlocks;
-    overview.setVolatileWidth(width);
-    overview.showAllRegions();
-    const block = overview.dynamicBlocks.contentBlocks[0];
-    const first = visibleRegions[0];
-    const firstOverviewPx = overview.bpToPx({
-        ...first,
-        coord: first.reversed ? first.end : first.start,
-    }) || 0;
-    const last = visibleRegions[visibleRegions.length - 1];
-    const lastOverviewPx = overview.bpToPx({
-        ...last,
-        coord: last.reversed ? last.start : last.end,
-    }) || 0;
-    const cytobandHeight = showCytobands ? cytobandHeightIfExists : 0;
-    return (React.createElement("g", { id: "header" },
-        React.createElement("text", { x: 0, y: fontSize, fontSize: fontSize }, assemblyName),
-        showCytobands ? (React.createElement("g", { transform: `translate(0 ${rulerHeight})` },
-            React.createElement(Cytobands, { overview: overview, assembly: assembly, block: block }),
-            React.createElement("rect", { stroke: "red", fill: "rgb(255,0,0,0.1)", width: Math.max(lastOverviewPx - firstOverviewPx, 0.5), height: HEADER_OVERVIEW_HEIGHT - 1, x: firstOverviewPx, y: 0.5 }),
-            React.createElement("g", { transform: `translate(0,${HEADER_OVERVIEW_HEIGHT})` },
-                React.createElement(Polygon, { overview: overview, model: model, useOffset: false })))) : null,
-        React.createElement("g", { transform: `translate(0 ${fontSize + cytobandHeight})` },
-            React.createElement(Scalebar, { model: model, fontSize: fontSize })),
-        React.createElement("g", { transform: `translate(0 ${rulerHeight + cytobandHeight})` },
-            React.createElement(SVGRuler, { model: model, fontSize: fontSize, width: width }))));
-};
-// SVG component, region separator
-const SVGRegionSeparators = ({ model, height, }) => {
-    const { dynamicBlocks, offsetPx, interRegionPaddingWidth } = model;
-    return (React.createElement(React.Fragment, null, dynamicBlocks.contentBlocks.slice(1).map(block => (React.createElement("rect", { key: block.key, x: block.offsetPx - offsetPx - interRegionPaddingWidth, width: interRegionPaddingWidth, y: 0, height: height, stroke: "none", fill: "grey" })))));
-};
-// SVG component, tracks
-function SVGTracks({ displayResults, model, offset, }) {
-    return (React.createElement(React.Fragment, null, displayResults.map(({ track, result }) => {
-        const current = offset;
-        const trackName = getConf(track, 'name') ||
-            `Reference sequence (${readConfObject(getParent(track.configuration), 'displayName') ||
-                readConfObject(getParent(track.configuration), 'name')})`;
-        const display = track.displays[0];
-        offset += display.height + paddingHeight + textHeight;
-        return (React.createElement("g", { key: track.configuration.trackId, transform: `translate(0 ${current})` },
-            React.createElement("text", { fontSize: fontSize, x: Math.max(-model.offsetPx, 0) }, trackName),
-            React.createElement("g", { transform: `translate(0 ${textHeight})` },
-                result,
-                React.createElement(SVGRegionSeparators, { model: model, height: display.height }))));
-    })));
-}
-// render LGV to SVG
-export async function renderToSvg(model, opts) {
-    await when(() => model.initialized);
-    const { Wrapper = ({ children }) => React.createElement(React.Fragment, null, children) } = opts;
-    const { width, tracks, showCytobands } = model;
-    const shift = 50;
-    const offset = headerHeight +
-        rulerHeight +
-        (showCytobands ? cytobandHeightIfExists : 0) +
-        20;
-    const height = totalHeight(tracks) + offset;
-    const displayResults = await Promise.all(tracks.map(async (track) => {
-        const display = track.displays[0];
-        await when(() => (display.ready !== undefined ? display.ready : true));
-        return { track, result: await display.renderSvg(opts) };
-    }));
-    // the xlink namespace is used for rendering <image> tag
-    return renderToStaticMarkup(React.createElement(Wrapper, null,
-        React.createElement("svg", { width: width, height: height, xmlns: "http://www.w3.org/2000/svg", xmlnsXlink: "http://www.w3.org/1999/xlink", viewBox: [0, 0, width + shift * 2, height].toString() },
-            React.createElement("rect", { width: width + shift * 2, height: height, fill: "white" }),
-            React.createElement("g", { stroke: "none", transform: `translate(${shift} ${fontSize})` },
-                React.createElement(SVGHeader, { model: model }),
-                React.createElement(SVGTracks, { model: model, displayResults: displayResults, offset: offset })))));
-}
-//# sourceMappingURL=LinearGenomeViewSvg.js.map

package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map

@@ -1 +0,0 @@
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package/esm/LinearGenomeView/components/Ruler.d.ts

@@ -1,11 +0,0 @@
-/// <reference types="react" />
-declare function Ruler({ start, end, bpPerPx, reversed, major, minor, }: {
-    start: number;
-    end: number;
-    bpPerPx: number;
-    reversed?: boolean;
-    major?: boolean;
-    minor?: boolean;
-}): JSX.Element;
-declare const _default: typeof Ruler;
-export default _default;

package/esm/LinearGenomeView/components/Ruler.js

@@ -1,34 +0,0 @@
-import React from 'react';
-import { makeStyles } from 'tss-react/mui';
-import { observer } from 'mobx-react';
-import { getTickDisplayStr } from '@jbrowse/core/util';
-// locals
-import { makeTicks } from '../util';
-const useStyles = makeStyles()({
-    majorTickLabel: {
-        fontSize: '11px',
-    },
-    majorTick: {
-        stroke: '#555',
-    },
-    minorTick: {
-        stroke: '#999',
-    },
-});
-function Ruler({ start, end, bpPerPx, reversed = false, major = true, minor = true, }) {
-    const { classes } = useStyles();
-    const ticks = makeTicks(start, end, bpPerPx, major, minor);
-    return (React.createElement(React.Fragment, null,
-        ticks.map(tick => {
-            const x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
-            return (React.createElement("line", { key: tick.base, x1: x, x2: x, y1: 0, y2: tick.type === 'major' ? 6 : 4, strokeWidth: 1, stroke: tick.type === 'major' ? '#555' : '#999', className: tick.type === 'major' ? classes.majorTick : classes.minorTick, "data-bp": tick.base }));
-        }),
-        ticks
-            .filter(tick => tick.type === 'major')
-            .map(tick => {
-            const x = (reversed ? end - tick.base : tick.base - start) / bpPerPx;
-            return (React.createElement("text", { x: x - 3, y: 7 + 11, key: `label-${tick.base}`, style: { fontSize: '11px' }, className: classes.majorTickLabel }, getTickDisplayStr(tick.base + 1, bpPerPx)));
-        })));
-}
-export default observer(Ruler);
-//# sourceMappingURL=Ruler.js.map

package/esm/LinearGenomeView/components/Ruler.js.map

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