@jbrowse/plugin-linear-genome-view 2.2.1 → 2.2.2

package/esm/LinearGenomeView/components/OverviewScalebar.js.map

@@ -0,0 +1 @@
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package/esm/LinearGenomeView/components/RefNameAutocomplete.js

@@ -89,7 +89,7 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
     }, [assemblyName, fetchResults, debouncedSearch, session, model]);
     const inputBoxVal = coarseVisibleLocStrings || value || '';
     // heuristic, text width + icon width
-    // + 45 accomodates help icon and search icon
+    // + 45 accommodates help icon and search icon
     const width = Math.min(Math.max(measureText(inputBoxVal, 16) + 45, minWidth), 550);
     // notes on implementation:
     // The selectOnFocus setting helps highlight the field when clicked

package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/{RubberBand.d.ts → Rubberband.d.ts}

@@ -1,9 +1,9 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-declare function RubberBand({ model, ControlComponent, }: {
+declare function Rubberband({ model, ControlComponent, }: {
     model: LGV;
     ControlComponent?: React.ReactElement;
 }): JSX.Element;
-declare const _default: typeof RubberBand;
+declare const _default: typeof Rubberband;
 export default _default;

package/esm/LinearGenomeView/components/Rubberband.js

@@ -0,0 +1,29 @@
+import React, { useRef } from 'react';
+import { observer } from 'mobx-react';
+import { makeStyles } from 'tss-react/mui';
+import { Menu } from '@jbrowse/core/ui';
+// locals
+import VerticalGuide from './VerticalGuide';
+import RubberbandSpan from './RubberbandSpan';
+import { useRangeSelect } from './hooks';
+const useStyles = makeStyles()({
+    rubberbandControl: {
+        cursor: 'crosshair',
+        width: '100%',
+        minHeight: 8,
+    },
+});
+function Rubberband({ model, ControlComponent = React.createElement("div", null), }) {
+    const ref = useRef(null);
+    const { classes } = useStyles();
+    const { guideX, rubberbandOn, leftBpOffset, rightBpOffset, numOfBpSelected, width, left, anchorPosition, handleMenuItemClick, open, handleClose, mouseMove, mouseDown, mouseOut, } = useRangeSelect(ref, model);
+    return (React.createElement(React.Fragment, null,
+        guideX !== undefined ? (React.createElement(VerticalGuide, { model: model, coordX: guideX })) : rubberbandOn ? (React.createElement(RubberbandSpan, { leftBpOffset: leftBpOffset, rightBpOffset: rightBpOffset, numOfBpSelected: numOfBpSelected, width: width, left: left })) : null,
+        anchorPosition ? (React.createElement(Menu, { anchorReference: "anchorPosition", anchorPosition: {
+                left: anchorPosition.clientX,
+                top: anchorPosition.clientY,
+            }, onMenuItemClick: handleMenuItemClick, open: open, onClose: handleClose, menuItems: model.rubberBandMenuItems() })) : null,
+        React.createElement("div", { "data-testid": "rubberband_controls", className: classes.rubberbandControl, ref: ref, onMouseDown: mouseDown, onMouseMove: mouseMove, onMouseOut: mouseOut }, ControlComponent)));
+}
+export default observer(Rubberband);
+//# sourceMappingURL=Rubberband.js.map

package/esm/LinearGenomeView/components/Rubberband.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"Rubberband.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Rubberband.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AACrC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AAEvC,SAAS;AACT,OAAO,aAAa,MAAM,iBAAiB,CAAA;AAC3C,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,EAAE,cAAc,EAAE,MAAM,SAAS,CAAA;AAKxC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,iBAAiB,EAAE;QACjB,MAAM,EAAE,WAAW;QACnB,KAAK,EAAE,MAAM;QACb,SAAS,EAAE,CAAC;KACb;CACF,CAAC,CAAA;AAEF,SAAS,UAAU,CAAC,EAClB,KAAK,EACL,gBAAgB,GAAG,gCAAO,GAI3B;IACC,MAAM,GAAG,GAAG,MAAM,CAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,MAAM,EACJ,MAAM,EACN,YAAY,EACZ,YAAY,EACZ,aAAa,EACb,eAAe,EACf,KAAK,EACL,IAAI,EACJ,cAAc,EACd,mBAAmB,EACnB,IAAI,EACJ,WAAW,EACX,SAAS,EACT,SAAS,EACT,QAAQ,GACT,GAAG,cAAc,CAAC,GAAG,EAAE,KAAK,CAAC,CAAA;IAE9B,OAAO,CACL;QACG,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,CACtB,oBAAC,aAAa,IAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,GAAI,CAChD,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,CACjB,oBAAC,cAAc,IACb,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAE,aAAa,EAC5B,eAAe,EAAE,eAAe,EAChC,KAAK,EAAE,KAAK,EACZ,IAAI,EAAE,IAAI,GACV,CACH,CAAC,CAAC,CAAC,IAAI;QACP,cAAc,CAAC,CAAC,CAAC,CAChB,oBAAC,IAAI,IACH,eAAe,EAAC,gBAAgB,EAChC,cAAc,EAAE;gBACd,IAAI,EAAE,cAAc,CAAC,OAAO;gBAC5B,GAAG,EAAE,cAAc,CAAC,OAAO;aAC5B,EACD,eAAe,EAAE,mBAAmB,EACpC,IAAI,EAAE,IAAI,EACV,OAAO,EAAE,WAAW,EACpB,SAAS,EAAE,KAAK,CAAC,mBAAmB,EAAE,GACtC,CACH,CAAC,CAAC,CAAC,IAAI;QACR,4CACc,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,iBAAiB,EACpC,GAAG,EAAE,GAAG,EACR,WAAW,EAAE,SAAS,EACtB,WAAW,EAAE,SAAS,EACtB,UAAU,EAAE,QAAQ,IAEnB,gBAAgB,CACb,CACL,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}

package/esm/LinearGenomeView/components/RubberbandSpan.d.ts

@@ -0,0 +1,14 @@
+/// <reference types="react" />
+interface Offset {
+    coord: number;
+    refName?: string;
+    oob?: boolean;
+}
+declare function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }: {
+    leftBpOffset: Offset;
+    rightBpOffset: Offset;
+    numOfBpSelected?: number;
+    left: number;
+    width: number;
+}): JSX.Element;
+export default RubberbandSpan;

package/esm/LinearGenomeView/components/RubberbandSpan.js

@@ -0,0 +1,65 @@
+import React, { useRef } from 'react';
+import { makeStyles } from 'tss-react/mui';
+import { Popover, Typography, alpha } from '@mui/material';
+import { stringify, toLocale } from '@jbrowse/core/util';
+const useStyles = makeStyles()(theme => {
+    const { primary, tertiary } = theme.palette;
+    const background = tertiary
+        ? alpha(tertiary.main, 0.7)
+        : alpha(primary.main, 0.7);
+    return {
+        rubberband: {
+            height: '100%',
+            background,
+            position: 'absolute',
+            zIndex: 10,
+            textAlign: 'center',
+            overflow: 'hidden',
+        },
+        rubberbandControl: {
+            cursor: 'crosshair',
+            width: '100%',
+            minHeight: 8,
+        },
+        rubberbandText: {
+            color: tertiary ? tertiary.contrastText : primary.contrastText,
+        },
+        popover: {
+            mouseEvents: 'none',
+            cursor: 'crosshair',
+        },
+        paper: {
+            paddingLeft: theme.spacing(1),
+            paddingRight: theme.spacing(1),
+        },
+    };
+});
+function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, width, }) {
+    const ref = useRef(null);
+    const { classes } = useStyles();
+    return (React.createElement(React.Fragment, null,
+        ref.current ? (React.createElement(React.Fragment, null,
+            React.createElement(Popover, { className: classes.popover, classes: { paper: classes.paper }, open: true, anchorEl: ref.current, anchorOrigin: {
+                    vertical: 'top',
+                    horizontal: 'left',
+                }, transformOrigin: {
+                    vertical: 'bottom',
+                    horizontal: 'right',
+                }, keepMounted: true, disableRestoreFocus: true },
+                React.createElement(Typography, null, stringify(leftBpOffset))),
+            React.createElement(Popover, { className: classes.popover, classes: {
+                    paper: classes.paper,
+                }, open: true, anchorEl: ref.current, anchorOrigin: {
+                    vertical: 'top',
+                    horizontal: 'right',
+                }, transformOrigin: {
+                    vertical: 'bottom',
+                    horizontal: 'left',
+                }, keepMounted: true, disableRestoreFocus: true },
+                React.createElement(Typography, null, stringify(rightBpOffset))))) : null,
+        React.createElement("div", { ref: ref, className: classes.rubberband, style: { left, width } }, numOfBpSelected ? (React.createElement(Typography, { variant: "h6", className: classes.rubberbandText },
+            toLocale(numOfBpSelected),
+            " bp")) : null)));
+}
+export default RubberbandSpan;
+//# sourceMappingURL=RubberbandSpan.js.map

package/esm/LinearGenomeView/components/RubberbandSpan.js.map

@@ -0,0 +1 @@
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package/esm/LinearGenomeView/components/{ScaleBar.d.ts → Scalebar.d.ts}

@@ -1,10 +1,10 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
 type LGV = LinearGenomeViewModel;
-interface ScaleBarProps {
+interface ScalebarProps {
     model: LGV;
     style?: React.CSSProperties;
     className?: string;
 }
-declare const _default: React.ForwardRefExoticComponent<ScaleBarProps & React.RefAttributes<HTMLDivElement>>;
+declare const _default: React.ForwardRefExoticComponent<ScalebarProps & React.RefAttributes<HTMLDivElement>>;
 export default _default;

package/esm/LinearGenomeView/components/{ScaleBar.js → Scalebar.js}

@@ -7,15 +7,15 @@ import { ContentBlock as ContentBlockComponent, ElidedBlock as ElidedBlockCompon
 import { makeTicks } from '../util';
 import { getTickDisplayStr } from '@jbrowse/core/util';
 const useStyles = makeStyles()(theme => ({
-    scaleBarContainer: {
+    scalebarContainer: {
         overflow: 'hidden',
         position: 'relative',
     },
-    scaleBarZoomContainer: {
+    scalebarZoomContainer: {
         position: 'relative',
         zIndex: 1,
     },
-    scaleBar: {
+    scalebar: {
         position: 'absolute',
         display: 'flex',
         pointerEvents: 'none',
@@ -65,7 +65,7 @@ const RenderedRefNameLabels = observer(({ model }) => {
             }, className: classes.refLabel, "data-testid": `refLabel-${block.refName}` }, block.refName)) : null;
     })));
 });
-const RenderedScaleBarLabels = observer(({ model }) => {
+const RenderedScalebarLabels = observer(({ model }) => {
     const { classes } = useStyles();
     const { bpPerPx, staticBlocks } = model;
     return (React.createElement(React.Fragment, null, staticBlocks.map((block, index) => {
@@ -90,23 +90,23 @@ const RenderedScaleBarLabels = observer(({ model }) => {
         return null;
     })));
 });
-const ScaleBar = React.forwardRef(({ model, style, className, ...other }, ref) => {
+const Scalebar = React.forwardRef(({ model, style, className, ...other }, ref) => {
     const { classes, cx } = useStyles();
     const offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
     return (React.createElement(Paper, { "data-resizer": "true" // used to avoid click-and-drag scrolls on trackscontainer
-        , className: cx(classes.scaleBarContainer, className), variant: "outlined", ref: ref, style: style, ...other },
-        React.createElement("div", { className: classes.scaleBarZoomContainer, style: {
+        , className: cx(classes.scalebarContainer, className), variant: "outlined", ref: ref, style: style, ...other },
+        React.createElement("div", { className: classes.scalebarZoomContainer, style: {
                 transform: model.scaleFactor !== 1
                     ? `scaleX(${model.scaleFactor})`
                     : undefined,
             } },
-            React.createElement("div", { className: classes.scaleBar, style: {
+            React.createElement("div", { className: classes.scalebar, style: {
                     left: offsetLeft - 1,
                     width: model.staticBlocks.totalWidthPx,
                     ...style,
                 } },
-                React.createElement(RenderedScaleBarLabels, { model: model }))),
+                React.createElement(RenderedScalebarLabels, { model: model }))),
         React.createElement(RenderedRefNameLabels, { model: model })));
 });
-export default observer(ScaleBar);
-//# sourceMappingURL=ScaleBar.js.map
+export default observer(Scalebar);
+//# sourceMappingURL=Scalebar.js.map

package/esm/LinearGenomeView/components/{ScaleBar.js.map → Scalebar.js.map}

@@ -1 +1 @@
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+{"version":3,"file":"Scalebar.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Scalebar.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACjD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EACL,YAAY,EACZ,WAAW,EACX,uBAAuB,GACxB,MAAM,+BAA+B,CAAA;AACtC,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,KAAK,MAAM,OAAO,CAAA;AAEzB,OAAO,EACL,YAAY,IAAI,qBAAqB,EACrC,WAAW,IAAI,oBAAoB,EACnC,uBAAuB,IAAI,gCAAgC,GAC5D,MAAM,0CAA0C,CAAA;AACjD,OAAO,EAAE,SAAS,EAAE,MAAM,SAAS,CAAA;AACnC,OAAO,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAItD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,iBAAiB,EAAE;QACjB,QAAQ,EAAE,QAAQ;QAClB,QAAQ,EAAE,UAAU;KACrB;IACD,qBAAqB,EAAE;QACrB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,MAAM;KACtB;IACD,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;QAChB,MAAM,EAAE,CAAC;QACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;QAC1C,UAAU,EAAE,QAAQ;QACpB,aAAa,EAAE,MAAM;KACtB;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,CAAC;QACR,OAAO,EAAE,MAAM;QACf,cAAc,EAAE,QAAQ;QACxB,aAAa,EAAE,MAAM;KACtB;IACD,QAAQ,EAAE;QACR,QAAQ,EAAE,MAAM;QAChB,QAAQ,EAAE,UAAU;QACpB,IAAI,EAAE,KAAK;QACX,GAAG,EAAE,MAAM;QACX,UAAU,EAAE,MAAM;QAClB,UAAU,EAAE,QAAQ;QACpB,MAAM,EAAE,CAAC;QACT,aAAa,EAAE,MAAM;QACrB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;KAC3C;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,qBAAqB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACnE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,iEAAiE;IACjE,IAAI,aAAa,GAAG,CAAC,CAAA;IACrB,KAAK,CAAC,YAAY,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,CAAC,EAAE,EAAE;QACtC,IAAI,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC,EAAE;YACvC,aAAa,GAAG,CAAC,CAAA;SAClB;IACH,CAAC,CAAC,CAAA;IACF,OAAO,CACL,0CACG,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACvC,OAAO,KAAK,YAAY,YAAY;YAClC,CAAC,KAAK,CAAC,0BAA0B,IAAI,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAChE,oBAAC,UAAU,IACT,GAAG,EAAE,YAAY,KAAK,CAAC,GAAG,IAAI,KAAK,EAAE,EACrC,KAAK,EAAE;gBACL,IAAI,EACF,KAAK,KAAK,aAAa;oBACrB,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,KAAK,CAAC,QAAQ,CAAC;oBAC9B,CAAC,CAAC,KAAK,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,GAAG,CAAC;gBACzC,WAAW,EAAE,KAAK,KAAK,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;aAC7C,EACD,SAAS,EAAE,OAAO,CAAC,QAAQ,iBACd,YAAY,KAAK,CAAC,OAAO,EAAE,IAEvC,KAAK,CAAC,OAAO,CACH,CACd,CAAC,CAAC,CAAC,IAAI,CAAA;IACV,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,MAAM,sBAAsB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IACpE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,OAAO,EAAE,YAAY,EAAE,GAAG,KAAK,CAAA;IAEvC,OAAO,CACL,0CACG,YAAY,CAAC,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACjC,MAAM,EAAE,QAAQ,EAAE,KAAK,EAAE,GAAG,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;QACpD,IAAI,KAAK,YAAY,YAAY,EAAE;YACjC,MAAM,KAAK,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,IAAI,EAAE,KAAK,CAAC,CAAA;YAEzD,OAAO,CACL,oBAAC,qBAAqB,IAAC,GAAG,EAAE,GAAG,GAAG,IAAI,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,IACxD,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE;gBAChB,IAAI,IAAI,CAAC,IAAI,KAAK,OAAO,EAAE;oBACzB,MAAM,CAAC,GACL,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;oBAC5D,MAAM,UAAU,GAAG,IAAI,CAAC,IAAI,GAAG,CAAC,CAAA;oBAChC,OAAO,CACL,6BACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,SAAS,EAAE,OAAO,CAAC,IAAI,EACvB,KAAK,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,IAEjB,UAAU,CAAC,CAAC,CAAC,CACZ,oBAAC,UAAU,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,IAC1C,iBAAiB,CAAC,UAAU,EAAE,OAAO,CAAC,CAC5B,CACd,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;iBACF;gBACD,OAAO,IAAI,CAAA;YACb,CAAC,CAAC,CACoB,CACzB,CAAA;SACF;QACD,IAAI,KAAK,YAAY,WAAW,EAAE;YAChC,OAAO,oBAAC,oBAAoB,IAAC,GAAG,EAAE,GAAG,EAAE,KAAK,EAAE,OAAO,GAAI,CAAA;SAC1D;QACD,IAAI,KAAK,YAAY,uBAAuB,EAAE;YAC5C,OAAO,CACL,oBAAC,gCAAgC,IAC/B,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,OAAO,EACd,KAAK,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,EAC7B,QAAQ,EAAE,KAAK,CAAC,OAAO,KAAK,UAAU,GACtC,CACH,CAAA;SACF;QACD,OAAO,IAAI,CAAA;IACb,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC,CAAC,CAAA;AAQF,MAAM,QAAQ,GAAG,KAAK,CAAC,UAAU,CAC/B,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,GAAG,KAAK,EAAE,EAAE,GAAG,EAAE,EAAE;IAC7C,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IAEnC,MAAM,UAAU,GAAG,KAAK,CAAC,YAAY,CAAC,QAAQ,GAAG,KAAK,CAAC,QAAQ,CAAA;IAC/D,OAAO,CACL,oBAAC,KAAK,oBACS,MAAM,CAAC,0DAA0D;UAC9E,SAAS,EAAE,EAAE,CAAC,OAAO,CAAC,iBAAiB,EAAE,SAAS,CAAC,EACnD,OAAO,EAAC,UAAU,EAClB,GAAG,EAAE,GAAG,EACR,KAAK,EAAE,KAAK,KACR,KAAK;QAET,6BACE,SAAS,EAAE,OAAO,CAAC,qBAAqB,EACxC,KAAK,EAAE;gBACL,SAAS,EACP,KAAK,CAAC,WAAW,KAAK,CAAC;oBACrB,CAAC,CAAC,UAAU,KAAK,CAAC,WAAW,GAAG;oBAChC,CAAC,CAAC,SAAS;aAChB;YAED,6BACE,SAAS,EAAE,OAAO,CAAC,QAAQ,EAC3B,KAAK,EAAE;oBACL,IAAI,EAAE,UAAU,GAAG,CAAC;oBACpB,KAAK,EAAE,KAAK,CAAC,YAAY,CAAC,YAAY;oBACtC,GAAG,KAAK;iBACT;gBAED,oBAAC,sBAAsB,IAAC,KAAK,EAAE,KAAK,GAAI,CACpC,CACF;QACN,oBAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI,CACjC,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,QAAQ,CAAC,CAAA"}

package/esm/LinearGenomeView/components/SearchBox.js

@@ -21,11 +21,11 @@ function SearchBox({ model, showHelp, }) {
     const assemblyName = assemblyNames[0];
     const assembly = assemblyManager.get(assemblyName);
     const searchScope = model.searchScope(assemblyName);
-    function navToOption(option) {
+    async function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
         if (location) {
-            model.navToLocString(location, assemblyName);
+            await model.navToLocString(location, assemblyName);
             if (trackId) {
                 model.showTrack(trackId);
             }
@@ -39,7 +39,7 @@ function SearchBox({ model, showHelp, }) {
     async function handleSelectedRegion(option) {
         try {
             if (option.hasLocation()) {
-                navToOption(option);
+                await navToOption(option);
             }
             else {
                 const input = option.getLabel();
@@ -47,7 +47,7 @@ function SearchBox({ model, showHelp, }) {
                 const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
                 if (allRefs.includes(input) ||
                     (allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
-                    model.navToLocString(input, assemblyName);
+                    await model.navToLocString(input, assemblyName);
                 }
                 else {
                     const results = await fetchResults({
@@ -62,10 +62,10 @@ function SearchBox({ model, showHelp, }) {
                         model.setSearchResults(results, input.toLowerCase());
                     }
                     else if (results.length === 1) {
-                        navToOption(results[0]);
+                        await navToOption(results[0]);
                     }
                     else {
-                        model.navToLocString(input, assemblyName);
+                        await model.navToLocString(input, assemblyName);
                     }
                 }
             }

package/esm/LinearGenomeView/components/SearchBox.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/SearchResultsDialog.js

@@ -1,23 +1,10 @@
 import React from 'react';
-import { makeStyles } from 'tss-react/mui';
 import { resolveIdentifier, getRoot } from 'mobx-state-tree';
 import { getSession, getEnv } from '@jbrowse/core/util';
-import { Button, Dialog, DialogActions, DialogContent, DialogTitle, Divider, IconButton, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Typography, } from '@mui/material';
-import CloseIcon from '@mui/icons-material/Close';
-const useStyles = makeStyles()(theme => ({
-    dialogContent: {
-        width: '80em',
-    },
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
-}));
+import { Dialog } from '@jbrowse/core/ui';
+import { Button, DialogActions, DialogContent, Divider, Paper, Table, TableBody, TableCell, TableContainer, TableHead, TableRow, Typography, } from '@mui/material';
 export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
     var _a, _b;
-    const { classes } = useStyles();
     const session = getSession(model);
     const { pluginManager } = getEnv(session);
     const { assemblyManager } = session;
@@ -36,7 +23,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
         throw new Error(`assembly ${assemblyName} regions not loaded`);
     }
     const assemblyRegions = assembly.regions;
-    function handleClick(location) {
+    async function handleClick(location) {
         try {
             const newRegion = assemblyRegions.find(region => location === region.refName);
             if (newRegion) {
@@ -46,7 +33,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
                 model.showAllRegions();
             }
             else {
-                model.navToLocString(location, assemblyName);
+                await model.navToLocString(location, assemblyName);
             }
         }
         catch (e) {
@@ -63,14 +50,7 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
         }
         return '';
     }
-    return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Search results",
-            handleClose ? (React.createElement(IconButton, { "data-testid": "close-resultsDialog", className: classes.closeButton, onClick: () => {
-                    handleClose();
-                }, size: "large" },
-                React.createElement(CloseIcon, null))) : null),
-        React.createElement(Divider, null),
+    return (React.createElement(Dialog, { open: true, maxWidth: "xl", onClose: handleClose, title: "Search results" },
         React.createElement(DialogContent, null, !((_b = model.searchResults) === null || _b === void 0 ? void 0 : _b.length) ? (React.createElement(Typography, null,
             "No results found for ",
             React.createElement("b", null, model.searchQuery))) : (React.createElement(React.Fragment, null,
@@ -90,15 +70,21 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
                         React.createElement(TableCell, { align: "right" }, result.getLocation()),
                         React.createElement(TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
                         React.createElement(TableCell, { align: "right" },
-                            React.createElement(Button, { onClick: () => {
-                                    const location = result.getLocation();
-                                    if (location) {
-                                        handleClick(location);
-                                        const resultTrackId = result.getTrackId();
-                                        if (resultTrackId) {
-                                            model.showTrack(resultTrackId);
+                            React.createElement(Button, { onClick: async () => {
+                                    try {
+                                        const location = result.getLocation();
+                                        if (location) {
+                                            await handleClick(location);
+                                            const resultTrackId = result.getTrackId();
+                                            if (resultTrackId) {
+                                                model.showTrack(resultTrackId);
+                                            }
                                         }
                                     }
+                                    catch (e) {
+                                        console.error(e);
+                                        session.notify(`${e}`, 'error');
+                                    }
                                     handleClose();
                                 }, color: "primary", variant: "contained" }, "Go"))))))))))),
         React.createElement(Divider, null),

package/esm/LinearGenomeView/components/SearchResultsDialog.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/SequenceSearchDialog.js

@@ -1,22 +1,15 @@
 import React, { useState } from 'react';
-import { Button, Checkbox, Dialog, DialogActions, DialogContent, DialogTitle, Divider, FormGroup, FormControlLabel, IconButton, TextField, Typography, } from '@mui/material';
+import { Button, Checkbox, DialogActions, DialogContent, FormGroup, FormControlLabel, TextField, Typography, } from '@mui/material';
+import { Dialog } from '@jbrowse/core/ui';
 import { getSnapshot } from 'mobx-state-tree';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { getSession } from '@jbrowse/core/util';
-// icons
-import CloseIcon from '@mui/icons-material/Close';
-const useStyles = makeStyles()(theme => ({
-    closeButton: {
-        position: 'absolute',
-        right: theme.spacing(1),
-        top: theme.spacing(1),
-        color: theme.palette.grey[500],
-    },
+const useStyles = makeStyles()({
     dialogContent: {
         width: '40em',
     },
-}));
+});
 function SequenceDialog({ model, handleClose, }) {
     const { classes } = useStyles();
     const [value, setValue] = useState('');
@@ -30,12 +23,7 @@ function SequenceDialog({ model, handleClose, }) {
     catch (e) {
         error = e;
     }
-    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose },
-        React.createElement(DialogTitle, null,
-            "Sequence search",
-            handleClose ? (React.createElement(IconButton, { className: classes.closeButton, onClick: () => handleClose(), size: "large" },
-                React.createElement(CloseIcon, null))) : null),
-        React.createElement(Divider, null),
+    return (React.createElement(Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Sequence search" },
         React.createElement(DialogContent, { className: classes.dialogContent },
             React.createElement(Typography, null, "Supply a sequence to search for. A track will be created with the resulting matches once submitted. You can also supply regex style expressions e.g. AACT(C|T)."),
             React.createElement(TextField, { value: value, onChange: e => setValue(e.target.value), helperText: "Sequence search pattern" }),

package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map

@@ -1 +1 @@
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package/esm/LinearGenomeView/components/TrackContainer.js

@@ -3,9 +3,9 @@ import { Paper } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
 import { observer } from 'mobx-react';
 import { isAlive } from 'mobx-state-tree';
+import { ErrorBoundary } from 'react-error-boundary';
 import { getConf } from '@jbrowse/core/configuration';
 import { ResizeHandle, ErrorMessage } from '@jbrowse/core/ui';
-import { ErrorBoundary } from 'react-error-boundary';
 import { useDebouncedCallback } from '@jbrowse/core/util';
 import TrackLabel from './TrackLabel';
 const useStyles = makeStyles()({
@@ -29,7 +29,7 @@ const useStyles = makeStyles()({
     trackLabel: {
         zIndex: 3,
     },
-    // aligns with block bounderies. check for example the breakpoint split view
+    // aligns with block boundaries. check for example the breakpoint split view
     // demo to see if features align if wanting to change things
     renderingComponentContainer: {
         position: 'absolute',

package/esm/LinearGenomeView/components/TrackContainer.js.map

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