npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.2.1 → 2.2.2 - Mend

@jbrowse/plugin-linear-genome-view 2.2.1 → 2.2.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (184) hide show

package/dist/LinearGenomeView/components/RubberbandSpan.js ADDED Viewed

@@ -0,0 +1,90 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const react_1 = __importStar(require("react"));
+const mui_1 = require("tss-react/mui");
+const material_1 = require("@mui/material");
+const util_1 = require("@jbrowse/core/util");
+const useStyles = (0, mui_1.makeStyles)()(theme => {
+    const { primary, tertiary } = theme.palette;
+    const background = tertiary
+        ? (0, material_1.alpha)(tertiary.main, 0.7)
+        : (0, material_1.alpha)(primary.main, 0.7);
+    return {
+        rubberband: {
+            height: '100%',
+            background,
+            position: 'absolute',
+            zIndex: 10,
+            textAlign: 'center',
+            overflow: 'hidden',
+        },
+        rubberbandControl: {
+            cursor: 'crosshair',
+            width: '100%',
+            minHeight: 8,
+        },
+        rubberbandText: {
+            color: tertiary ? tertiary.contrastText : primary.contrastText,
+        },
+        popover: {
+            mouseEvents: 'none',
+            cursor: 'crosshair',
+        },
+        paper: {
+            paddingLeft: theme.spacing(1),
+            paddingRight: theme.spacing(1),
+        },
+    };
+});
+function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }) {
+    const ref = (0, react_1.useRef)(null);
+    const { classes } = useStyles();
+    return (react_1.default.createElement(react_1.default.Fragment, null,
+        ref.current ? (react_1.default.createElement(react_1.default.Fragment, null,
+            react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: {
+                    vertical: 'top',
+                    horizontal: 'left',
+                }, transformOrigin: {
+                    vertical: 'bottom',
+                    horizontal: 'right',
+                }, keepMounted: true, disableRestoreFocus: true },
+                react_1.default.createElement(material_1.Typography, null, (0, util_1.stringify)(leftBpOffset))),
+            react_1.default.createElement(material_1.Popover, { className: classes.popover, classes: {
+                    paper: classes.paper,
+                }, open: true, anchorEl: ref.current, anchorOrigin: {
+                    vertical: 'top',
+                    horizontal: 'right',
+                }, transformOrigin: {
+                    vertical: 'bottom',
+                    horizontal: 'left',
+                }, keepMounted: true, disableRestoreFocus: true },
+                react_1.default.createElement(material_1.Typography, null, (0, util_1.stringify)(rightBpOffset))))) : null,
+        react_1.default.createElement("div", { ref: ref, className: classes.rubberband, style: { left, width } }, numOfBpSelected ? (react_1.default.createElement(material_1.Typography, { variant: "h6", className: classes.rubberbandText },
+            (0, util_1.toLocale)(numOfBpSelected),
+            " bp")) : null)));
+}
+exports.default = RubberbandSpan;
+//# sourceMappingURL=RubberbandSpan.js.map

package/dist/LinearGenomeView/components/RubberbandSpan.js.map ADDED Viewed

@@ -0,0 +1 @@

+ {"version":3,"file":"RubberbandSpan.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RubberbandSpan.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAqC;AACrC,uCAA0C;AAE1C,4CAA0D;AAC1D,6CAAwD;AAExD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE;IACrC,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,GAAG,KAAK,CAAC,OAAO,CAAA;IAC3C,MAAM,UAAU,GAAG,QAAQ;QACzB,CAAC,CAAC,IAAA,gBAAK,EAAC,QAAQ,CAAC,IAAI,EAAE,GAAG,CAAC;QAC3B,CAAC,CAAC,IAAA,gBAAK,EAAC,OAAO,CAAC,IAAI,EAAE,GAAG,CAAC,CAAA;IAC5B,OAAO;QACL,UAAU,EAAE;YACV,MAAM,EAAE,MAAM;YACd,UAAU;YACV,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,EAAE;YACV,SAAS,EAAE,QAAQ;YACnB,QAAQ,EAAE,QAAQ;SACnB;QACD,iBAAiB,EAAE;YACjB,MAAM,EAAE,WAAW;YACnB,KAAK,EAAE,MAAM;YACb,SAAS,EAAE,CAAC;SACb;QACD,cAAc,EAAE;YACd,KAAK,EAAE,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,YAAY;SAC/D;QACD,OAAO,EAAE;YACP,WAAW,EAAE,MAAM;YACnB,MAAM,EAAE,WAAW;SACpB;QACD,KAAK,EAAE;YACL,WAAW,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;YAC7B,YAAY,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;SAC/B;KACF,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,SAAS,cAAc,CAAC,EACtB,YAAY,EACZ,aAAa,EACb,eAAe,EACf,IAAI,EACJ,KAAK,GAON;IACC,MAAM,GAAG,GAAG,IAAA,cAAM,EAAC,IAAI,CAAC,CAAA;IACxB,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,OAAO,CACL;QACG,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CACb;YACE,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,EAAE,EACjC,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE;oBACZ,QAAQ,EAAE,KAAK;oBACf,UAAU,EAAE,MAAM;iBACnB,EACD,eAAe,EAAE;oBACf,QAAQ,EAAE,QAAQ;oBAClB,UAAU,EAAE,OAAO;iBACpB,EACD,WAAW,QACX,mBAAmB;gBAEnB,8BAAC,qBAAU,QAAE,IAAA,gBAAS,EAAC,YAAY,CAAC,CAAc,CAC1C;YACV,8BAAC,kBAAO,IACN,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,OAAO,EAAE;oBACP,KAAK,EAAE,OAAO,CAAC,KAAK;iBACrB,EACD,IAAI,QACJ,QAAQ,EAAE,GAAG,CAAC,OAAO,EACrB,YAAY,EAAE;oBACZ,QAAQ,EAAE,KAAK;oBACf,UAAU,EAAE,OAAO;iBACpB,EACD,eAAe,EAAE;oBACf,QAAQ,EAAE,QAAQ;oBAClB,UAAU,EAAE,MAAM;iBACnB,EACD,WAAW,QACX,mBAAmB;gBAEnB,8BAAC,qBAAU,QAAE,IAAA,gBAAS,EAAC,aAAa,CAAC,CAAc,CAC3C,CACT,CACJ,CAAC,CAAC,CAAC,IAAI;QACR,uCAAK,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,OAAO,CAAC,UAAU,EAAE,KAAK,EAAE,EAAE,IAAI,EAAE,KAAK,EAAE,IACjE,eAAe,CAAC,CAAC,CAAC,CACjB,8BAAC,qBAAU,IAAC,OAAO,EAAC,IAAI,EAAC,SAAS,EAAE,OAAO,CAAC,cAAc;YACvD,IAAA,eAAQ,EAAC,eAAe,CAAC;kBACf,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACL,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,cAAc,CAAA"}

package/dist/LinearGenomeView/components/{ScaleBar.d.ts → Scalebar.d.ts} RENAMED Viewed

@@ -1,10 +1,10 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-interface ScaleBarProps {
+interface ScalebarProps {
     model: LGV;
     style?: React.CSSProperties;
     className?: string;
 }
-declare const _default: React.ForwardRefExoticComponent<ScaleBarProps & React.RefAttributes<HTMLDivElement>>;
+declare const _default: React.ForwardRefExoticComponent<ScalebarProps & React.RefAttributes<HTMLDivElement>>;
 export default _default;

package/dist/LinearGenomeView/components/{ScaleBar.js → Scalebar.js} RENAMED Viewed

@@ -12,15 +12,15 @@ const Block_1 = require("../../BaseLinearDisplay/components/Block");
 const util_1 = require("../util");
 const util_2 = require("@jbrowse/core/util");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    scaleBarContainer: {
+    scalebarContainer: {
         overflow: 'hidden',
         position: 'relative',
     },
-    scaleBarZoomContainer: {
+    scalebarZoomContainer: {
         position: 'relative',
         zIndex: 1,
     },
-    scaleBar: {
+    scalebar: {
         position: 'absolute',
         display: 'flex',
         pointerEvents: 'none',
@@ -70,7 +70,7 @@ const RenderedRefNameLabels = (0, mobx_react_1.observer)(({ model }) => {
             }, className: classes.refLabel, "data-testid": `refLabel-${block.refName}` }, block.refName)) : null;
     })));
 });
-const RenderedScaleBarLabels = (0, mobx_react_1.observer)(({ model }) => {
+const RenderedScalebarLabels = (0, mobx_react_1.observer)(({ model }) => {
     const { classes } = useStyles();
     const { bpPerPx, staticBlocks } = model;
     return (react_1.default.createElement(react_1.default.Fragment, null, staticBlocks.map((block, index) => {
@@ -95,23 +95,23 @@ const RenderedScaleBarLabels = (0, mobx_react_1.observer)(({ model }) => {
         return null;
     })));
 });
-const ScaleBar = react_1.default.forwardRef(({ model, style, className, ...other }, ref) => {
+const Scalebar = react_1.default.forwardRef(({ model, style, className, ...other }, ref) => {
     const { classes, cx } = useStyles();
     const offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
     return (react_1.default.createElement(material_1.Paper, { "data-resizer": "true" // used to avoid click-and-drag scrolls on trackscontainer
-        , className: cx(classes.scaleBarContainer, className), variant: "outlined", ref: ref, style: style, ...other },
-        react_1.default.createElement("div", { className: classes.scaleBarZoomContainer, style: {
+        , className: cx(classes.scalebarContainer, className), variant: "outlined", ref: ref, style: style, ...other },
+        react_1.default.createElement("div", { className: classes.scalebarZoomContainer, style: {
                 transform: model.scaleFactor !== 1
                     ? `scaleX(${model.scaleFactor})`
                     : undefined,
             } },
-            react_1.default.createElement("div", { className: classes.scaleBar, style: {
+            react_1.default.createElement("div", { className: classes.scalebar, style: {
                     left: offsetLeft - 1,
                     width: model.staticBlocks.totalWidthPx,
                     ...style,
                 } },
-                react_1.default.createElement(RenderedScaleBarLabels, { model: model }))),
+                react_1.default.createElement(RenderedScalebarLabels, { model: model }))),
         react_1.default.createElement(RenderedRefNameLabels, { model: model })));
 });
-exports.default = (0, mobx_react_1.observer)(ScaleBar);
-//# sourceMappingURL=ScaleBar.js.map
+exports.default = (0, mobx_react_1.observer)(Scalebar);
+//# sourceMappingURL=Scalebar.js.map

package/dist/LinearGenomeView/components/{ScaleBar.js.map → Scalebar.js.map} RENAMED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"Scalebar.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Scalebar.tsx"],"names":[],"mappings":";;;;;AAAA,4CAAiD;AACjD,uCAA0C;AAC1C,8DAIsC;AACtC,2CAAqC;AACrC,kDAAyB;AAEzB,oEAIiD;AACjD,kCAAmC;AACnC,6CAAsD;AAItD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,iBAAiB,EAAE;QACjB,QAAQ,EAAE,QAAQ;QAClB,QAAQ,EAAE,UAAU;KACrB;IACD,qBAAqB,EAAE;QACrB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,MAAM;KACtB;IACD,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;QAChB,MAAM,EAAE,CAAC;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;QAC1C,UAAU,EAAE,QAAQ;QACpB,aAAa,EAAE,MAAM;KACtB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,CAAC;QACR,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,aAAa,EAAE,MAAM;KACtB;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,MAAM;QAChB,QAAQ,EAAE,UAAU;QACpB,IAAI,EAAE,KAAK;QACX,GAAG,EAAE,MAAM;QACX,UAAU,EAAE,MAAM;QAClB,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;KAC3C;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,qBAAqB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACnE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,iEAAiE;IACjE,IAAI,aAAa,GAAG,CAAC,CAAA;IACrB,KAAK,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,CAAC,EAAE,EAAE;QACtC,IAAI,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC,EAAE;YACvC,aAAa,GAAG,CAAC,CAAA;SAClB;IACH,CAAC,CAAC,CAAA;IACF,OAAO,CACL,8DACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACvC,OAAO,KAAK,YAAY,yBAAY;YAClC,CAAC,KAAK,CAAC,0BAA0B,IAAI,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAChE,8BAAC,qBAAU,IACT,GAAG,EAAE,YAAY,KAAK,CAAC,GAAG,IAAI,KAAK,EAAE,EACrC,KAAK,EAAE;gBACL,IAAI,EACF,KAAK,KAAK,aAAa;oBACrB,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC;oBAC9B,CAAC,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC;gBACzC,WAAW,EAAE,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;aAC7C,EACD,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACd,YAAY,KAAK,CAAC,OAAO,EAAE,IAEvC,KAAK,CAAC,OAAO,CACH,CACd,CAAC,CAAC,CAAC,IAAI,CAAA;IACV,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,sBAAsB,GAAG,IAAA,qBAAQ,EAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IAEvC,OAAO,CACL,8DACG,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACjC,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QACpD,IAAI,KAAK,YAAY,yBAAY,EAAE;YACjC,MAAM,KAAK,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,CAAC,CAAA;YAEzD,OAAO,CACL,8BAAC,oBAAqB,IAAC,GAAG,EAAE,GAAG,GAAG,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IACxD,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;gBAChB,IAAI,IAAI,CAAC,IAAI,KAAK,OAAO,EAAE;oBACzB,MAAM,CAAC,GACL,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;oBAC5D,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,GAAG,CAAC,CAAA;oBAChC,OAAO,CACL,uCACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,IAEjB,UAAU,CAAC,CAAC,CAAC,CACZ,8BAAC,qBAAU,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,IAC1C,IAAA,wBAAiB,EAAC,UAAU,EAAE,OAAO,CAAC,CAC5B,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;iBACF;gBACD,OAAO,IAAI,CAAA;YACb,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,wBAAW,EAAE;YAChC,OAAO,8BAAC,mBAAoB,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,OAAO,GAAI,CAAA;SAC1D;QACD,IAAI,KAAK,YAAY,oCAAuB,EAAE;YAC5C,OAAO,CACL,8BAAC,+BAAgC,IAC/B,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,OAAO,EACd,KAAK,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,EAC7B,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,MAAM,QAAQ,GAAG,eAAK,CAAC,UAAU,CAC/B,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,KAAK,EAAE,EAAE,GAAG,EAAE,EAAE;IAC7C,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IAEnC,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,8BAAC,gBAAK,oBACS,MAAM,CAAC,0DAA0D;UAC9E,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,iBAAiB,EAAE,SAAS,CAAC,EACnD,OAAO,EAAC,UAAU,EAClB,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,KAAK,KACR,KAAK;QAET,uCACE,SAAS,EAAE,OAAO,CAAC,qBAAqB,EACxC,KAAK,EAAE;gBACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC;oBACrB,CAAC,CAAC,UAAU,KAAK,CAAC,WAAW,GAAG;oBAChC,CAAC,CAAC,SAAS;aAChB;YAED,uCACE,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,KAAK,EAAE;oBACL,IAAI,EAAE,UAAU,GAAG,CAAC;oBACpB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;oBACtC,GAAG,KAAK;iBACT;gBAED,8BAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF;QACN,8BAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI,CACjC,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,QAAQ,CAAC,CAAA"}

package/dist/LinearGenomeView/components/SearchBox.js CHANGED Viewed

@@ -26,11 +26,11 @@ function SearchBox({ model, showHelp, }) {
     const assemblyName = assemblyNames[0];
     const assembly = assemblyManager.get(assemblyName);
     const searchScope = model.searchScope(assemblyName);
-    function navToOption(option) {
+    async function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
         if (location) {
-            model.navToLocString(location, assemblyName);
+            await model.navToLocString(location, assemblyName);
             if (trackId) {
                 model.showTrack(trackId);
             }
@@ -44,7 +44,7 @@ function SearchBox({ model, showHelp, }) {
     async function handleSelectedRegion(option) {
         try {
             if (option.hasLocation()) {
-                navToOption(option);
+                await navToOption(option);
             }
             else {
                 const input = option.getLabel();
@@ -52,7 +52,7 @@ function SearchBox({ model, showHelp, }) {
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
                     (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
-                    model.navToLocString(input, assemblyName);
+                    await model.navToLocString(input, assemblyName);
                 }
                 else {
                     const results = await (0, util_2.fetchResults)({
@@ -67,10 +67,10 @@ function SearchBox({ model, showHelp, }) {
                         model.setSearchResults(results, input.toLowerCase());
                     }
                     else if (results.length === 1) {
-                        navToOption(results[0]);
+                        await navToOption(results[0]);
                     }
                     else {
-                        model.navToLocString(input, assemblyName);
+                        await model.navToLocString(input, assemblyName);
                     }
                 }
             }

package/dist/LinearGenomeView/components/SearchBox.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/components/SearchResultsDialog.js CHANGED Viewed

@@ -4,25 +4,12 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
-const mui_1 = require("tss-react/mui");
 const mobx_state_tree_1 = require("mobx-state-tree");
 const util_1 = require("@jbrowse/core/util");
+const ui_1 = require("@jbrowse/core/ui");
 const material_1 = require("@mui/material");
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    dialogContent: {
-        width: '80em',
-    },
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
 function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
     var _a, _b;
-    const { classes } = useStyles();
     const session = (0, util_1.getSession)(model);
     const { pluginManager } = (0, util_1.getEnv)(session);
     const { assemblyManager } = session;
@@ -41,7 +28,7 @@ function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
         throw new Error(`assembly ${assemblyName} regions not loaded`);
     }
     const assemblyRegions = assembly.regions;
-    function handleClick(location) {
+    async function handleClick(location) {
         try {
             const newRegion = assemblyRegions.find(region => location === region.refName);
             if (newRegion) {
@@ -51,7 +38,7 @@ function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
                 model.showAllRegions();
             }
             else {
-                model.navToLocString(location, assemblyName);
+                await model.navToLocString(location, assemblyName);
             }
         }
         catch (e) {
@@ -68,14 +55,7 @@ function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
         }
         return '';
     }
-    return (react_1.default.createElement(material_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Search results",
-            handleClose ? (react_1.default.createElement(material_1.IconButton, { "data-testid": "close-resultsDialog", className: classes.closeButton, onClick: () => {
-                    handleClose();
-                }, size: "large" },
-                react_1.default.createElement(Close_1.default, null))) : null),
-        react_1.default.createElement(material_1.Divider, null),
+    return (react_1.default.createElement(ui_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Search results" },
         react_1.default.createElement(material_1.DialogContent, null, !((_b = model.searchResults) === null || _b === void 0 ? void 0 : _b.length) ? (react_1.default.createElement(material_1.Typography, null,
             "No results found for ",
             react_1.default.createElement("b", null, model.searchQuery))) : (react_1.default.createElement(react_1.default.Fragment, null,
@@ -95,15 +75,21 @@ function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
                         react_1.default.createElement(material_1.TableCell, { align: "right" }, result.getLocation()),
                         react_1.default.createElement(material_1.TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
                         react_1.default.createElement(material_1.TableCell, { align: "right" },
-                            react_1.default.createElement(material_1.Button, { onClick: () => {
-                                    const location = result.getLocation();
-                                    if (location) {
-                                        handleClick(location);
-                                        const resultTrackId = result.getTrackId();
-                                        if (resultTrackId) {
-                                            model.showTrack(resultTrackId);
+                            react_1.default.createElement(material_1.Button, { onClick: async () => {
+                                    try {
+                                        const location = result.getLocation();
+                                        if (location) {
+                                            await handleClick(location);
+                                            const resultTrackId = result.getTrackId();
+                                            if (resultTrackId) {
+                                                model.showTrack(resultTrackId);
+                                            }
                                         }
                                     }
+                                    catch (e) {
+                                        console.error(e);
+                                        session.notify(`${e}`, 'error');
+                                    }
                                     handleClose();
                                 }, color: "primary", variant: "contained" }, "Go"))))))))))),
         react_1.default.createElement(material_1.Divider, null),

package/dist/LinearGenomeView/components/SearchResultsDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/components/SequenceSearchDialog.js CHANGED Viewed

@@ -22,29 +22,19 @@ var __importStar = (this && this.__importStar) || function (mod) {
     __setModuleDefault(result, mod);
     return result;
 };
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
+const ui_1 = require("@jbrowse/core/ui");
 const mobx_state_tree_1 = require("mobx-state-tree");
 const mui_1 = require("tss-react/mui");
 const mobx_react_1 = require("mobx-react");
 const util_1 = require("@jbrowse/core/util");
-// icons
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
+const useStyles = (0, mui_1.makeStyles)()({
     dialogContent: {
         width: '40em',
     },
-}));
+});
 function SequenceDialog({ model, handleClose, }) {
     const { classes } = useStyles();
     const [value, setValue] = (0, react_1.useState)('');
@@ -58,12 +48,7 @@ function SequenceDialog({ model, handleClose, }) {
     catch (e) {
         error = e;
     }
-    return (react_1.default.createElement(material_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
-        react_1.default.createElement(material_1.DialogTitle, null,
-            "Sequence search",
-            handleClose ? (react_1.default.createElement(material_1.IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
-                react_1.default.createElement(Close_1.default, null))) : null),
-        react_1.default.createElement(material_1.Divider, null),
+    return (react_1.default.createElement(ui_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Sequence search" },
         react_1.default.createElement(material_1.DialogContent, { className: classes.dialogContent },
             react_1.default.createElement(material_1.Typography, null, "Supply a sequence to search for. A track will be created with the resulting matches once submitted. You can also supply regex style expressions e.g. AACT(C|T)."),
             react_1.default.createElement(material_1.TextField, { value: value, onChange: e => setValue(e.target.value), helperText: "Sequence search pattern" }),

package/dist/LinearGenomeView/components/SequenceSearchDialog.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"SequenceSearchDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SequenceSearchDialog.tsx"],"names":[],"mappings":"~~;;;;;;;;;;;;;;;;;;;;;;;;;;;;~~AAAA,+CAAuC;AACvC,~~4CAasB~~;AACtB,qDAA6C;AAC7C,uCAA0C;AAC1C,2CAAqC;AACrC,6CAA+C;AAE/C,~~QAAQ;AACR,sEAAiD;AAEjD,~~MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC~~,KAAK,CAAC,EAAE,CAAC,CAAC~~;~~IACvC~~,~~WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;IACD,~~aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,~~CAAC,~~CAAA;~~AAEH~~,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACtC,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IAE5D,IAAI,KAAK,CAAA;IAET,IAAI;QACF,IAAI,MAAM,CAAC,KAAK,CAAC,CAAA;KAClB;IAAC,OAAO,CAAC,EAAE;QACV,KAAK,GAAG,CAAC,CAAA;KACV;IAED,OAAO,CACL,8BAAC,~~iBAAM~~,IAAC,QAAQ,EAAC,IAAI,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW~~;QAC7C~~,~~8BAAC,sBAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,qBAAU,IACT,SAAS,~~EAAE,~~OAAO~~,~~CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,IAAI,~~EAAC,~~OAAO~~;~~gBAEZ~~,8BAAC,~~eAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,8BAAC,kBAAO,OAAG;QAEX,8BAAC,~~wBAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC7C,8BAAC,qBAAU,0KAIE;YACb,8BAAC,oBAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EACvC,UAAU,EAAC,yBAAyB,GACpC;YACF,8BAAC,oBAAS;gBACR,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GAC3D,EAEJ,KAAK,EAAC,kBAAkB,GACxB,CACQ;YACX,KAAK,CAAC,CAAC,CAAC,8BAAC,qBAAU,IAAC,KAAK,EAAC,OAAO,IAAE,GAAG,KAAK,EAAE,CAAc,CAAC,CAAC,CAAC,IAAI,CACrD;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE;;oBACZ,IAAI,KAAK,EAAE;wBACT,MAAM,OAAO,GAAG,mBAAmB,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,CAAA;wBAChD,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;wBACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;wBACnC,MAAM,YAAY,GAAG,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;wBAC3C,OAAO,CAAC,YAAY,CAAC;4BACnB,OAAO;4BACP,IAAI,EAAE,mBAAmB,KAAK,EAAE;4BAChC,aAAa,EAAE,CAAC,YAAY,CAAC;4BAC7B,IAAI,EAAE,cAAc;4BACpB,OAAO,EAAE;gCACP,IAAI,EAAE,uBAAuB;gCAC7B,MAAM,EAAE,KAAK;gCACb,aAAa;gCACb,aAAa;gCACb,eAAe;gCACf,eAAe,EAAE,IAAA,6BAAW,EAC1B,MAAA,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,0CAAE,aAAa,CAAC,QAAQ,CACtD,OAAO,CACX;6BACF;yBACF,CAAC,CAAA;wBACF,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;qBAC3B;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,aAGR;YAET,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,YAGV,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}
1	+ {"version":3,"file":"SequenceSearchDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SequenceSearchDialog.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAuC;AACvC,4CASsB;AACtB,yCAAyC;AACzC,qDAA6C;AAC7C,uCAA0C;AAC1C,2CAAqC;AACrC,6CAA+C;AAE/C,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;CACF,CAAC,CAAA;AAEF,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,WAAW,GAIZ;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACtC,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IACxD,MAAM,CAAC,eAAe,EAAE,kBAAkB,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IAE5D,IAAI,KAAK,CAAA;IAET,IAAI;QACF,IAAI,MAAM,CAAC,KAAK,CAAC,CAAA;KAClB;IAAC,OAAO,CAAC,EAAE;QACV,KAAK,GAAG,CAAC,CAAA;KACV;IAED,OAAO,CACL,8BAAC,WAAM,IAAC,QAAQ,EAAC,IAAI,EAAC,IAAI,QAAC,OAAO,EAAE,WAAW,EAAE,KAAK,EAAC,iBAAiB;QACtE,8BAAC,wBAAa,IAAC,SAAS,EAAE,OAAO,CAAC,aAAa;YAC7C,8BAAC,qBAAU,0KAIE;YACb,8BAAC,oBAAS,IACR,KAAK,EAAE,KAAK,EACZ,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,EACvC,UAAU,EAAC,yBAAyB,GACpC;YACF,8BAAC,oBAAS;gBACR,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,aAAa,EACtB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,gBAAgB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GACzD,EAEJ,KAAK,EAAC,uBAAuB,GAC7B;gBACF,8BAAC,2BAAgB,IACf,OAAO,EACL,8BAAC,mBAAQ,IACP,OAAO,EAAE,eAAe,EACxB,QAAQ,EAAE,KAAK,CAAC,EAAE,CAAC,kBAAkB,CAAC,KAAK,CAAC,MAAM,CAAC,OAAO,CAAC,GAC3D,EAEJ,KAAK,EAAC,kBAAkB,GACxB,CACQ;YACX,KAAK,CAAC,CAAC,CAAC,8BAAC,qBAAU,IAAC,KAAK,EAAC,OAAO,IAAE,GAAG,KAAK,EAAE,CAAc,CAAC,CAAC,CAAC,IAAI,CACrD;QAChB,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE;;oBACZ,IAAI,KAAK,EAAE;wBACT,MAAM,OAAO,GAAG,mBAAmB,CAAC,IAAI,CAAC,GAAG,EAAE,EAAE,CAAA;wBAChD,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;wBACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;wBACnC,MAAM,YAAY,GAAG,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;wBAC3C,OAAO,CAAC,YAAY,CAAC;4BACnB,OAAO;4BACP,IAAI,EAAE,mBAAmB,KAAK,EAAE;4BAChC,aAAa,EAAE,CAAC,YAAY,CAAC;4BAC7B,IAAI,EAAE,cAAc;4BACpB,OAAO,EAAE;gCACP,IAAI,EAAE,uBAAuB;gCAC7B,MAAM,EAAE,KAAK;gCACb,aAAa;gCACb,aAAa;gCACb,eAAe;gCACf,eAAe,EAAE,IAAA,6BAAW,EAC1B,MAAA,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,0CAAE,aAAa,CAAC,QAAQ,CACtD,OAAO,CACX;6BACF;yBACF,CAAC,CAAA;wBACF,KAAK,CAAC,WAAW,CAAC,OAAO,CAAC,CAAA;qBAC3B;oBACD,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,aAGR;YAET,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAC5B,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,YAGV,CACK,CACT,CACV,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}

package/dist/LinearGenomeView/components/TrackContainer.js CHANGED Viewed

@@ -31,9 +31,9 @@ const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
 const mobx_react_1 = require("mobx-react");
 const mobx_state_tree_1 = require("mobx-state-tree");
+const react_error_boundary_1 = require("react-error-boundary");
 const configuration_1 = require("@jbrowse/core/configuration");
 const ui_1 = require("@jbrowse/core/ui");
-const react_error_boundary_1 = require("react-error-boundary");
 const util_1 = require("@jbrowse/core/util");
 const TrackLabel_1 = __importDefault(require("./TrackLabel"));
 const useStyles = (0, mui_1.makeStyles)()({
@@ -57,7 +57,7 @@ const useStyles = (0, mui_1.makeStyles)()({
     trackLabel: {
         zIndex: 3,
     },
-    // aligns with block bounderies. check for example the breakpoint split view
+    // aligns with block boundaries. check for example the breakpoint split view
     // demo to see if features align if wanting to change things
     renderingComponentContainer: {
         position: 'absolute',

package/dist/LinearGenomeView/components/TrackContainer.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"TrackContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackContainer.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAgD;AAChD,4CAAqC;AACrC,uCAA0C;AAC1C,2CAAqC;AACrC,qDAAyC;AACzC,+DAAoD;AAIpD,+DAAqD;AACrD,yCAA6D;AAC7D,6CAAyD;AAIzD,8DAAqC;AAErC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,SAAS,EAAE,CAAC;KACb;IACD,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,SAAS,EAAE,YAAY;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,OAAO,EAAE;QACP,aAAa,EAAE,MAAM;QACrB,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,IAAI,EAAE,CAAC;QACP,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;KACV;IACD,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;KACV;IAED,4EAA4E;IAC5E,4DAA4D;IAC5D,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,mDAAmD;QACnD,IAAI,EAAE,CAAC,CAAC;QACR,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;KACd;IACD,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,cAAc;KACxB;IACD,iBAAiB,EAAE;QACjB,QAAQ,EAAE,UAAU;KACrB;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAClC,CAAC,EAAE,KAAK,EAAE,IAAI,EAAwC,EAAE,EAAE;IACxD,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,UAAU,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAAA;IACnE,MAAM,UAAU,GACd,IAAI,CAAC,WAAW,KAAK,aAAa,IAAI,OAAO,CAAC,aAAa;QACzD,CAAC,CAAC,gBAAgB;QAClB,CAAC,CAAC,iBAAiB,CAAA;IAEvB,OAAO,IAAI,CAAC,WAAW,KAAK,QAAQ,CAAC,CAAC,CAAC,CACrC,8BAAC,oBAAU,IAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,CAAC,UAAU,EAAE,UAAU,CAAC,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAED,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,gBAAgB,EAAE,eAAe,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;IAC5D,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,GAAG,GAAG,IAAA,cAAM,EAAC,IAAI,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,eAAe,KAAK,SAAS,IAAI,eAAe,KAAK,OAAO,CAAC,EAAE,CAAA;IAC9E,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,oBAAoB,GAAG,IAAA,2BAAoB,EAAC,GAAG,EAAE;QACrD,IAAI,IAAA,yBAAO,EAAC,OAAO,CAAC,IAAI,MAAM,EAAE;YAC9B,SAAS,CAAC,eAAe,EAAE,KAAK,CAAC,EAAE,CAAC,CAAA;SACrC;IACH,CAAC,EAAE,GAAG,CAAC,CAAA;IACP,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,OAAO,CAAA;SACvC;QACD,OAAO,GAAG,EAAE;YACV,OAAO,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QACjC,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC,CAAA;IAE9B,OAAO,CACL,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,UAAU;QAChD,8BAAC,mBAAmB,IAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,GAAI;QAClD,8BAAC,oCAAa,IACZ,GAAG,EAAE,KAAK,CAAC,EAAE,EACb,iBAAiB,EAAE,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,8BAAC,iBAAY,IAAC,KAAK,EAAE,KAAK,GAAI;YAEhE,uCACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,EAC1C,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,GAAG,CAAC,aAAa,CAAC,SAAS,CAAC,EAClE,WAAW,EAAE,oBAAoB,iBACpB,2BAA2B,KAAK,CAAC,EAAE,IAAI,OAAO,EAAE,IAE5D,CAAC,SAAS,CAAC,CAAC,CAAC,CACZ;gBACE,uCACE,GAAG,EAAE,GAAG,EACR,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE,EAAE,SAAS,EAAE,UAAU,KAAK,CAAC,WAAW,GAAG,EAAE;oBAEpD,8BAAC,kBAAkB,IACjB,KAAK,EAAE,OAAO,EACd,kBAAkB,EAAE,gBAAgB,GACpC,CACE;gBAEL,YAAY,CAAC,CAAC,CAAC,CACd,uCACE,KAAK,EAAE;wBACL,QAAQ,EAAE,UAAU;wBACpB,IAAI,EAAE,CAAC;wBACP,GAAG,EAAE,OAAO,CAAC,MAAM,GAAG,EAAE;qBACzB;oBAED,8BAAC,YAAY,IAAC,KAAK,EAAE,OAAO,GAAI,CAC5B,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,uCACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE;gBACL,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,SAAS;aACtD,EACD,WAAW,EAAE,oBAAoB,GACjC;QACF,8BAAC,iBAAY,IACX,MAAM,EAAE,OAAO,CAAC,YAAY,EAC5B,SAAS,EAAE,OAAO,CAAC,YAAY,GAC/B,CACI,CACT,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}

package/dist/LinearGenomeView/components/TracksContainer.js CHANGED Viewed

@@ -29,13 +29,17 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importStar(require("react"));
 const mui_1 = require("tss-react/mui");
 const mobx_react_1 = require("mobx-react");
-const normalize_wheel_1 = __importDefault(require("normalize-wheel"));
-// locals
+const ui_1 = require("@jbrowse/core/ui");
+// local utils
 const __1 = require("..");
-const RubberBand_1 = __importDefault(require("./RubberBand"));
-const ScaleBar_1 = __importDefault(require("./ScaleBar"));
+const hooks_1 = require("./hooks");
+// local components
+const Rubberband_1 = __importDefault(require("./Rubberband"));
+const Scalebar_1 = __importDefault(require("./Scalebar"));
 const Gridlines_1 = __importDefault(require("./Gridlines"));
 const CenterLine_1 = __importDefault(require("./CenterLine"));
+const VerticalGuide_1 = __importDefault(require("./VerticalGuide"));
+const RubberbandSpan_1 = __importDefault(require("./RubberbandSpan"));
 const useStyles = (0, mui_1.makeStyles)()({
     tracksContainer: {
         position: 'relative',
@@ -48,123 +52,22 @@ const useStyles = (0, mui_1.makeStyles)()({
 });
 function TracksContainer({ children, model, }) {
     const { classes } = useStyles();
-    // refs are to store these variables to avoid repeated rerenders associated
-    // with useState/setState
-    const delta = (0, react_1.useRef)(0);
-    const scheduled = (0, react_1.useRef)(false);
-    const timeout = (0, react_1.useRef)();
+    const { mouseDown: mouseDown1, mouseUp } = (0, hooks_1.useSideScroll)(model);
     const ref = (0, react_1.useRef)(null);
-    const prevX = (0, react_1.useRef)(0);
-    const [mouseDragging, setMouseDragging] = (0, react_1.useState)(false);
-    (0, react_1.useEffect)(() => {
-        let cleanup = () => { };
-        function globalMouseMove(event) {
-            event.preventDefault();
-            const currX = event.clientX;
-            const distance = currX - prevX.current;
-            if (distance) {
-                // use rAF to make it so multiple event handlers aren't fired per-frame
-                // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
-                if (!scheduled.current) {
-                    scheduled.current = true;
-                    window.requestAnimationFrame(() => {
-                        model.horizontalScroll(-distance);
-                        scheduled.current = false;
-                        prevX.current = event.clientX;
-                    });
-                }
-            }
-        }
-        function globalMouseUp() {
-            prevX.current = 0;
-            if (mouseDragging) {
-                setMouseDragging(false);
-            }
-        }
-        if (mouseDragging) {
-            window.addEventListener('mousemove', globalMouseMove, true);
-            window.addEventListener('mouseup', globalMouseUp, true);
-            cleanup = () => {
-                window.removeEventListener('mousemove', globalMouseMove, true);
-                window.removeEventListener('mouseup', globalMouseUp, true);
-            };
-        }
-        return cleanup;
-    }, [model, mouseDragging, prevX]);
-    function mouseDown(event) {
-        // check if clicking a draggable element or a resize handle
-        const target = event.target;
-        if (target.draggable || target.dataset.resizer) {
-            return;
-        }
-        // otherwise do click and drag scroll
-        if (event.button === 0) {
-            prevX.current = event.clientX;
-            setMouseDragging(true);
-        }
-    }
-    // this local mouseup is used in addition to the global because sometimes
-    // the global add/remove are not called in time, resulting in issue #533
-    function mouseUp(event) {
-        event.preventDefault();
-        setMouseDragging(false);
-    }
-    function mouseLeave(event) {
-        event.preventDefault();
-    }
-    (0, react_1.useEffect)(() => {
-        const curr = ref.current;
-        // if ctrl is held down, zoom in with y-scroll
-        // else scroll horizontally with x-scroll
-        function onWheel(origEvent) {
-            const event = (0, normalize_wheel_1.default)(origEvent);
-            if (origEvent.ctrlKey === true) {
-                origEvent.preventDefault();
-                delta.current += event.pixelY / 500;
-                model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
-                if (timeout.current) {
-                    clearTimeout(timeout.current);
-                }
-                timeout.current = setTimeout(() => {
-                    model.setScaleFactor(1);
-                    model.zoomTo(delta.current > 0
-                        ? model.bpPerPx * (1 + delta.current)
-                        : model.bpPerPx / (1 - delta.current));
-                    delta.current = 0;
-                }, 300);
-            }
-            else {
-                // this is needed to stop the event from triggering "back button
-                // action" on MacOSX etc.  but is a heuristic to avoid preventing the
-                // inner-track scroll behavior
-                if (Math.abs(event.pixelX) > Math.abs(2 * event.pixelY)) {
-                    origEvent.preventDefault();
-                }
-                delta.current += event.pixelX;
-                if (!scheduled.current) {
-                    // use rAF to make it so multiple event handlers aren't fired per-frame
-                    // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
-                    scheduled.current = true;
-                    window.requestAnimationFrame(() => {
-                        model.horizontalScroll(delta.current);
-                        delta.current = 0;
-                        scheduled.current = false;
-                    });
-                }
-            }
-        }
-        if (curr) {
-            curr.addEventListener('wheel', onWheel);
-            return () => {
-                curr.removeEventListener('wheel', onWheel);
-            };
-        }
-        return () => { };
-    }, [model]);
-    return (react_1.default.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave },
+    const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, handleMenuItemClick, open, handleClose, mouseMove, mouseDown: mouseDown2, } = (0, hooks_1.useRangeSelect)(ref, model, true);
+    (0, hooks_1.useWheelScroll)(ref, model);
+    return (react_1.default.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: event => {
+            mouseDown1(event);
+            mouseDown2(event);
+        }, onMouseMove: mouseMove, onMouseUp: mouseUp },
         model.showGridlines ? react_1.default.createElement(Gridlines_1.default, { model: model }) : null,
         model.showCenterLine ? react_1.default.createElement(CenterLine_1.default, { model: model }) : null,
-        react_1.default.createElement(RubberBand_1.default, { model: model, ControlComponent: react_1.default.createElement(ScaleBar_1.default, { model: model, style: { height: __1.SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
+        guideX !== undefined ? (react_1.default.createElement(VerticalGuide_1.default, { model: model, coordX: guideX })) : rubberbandOn ? (react_1.default.createElement(RubberbandSpan_1.default, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, numOfBpSelected: numOfBpSelected, width: width, left: left })) : null,
+        anchorPosition ? (react_1.default.createElement(ui_1.Menu, { anchorReference: "anchorPosition", anchorPosition: {
+                left: anchorPosition.clientX,
+                top: anchorPosition.clientY,
+            }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null,
+        react_1.default.createElement(Rubberband_1.default, { model: model, ControlComponent: react_1.default.createElement(Scalebar_1.default, { model: model, style: { height: __1.SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
         children));
 }
 exports.default = (0, mobx_react_1.observer)(TracksContainer);