@jbrowse/plugin-linear-genome-view 2.2.0 → 2.2.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/Tooltip.d.ts +1 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +3 -3
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +2 -2
- package/dist/BasicTrack/index.d.ts +1 -1
- package/dist/BasicTrack/index.js +4 -4
- package/dist/BasicTrack/index.js.map +1 -1
- package/dist/LinearBasicDisplay/model.d.ts +2 -2
- package/dist/LinearGenomeView/components/CenterLine.d.ts +1 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +1 -1
- package/dist/LinearGenomeView/components/Gridlines.d.ts +1 -1
- package/dist/LinearGenomeView/components/Header.d.ts +1 -1
- package/dist/LinearGenomeView/components/ImportForm.d.ts +1 -1
- package/dist/LinearGenomeView/components/ImportForm.js +8 -7
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +1 -3
- package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +1 -1
- package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +1 -1
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +1 -1
- package/dist/LinearGenomeView/components/RubberBand.d.ts +1 -1
- package/dist/LinearGenomeView/components/ScaleBar.d.ts +1 -1
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +1 -1
- package/dist/LinearGenomeView/components/TrackContainer.js +12 -9
- package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +9 -1
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
- package/dist/LinearGenomeView/index.d.ts +84 -3
- package/dist/LinearGenomeView/index.js +143 -63
- package/dist/LinearGenomeView/index.js.map +1 -1
- package/dist/index.d.ts +18 -6
- package/esm/BaseLinearDisplay/components/Tooltip.d.ts +1 -1
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +3 -3
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +2 -2
- package/esm/BasicTrack/index.d.ts +1 -1
- package/esm/BasicTrack/index.js +4 -4
- package/esm/BasicTrack/index.js.map +1 -1
- package/esm/LinearBasicDisplay/model.d.ts +2 -2
- package/esm/LinearGenomeView/components/CenterLine.d.ts +1 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +1 -1
- package/esm/LinearGenomeView/components/Gridlines.d.ts +1 -1
- package/esm/LinearGenomeView/components/Header.d.ts +1 -1
- package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -1
- package/esm/LinearGenomeView/components/ImportForm.js +8 -7
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +2 -4
- package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +1 -1
- package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +1 -1
- package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +1 -1
- package/esm/LinearGenomeView/components/RubberBand.d.ts +1 -1
- package/esm/LinearGenomeView/components/ScaleBar.d.ts +1 -1
- package/esm/LinearGenomeView/components/TrackContainer.d.ts +1 -1
- package/esm/LinearGenomeView/components/TrackContainer.js +13 -10
- package/esm/LinearGenomeView/components/TrackContainer.js.map +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js +9 -1
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -1
- package/esm/LinearGenomeView/index.d.ts +84 -3
- package/esm/LinearGenomeView/index.js +143 -63
- package/esm/LinearGenomeView/index.js.map +1 -1
- package/esm/index.d.ts +18 -6
- package/package.json +2 -2
- package/src/BasicTrack/index.ts +4 -8
- package/src/LinearGenomeView/components/ImportForm.tsx +9 -7
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +2 -8
- package/src/LinearGenomeView/components/TrackContainer.tsx +38 -27
- package/src/LinearGenomeView/components/TrackLabel.tsx +10 -1
- package/src/LinearGenomeView/index.tsx +154 -73
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@@ -14,7 +14,7 @@ export interface Layout {
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maxY: number;
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name: string;
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}
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-
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type LayoutRecord = [number, number, number, number];
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export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<string>;
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@@ -369,6 +369,6 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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userBpPerPxLimit: number | undefined;
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userByteSizeLimit: number | undefined;
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}>;
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export
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export
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export type BaseLinearDisplayStateModel = typeof BaseLinearDisplay;
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export type BaseLinearDisplayModel = Instance<BaseLinearDisplayStateModel>;
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export {};
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@@ -49,8 +49,8 @@ declare const blockState: import("mobx-state-tree").IModelType<{
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beforeDestroy(): void;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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export default blockState;
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export
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export
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export type BlockStateModel = typeof blockState;
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export type BlockModel = Instance<BlockStateModel>;
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export declare function renderBlockData(self: BlockModel, optDisplay?: AbstractDisplayModel): {
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rendererType: any;
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rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
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package/esm/BasicTrack/index.js
CHANGED
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@@ -1,12 +1,12 @@
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import { createBaseTrackModel, TrackType, } from '@jbrowse/core/pluggableElementTypes';
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import configSchemaF from './configSchema';
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export default (
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const configSchema = configSchemaF(
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export default (pm) => {
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pm.addTrackType(() => {
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const configSchema = configSchemaF(pm);
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return new TrackType({
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name: 'BasicTrack',
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configSchema,
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stateModel: createBaseTrackModel(
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stateModel: createBaseTrackModel(pm, 'BasicTrack', configSchema),
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});
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});
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};
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@@ -1 +1 @@
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-
{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BasicTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,oBAAoB,EACpB,SAAS,GACV,MAAM,qCAAqC,CAAA;AAE5C,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,
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{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/BasicTrack/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,oBAAoB,EACpB,SAAS,GACV,MAAM,qCAAqC,CAAA;AAE5C,OAAO,aAAa,MAAM,gBAAgB,CAAA;AAE1C,eAAe,CAAC,EAAiB,EAAE,EAAE;IACnC,EAAE,CAAC,YAAY,CAAC,GAAG,EAAE;QACnB,MAAM,YAAY,GAAG,aAAa,CAAC,EAAE,CAAC,CAAA;QAEtC,OAAO,IAAI,SAAS,CAAC;YACnB,IAAI,EAAE,YAAY;YAClB,YAAY;YACZ,UAAU,EAAE,oBAAoB,CAAC,EAAE,EAAE,YAAY,EAAE,YAAY,CAAC;SACjE,CAAC,CAAA;IACJ,CAAC,CAAC,CAAA;AACJ,CAAC,CAAA"}
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@@ -292,6 +292,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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userBpPerPxLimit: number | undefined;
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userByteSizeLimit: number | undefined;
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} & import("mobx-state-tree")._NotCustomized>;
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export
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export
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export type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
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export type FeatureTrackModel = Instance<FeatureTrackStateModel>;
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export default stateModelFactory;
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@@ -4,6 +4,7 @@ import { observer } from 'mobx-react';
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import { getSession } from '@jbrowse/core/util';
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import { Button, CircularProgress, FormControl, Container, Grid, } from '@mui/material';
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import { ErrorMessage, AssemblySelector } from '@jbrowse/core/ui';
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// icons
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import CloseIcon from '@mui/icons-material/Close';
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// locals
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import RefNameAutocomplete from './RefNameAutocomplete';
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@@ -27,7 +28,6 @@ const ImportForm = observer(({ model }) => {
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const { assemblyNames, assemblyManager, textSearchManager } = session;
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const { rankSearchResults, isSearchDialogDisplayed, error } = model;
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const [selectedAsm, setSelectedAsm] = useState(assemblyNames[0]);
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const [importError, setImportError] = useState(error);
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const [option, setOption] = useState();
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const searchScope = model.searchScope(selectedAsm);
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const assembly = assemblyManager.get(selectedAsm);
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? assembly === null || assembly === void 0 ? void 0 : assembly.error
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: 'No configured assemblies';
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const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
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const
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const displayError = assemblyError || error;
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const [value, setValue] = useState('');
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const r0 = (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName;
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// useEffect resets to an "initial state" of displaying first region from assembly
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// after assembly change
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// after assembly change. needs to react to selectedAsm as well as r0 because changing
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// assembly will run setValue('') and then r0 may not change if assembly names are the
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// same across assemblies, but it still needs to be reset
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useEffect(() => {
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setValue(r0);
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}, [r0]);
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}, [r0, selectedAsm]);
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function navToOption(option) {
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const location = option.getLocation();
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const trackId = option.getTrackId();
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// implementation notes:
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// having this wrapped in a form allows intuitive use of enter key to submit
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return (React.createElement("div", { className: classes.container },
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displayError ? React.createElement(ErrorMessage, { error: displayError }) : null,
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React.createElement(Container, { className: classes.importFormContainer },
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React.createElement("form", { onSubmit: event => {
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event.preventDefault();
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React.createElement(FormControl, null,
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React.createElement(AssemblySelector, { onChange: val => {
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setImportError('');
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setSelectedAsm(val);
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setValue('');
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}, session: session, selected: selectedAsm }))),
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React.createElement(Grid, { item: true }, selectedAsm ? (
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React.createElement(Grid, { item: true }, selectedAsm ? (assemblyError ? (React.createElement(CloseIcon, { style: { color: 'red' } })) : value ? (React.createElement(FormControl, null,
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React.createElement(RefNameAutocomplete, { fetchResults: queryString => fetchResults({
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queryString,
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{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AACxD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EACL,MAAM,EACN,gBAAgB,EAChB,WAAW,EACX,SAAS,EACT,IAAI,GACL,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,YAAY,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAA;
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{"version":3,"file":"ImportForm.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ImportForm.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,OAAO,CAAA;AACxD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EACL,MAAM,EACN,gBAAgB,EAChB,WAAW,EACX,SAAS,EACT,IAAI,GACL,MAAM,eAAe,CAAA;AACtB,OAAO,EAAE,YAAY,EAAE,gBAAgB,EAAE,MAAM,kBAAkB,CAAA;AAGjE,QAAQ;AACR,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAEjD,SAAS;AACT,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,QAAQ,CAAA;AAEhD,MAAM,mBAAmB,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,uBAAuB,CAAC,CAAC,CAAA;AAEvE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,mBAAmB,EAAE;QACnB,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;IACD,MAAM,EAAE;QACN,MAAM,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KACzB;IACD,SAAS,EAAE;QACT,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AAIH,MAAM,UAAU,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;;IACxD,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,eAAe,EAAE,iBAAiB,EAAE,GAAG,OAAO,CAAA;IACrE,MAAM,EAAE,iBAAiB,EAAE,uBAAuB,EAAE,KAAK,EAAE,GAAG,KAAK,CAAA;IACnE,MAAM,CAAC,WAAW,EAAE,cAAc,CAAC,GAAG,QAAQ,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAA;IAChE,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,EAAc,CAAA;IAElD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,WAAW,CAAC,CAAA;IAElD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,WAAW,CAAC,CAAA;IACjD,MAAM,aAAa,GAAG,aAAa,CAAC,MAAM;QACxC,CAAC,CAAC,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,KAAK;QACjB,CAAC,CAAC,0BAA0B,CAAA;IAC9B,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IACvC,MAAM,YAAY,GAAG,aAAa,IAAI,KAAK,CAAA;IAC3C,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtC,MAAM,EAAE,GAAG,MAAA,OAAO,CAAC,CAAC,CAAC,0CAAE,OAAO,CAAA;IAE9B,kFAAkF;IAClF,sFAAsF;IACtF,sFAAsF;IACtF,yDAAyD;IACzD,SAAS,CAAC,GAAG,EAAE;QACb,QAAQ,CAAC,EAAE,CAAC,CAAA;IACd,CAAC,EAAE,CAAC,EAAE,EAAE,WAAW,CAAC,CAAC,CAAA;IAErB,SAAS,WAAW,CAAC,MAAkB;QACrC,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACnC,IAAI,QAAQ,EAAE;YACZ,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAA;YAC3C,IAAI,OAAO,EAAE;gBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;aACzB;SACF;IACH,CAAC;IAED,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,KAAa;QAC/C,IAAI;YACF,IAAI,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,gBAAgB,EAAE,MAAK,KAAK,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE;gBAChE,WAAW,CAAC,MAAM,CAAC,CAAA;aACpB;iBAAM;gBACL,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACzC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,wBAAwB,KAAI,EAAE,CAAA;gBACxD,IACE,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;oBACvB,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EAC5D;oBACA,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,WAAW,CAAC,CAAA;iBACzC;qBAAM;oBACL,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC;wBACjC,WAAW,EAAE,KAAK;wBAClB,UAAU,EAAE,OAAO;wBACnB,WAAW;wBACX,iBAAiB;wBACjB,iBAAiB;wBACjB,QAAQ;qBACT,CAAC,CAAA;oBAEF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;wBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;qBACrD;yBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;wBAC/B,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;qBACxB;yBAAM;wBACL,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,WAAW,CAAC,CAAA;qBACzC;iBACF;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,wBAAwB;IACxB,4EAA4E;IAC5E,OAAO,CACL,6BAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC9B,YAAY,CAAC,CAAC,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,YAAY,GAAI,CAAC,CAAC,CAAC,IAAI;QAC5D,oBAAC,SAAS,IAAC,SAAS,EAAE,OAAO,CAAC,mBAAmB;YAC/C,8BACE,QAAQ,EAAE,KAAK,CAAC,EAAE;oBAChB,KAAK,CAAC,cAAc,EAAE,CAAA;oBACtB,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oBACzB,IAAI,KAAK,EAAE;wBACT,oBAAoB,CAAC,KAAK,CAAC,CAAA;qBAC5B;gBACH,CAAC;gBAED,oBAAC,IAAI,IACH,SAAS,QACT,OAAO,EAAE,CAAC,EACV,cAAc,EAAC,QAAQ,EACvB,UAAU,EAAC,QAAQ;oBAEnB,oBAAC,IAAI,IAAC,IAAI;wBACR,oBAAC,WAAW;4BACV,oBAAC,gBAAgB,IACf,QAAQ,EAAE,GAAG,CAAC,EAAE;oCACd,cAAc,CAAC,GAAG,CAAC,CAAA;oCACnB,QAAQ,CAAC,EAAE,CAAC,CAAA;gCACd,CAAC,EACD,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,WAAW,GACrB,CACU,CACT;oBACP,oBAAC,IAAI,IAAC,IAAI,UACP,WAAW,CAAC,CAAC,CAAC,CACb,aAAa,CAAC,CAAC,CAAC,CACd,oBAAC,SAAS,IAAC,KAAK,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,GAAI,CACvC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CACV,oBAAC,WAAW;wBACV,oBAAC,mBAAmB,IAClB,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,YAAY,CAAC;gCACX,WAAW;gCACX,QAAQ;gCACR,iBAAiB;gCACjB,iBAAiB;gCACjB,WAAW;6BACZ,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,YAAY,EAAE,aAAa,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC,WAAW,EACrD,KAAK,EAAE,KAAK;4BACZ,0DAA0D;4BAC1D,QAAQ,EAAE,GAAG,EACb,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,QAAQ,CAAC,GAAG,CAAC,EAC9B,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,EAC/B,cAAc,EAAE;gCACd,OAAO,EAAE,UAAU;gCACnB,UAAU,EACR,gDAAgD;gCAClD,KAAK,EAAE,EAAE,QAAQ,EAAE,OAAO,EAAE;6BAC7B,GACD,CACU,CACf,CAAC,CAAC,CAAC,CACF,oBAAC,gBAAgB,IACf,IAAI,EAAC,aAAa,EAClB,IAAI,EAAE,EAAE,EACR,aAAa,SACb,CACH,CACF,CAAC,CAAC,CAAC,IAAI,CACH;oBACP,oBAAC,IAAI,IAAC,IAAI;wBACR,oBAAC,WAAW;4BACV,oBAAC,MAAM,IACL,IAAI,EAAC,QAAQ,EACb,QAAQ,EAAE,CAAC,KAAK,EAChB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,WAGR,CACG;wBACd,oBAAC,WAAW;4BACV,oBAAC,MAAM,IACL,QAAQ,EAAE,CAAC,KAAK,EAChB,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,OAAO,EAAE,GAAG,EAAE;oCACZ,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,CAAA;oCACzB,KAAK,CAAC,wBAAwB,CAAC,WAAW,CAAC,CAAA;gCAC7C,CAAC,EACD,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,WAAW,mCAGV,CACG,CACT,CACF,CACF,CACG;QACX,uBAAuB,CAAC,CAAC,CAAC,CACzB,oBAAC,mBAAmB,IAClB,KAAK,EAAE,KAAK,EACZ,eAAe,EAAE,WAAW,EAC5B,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,SAAS,CAAC,GAC/D,CACH,CAAC,CAAC,CAAC,IAAI,CACJ,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,UAAU,CAAA"}
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@@ -1,9 +1,8 @@
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1
1
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import React from 'react';
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2
2
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import { Button, Paper, Typography } from '@mui/material';
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3
3
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import { makeStyles } from 'tss-react/mui';
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4
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-
import { ErrorBoundary } from 'react-error-boundary';
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import { TrackSelector as TrackSelectorIcon } from '@jbrowse/core/ui/Icons';
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-
import { LoadingEllipses
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5
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+
import { LoadingEllipses } from '@jbrowse/core/ui';
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import { observer } from 'mobx-react';
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import TrackContainer from './TrackContainer';
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import TracksContainer from './TracksContainer';
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@@ -35,8 +34,7 @@ const LinearGenomeView = observer(({ model }) => {
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React.createElement(MiniControlsComponent, { model: model }),
|
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35
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React.createElement(TracksContainer, { model: model }, !tracks.length ? (React.createElement(Paper, { variant: "outlined", className: classes.note }, !model.hideNoTracksActive ? (React.createElement(React.Fragment, null,
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React.createElement(Typography, null, "No tracks active."),
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-
React.createElement(Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: React.createElement(TrackSelectorIcon, null) }, "Open track selector"))) : (React.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (React.createElement(
|
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39
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-
React.createElement(TrackContainer, { model: model, track: track }))))))));
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+
React.createElement(Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: React.createElement(TrackSelectorIcon, null) }, "Open track selector"))) : (React.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (React.createElement(TrackContainer, { key: track.id, model: model, track: track })))))));
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});
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export default LinearGenomeView;
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//# sourceMappingURL=LinearGenomeView.js.map
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"LinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/LinearGenomeView.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACzD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,aAAa,
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1
|
+
{"version":3,"file":"LinearGenomeView.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/LinearGenomeView.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AACzD,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,aAAa,IAAI,iBAAiB,EAAE,MAAM,wBAAwB,CAAA;AAC3E,OAAO,EAAE,eAAe,EAAE,MAAM,kBAAkB,CAAA;AAClD,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAIrC,OAAO,cAAc,MAAM,kBAAkB,CAAA;AAC7C,OAAO,eAAe,MAAM,mBAAmB,CAAA;AAC/C,OAAO,UAAU,MAAM,cAAc,CAAA;AACrC,OAAO,iBAAiB,MAAM,qBAAqB,CAAA;AACnD,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AAIvD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QAC5B,aAAa,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAChC;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,gBAAgB,GAAG,QAAQ,CAAC,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC9D,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,WAAW,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IACjE,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAE/B,IAAI,CAAC,WAAW,IAAI,CAAC,KAAK,EAAE;QAC1B,OAAO,oBAAC,eAAe,IAAC,OAAO,EAAC,IAAI,GAAG,CAAA;KACxC;IACD,IAAI,CAAC,mBAAmB,IAAI,KAAK,EAAE;QACjC,OAAO,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAA;KACpC;IAED,MAAM,qBAAqB,GAAG,KAAK,CAAC,qBAAqB,EAAE,CAAA;IAC3D,MAAM,eAAe,GAAG,KAAK,CAAC,eAAe,EAAE,CAAA;IAE/C,OAAO,CACL,6BAAK,KAAK,EAAE,EAAE,QAAQ,EAAE,UAAU,EAAE;QACjC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC1B,oBAAC,iBAAiB,IAChB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,wBAAwB,CAAC,KAAK,CAAC,GACxD,CACH,CAAC,CAAC,CAAC,IAAI;QACP,KAAK,CAAC,uBAAuB,CAAC,CAAC,CAAC,CAC/B,oBAAC,mBAAmB,IAClB,KAAK,EAAE,KAAK,EACZ,WAAW,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,gBAAgB,CAAC,SAAS,EAAE,SAAS,CAAC,GAC/D,CACH,CAAC,CAAC,CAAC,IAAI;QACR,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,GAAI;QACjC,oBAAC,qBAAqB,IAAC,KAAK,EAAE,KAAK,GAAI;QACvC,oBAAC,eAAe,IAAC,KAAK,EAAE,KAAK,IAC1B,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,CAChB,oBAAC,KAAK,IAAC,OAAO,EAAC,UAAU,EAAC,SAAS,EAAE,OAAO,CAAC,IAAI,IAC9C,CAAC,KAAK,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAC3B;YACE,oBAAC,UAAU,4BAA+B;YAC1C,oBAAC,MAAM,IACL,OAAO,EAAC,WAAW,EACnB,KAAK,EAAC,SAAS,EACf,OAAO,EAAE,KAAK,CAAC,qBAAqB,EACpC,KAAK,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,EACvB,SAAS,EAAE,oBAAC,iBAAiB,OAAG,0BAGzB,CACR,CACJ,CAAC,CAAC,CAAC,CACF,6BAAK,KAAK,EAAE,EAAE,MAAM,EAAE,MAAM,EAAE,GAAQ,CACvC,CACK,CACT,CAAC,CAAC,CAAC,CACF,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,CAAC,CAClB,oBAAC,cAAc,IAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,EAAE,KAAK,GAAI,CAC9D,CAAC,CACH,CACe,CACd,CACP,CAAA;AACH,CAAC,CAAC,CAAA;AAEF,eAAe,gBAAgB,CAAA"}
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@@ -1,7 +1,7 @@
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1
1
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import React from 'react';
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2
2
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import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
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3
3
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import { LinearGenomeViewModel } from '..';
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4
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-
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|
4
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+
type LGV = LinearGenomeViewModel;
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5
5
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declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
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6
6
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model: LGV;
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7
7
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overview: Base1DViewModel;
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@@ -8,7 +8,7 @@ declare const Polygon: ({ model, overview, useOffset, }: {
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8
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overview: Base1DViewModel;
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9
9
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useOffset?: boolean | undefined;
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}) => JSX.Element | null;
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|
-
|
|
11
|
+
type LGV = LinearGenomeViewModel;
|
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12
12
|
declare const Cytobands: ({ overview, block, assembly, }: {
|
|
13
13
|
overview: Base1DViewModel;
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14
14
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assembly?: ({
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@@ -1,6 +1,6 @@
|
|
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1
1
|
import React from 'react';
|
|
2
2
|
import { LinearGenomeViewModel } from '..';
|
|
3
|
-
|
|
3
|
+
type LGV = LinearGenomeViewModel;
|
|
4
4
|
declare function RubberBand({ model, ControlComponent, }: {
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|
5
5
|
model: LGV;
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6
6
|
ControlComponent?: React.ReactElement;
|
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@@ -1,7 +1,7 @@
|
|
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1
1
|
/// <reference types="react" />
|
|
2
2
|
import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
|
|
3
3
|
import { LinearGenomeViewModel } from '..';
|
|
4
|
-
|
|
4
|
+
type LGV = LinearGenomeViewModel;
|
|
5
5
|
declare function TrackContainer({ model, track, }: {
|
|
6
6
|
model: LGV;
|
|
7
7
|
track: BaseTrackModel;
|
|
@@ -4,7 +4,8 @@ import { makeStyles } from 'tss-react/mui';
|
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|
4
4
|
import { observer } from 'mobx-react';
|
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5
5
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import { isAlive } from 'mobx-state-tree';
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6
6
|
import { getConf } from '@jbrowse/core/configuration';
|
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7
|
-
import { ResizeHandle } from '@jbrowse/core/ui';
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7
|
+
import { ResizeHandle, ErrorMessage } from '@jbrowse/core/ui';
|
|
8
|
+
import { ErrorBoundary } from 'react-error-boundary';
|
|
8
9
|
import { useDebouncedCallback } from '@jbrowse/core/util';
|
|
9
10
|
import TrackLabel from './TrackLabel';
|
|
10
11
|
const useStyles = makeStyles()({
|
|
@@ -70,6 +71,7 @@ function TrackContainer({ model, track, }) {
|
|
|
70
71
|
const trackId = getConf(track, 'trackId');
|
|
71
72
|
const ref = useRef(null);
|
|
72
73
|
const dimmed = draggingTrackId !== undefined && draggingTrackId !== display.id;
|
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74
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+
const minimized = track.minimized;
|
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const debouncedOnDragEnter = useDebouncedCallback(() => {
|
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|
if (isAlive(display) && dimmed) {
|
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moveTrack(draggingTrackId, track.id);
|
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@@ -85,15 +87,16 @@ function TrackContainer({ model, track, }) {
|
|
|
85
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|
}, [model.trackRefs, trackId]);
|
|
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|
return (React.createElement(Paper, { className: classes.root, variant: "outlined" },
|
|
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|
React.createElement(TrackContainerLabel, { model: track, view: model }),
|
|
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|
-
React.createElement(
|
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-
React.createElement("div", {
|
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-
React.createElement(
|
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-
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-
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-
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-
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-
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90
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+
React.createElement(ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => React.createElement(ErrorMessage, { error: error }) },
|
|
91
|
+
React.createElement("div", { className: classes.trackRenderingContainer, style: { height: minimized ? 20 : height }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` }, !minimized ? (React.createElement(React.Fragment, null,
|
|
92
|
+
React.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
|
|
93
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+
React.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
|
|
94
|
+
DisplayBlurb ? (React.createElement("div", { style: {
|
|
95
|
+
position: 'absolute',
|
|
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+
left: 0,
|
|
97
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+
top: display.height - 20,
|
|
98
|
+
} },
|
|
99
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+
React.createElement(DisplayBlurb, { model: display }))) : null)) : null)),
|
|
97
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|
React.createElement("div", { className: classes.overlay, style: {
|
|
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|
height: display.height,
|
|
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|
background: dimmed ? 'rgba(0, 0, 0, 0.4)' : undefined,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"TrackContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAChD,OAAO,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAEzC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;
|
|
1
|
+
{"version":3,"file":"TrackContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackContainer.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,OAAO,CAAA;AAChD,OAAO,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AAEzC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,EAAE,YAAY,EAAE,YAAY,EAAE,MAAM,kBAAkB,CAAA;AAC7D,OAAO,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAA;AACpD,OAAO,EAAE,oBAAoB,EAAE,MAAM,oBAAoB,CAAA;AAIzD,OAAO,UAAU,MAAM,cAAc,CAAA;AAErC,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,SAAS,EAAE,CAAC;KACb;IACD,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,SAAS,EAAE,YAAY;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,OAAO,EAAE;QACP,aAAa,EAAE,MAAM;QACrB,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,IAAI,EAAE,CAAC;QACP,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;KACV;IACD,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;KACV;IAED,4EAA4E;IAC5E,4DAA4D;IAC5D,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,mDAAmD;QACnD,IAAI,EAAE,CAAC,CAAC;QACR,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;KACd;IACD,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,cAAc;KACxB;IACD,iBAAiB,EAAE;QACjB,QAAQ,EAAE,UAAU;KACrB;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,MAAM,mBAAmB,GAAG,QAAQ,CAClC,CAAC,EAAE,KAAK,EAAE,IAAI,EAAwC,EAAE,EAAE;IACxD,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,UAAU,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAAA;IACnE,MAAM,UAAU,GACd,IAAI,CAAC,WAAW,KAAK,aAAa,IAAI,OAAO,CAAC,aAAa;QACzD,CAAC,CAAC,gBAAgB;QAClB,CAAC,CAAC,iBAAiB,CAAA;IAEvB,OAAO,IAAI,CAAC,WAAW,KAAK,QAAQ,CAAC,CAAC,CAAC,CACrC,oBAAC,UAAU,IAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,CAAC,UAAU,EAAE,UAAU,CAAC,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAED,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,gBAAgB,EAAE,eAAe,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;IAC5D,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,GAAG,GAAG,MAAM,CAAC,IAAI,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,eAAe,KAAK,SAAS,IAAI,eAAe,KAAK,OAAO,CAAC,EAAE,CAAA;IAC9E,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,oBAAoB,GAAG,oBAAoB,CAAC,GAAG,EAAE;QACrD,IAAI,OAAO,CAAC,OAAO,CAAC,IAAI,MAAM,EAAE;YAC9B,SAAS,CAAC,eAAe,EAAE,KAAK,CAAC,EAAE,CAAC,CAAA;SACrC;IACH,CAAC,EAAE,GAAG,CAAC,CAAA;IACP,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,OAAO,CAAA;SACvC;QACD,OAAO,GAAG,EAAE;YACV,OAAO,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QACjC,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC,CAAA;IAE9B,OAAO,CACL,oBAAC,KAAK,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,UAAU;QAChD,oBAAC,mBAAmB,IAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,GAAI;QAClD,oBAAC,aAAa,IACZ,GAAG,EAAE,KAAK,CAAC,EAAE,EACb,iBAAiB,EAAE,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,oBAAC,YAAY,IAAC,KAAK,EAAE,KAAK,GAAI;YAEhE,6BACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,EAC1C,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,GAAG,CAAC,aAAa,CAAC,SAAS,CAAC,EAClE,WAAW,EAAE,oBAAoB,iBACpB,2BAA2B,KAAK,CAAC,EAAE,IAAI,OAAO,EAAE,IAE5D,CAAC,SAAS,CAAC,CAAC,CAAC,CACZ;gBACE,6BACE,GAAG,EAAE,GAAG,EACR,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE,EAAE,SAAS,EAAE,UAAU,KAAK,CAAC,WAAW,GAAG,EAAE;oBAEpD,oBAAC,kBAAkB,IACjB,KAAK,EAAE,OAAO,EACd,kBAAkB,EAAE,gBAAgB,GACpC,CACE;gBAEL,YAAY,CAAC,CAAC,CAAC,CACd,6BACE,KAAK,EAAE;wBACL,QAAQ,EAAE,UAAU;wBACpB,IAAI,EAAE,CAAC;wBACP,GAAG,EAAE,OAAO,CAAC,MAAM,GAAG,EAAE;qBACzB;oBAED,oBAAC,YAAY,IAAC,KAAK,EAAE,OAAO,GAAI,CAC5B,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,6BACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE;gBACL,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,SAAS;aACtD,EACD,WAAW,EAAE,oBAAoB,GACjC;QACF,oBAAC,YAAY,IACX,MAAM,EAAE,OAAO,CAAC,YAAY,EAC5B,SAAS,EAAE,OAAO,CAAC,YAAY,GAC/B,CACI,CACT,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,cAAc,CAAC,CAAA"}
|
|
@@ -11,6 +11,8 @@ import { bindTrigger, bindPopover, usePopupState, } from 'material-ui-popup-stat
|
|
|
11
11
|
import MoreVertIcon from '@mui/icons-material/MoreVert';
|
|
12
12
|
import DragIcon from '@mui/icons-material/DragIndicator';
|
|
13
13
|
import CloseIcon from '@mui/icons-material/Close';
|
|
14
|
+
import MinimizeIcon from '@mui/icons-material/Minimize';
|
|
15
|
+
import AddIcon from '@mui/icons-material/Add';
|
|
14
16
|
const useStyles = makeStyles()(theme => ({
|
|
15
17
|
root: {
|
|
16
18
|
background: alpha(theme.palette.background.paper, 0.8),
|
|
@@ -46,6 +48,7 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
|
|
|
46
48
|
const view = getContainingView(track);
|
|
47
49
|
const session = getSession(track);
|
|
48
50
|
const trackConf = track.configuration;
|
|
51
|
+
const minimized = track.minimized;
|
|
49
52
|
const trackId = getConf(track, 'trackId');
|
|
50
53
|
const trackName = getTrackName(trackConf, session);
|
|
51
54
|
const popupState = usePopupState({
|
|
@@ -53,6 +56,11 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
|
|
|
53
56
|
variant: 'popover',
|
|
54
57
|
});
|
|
55
58
|
const items = [
|
|
59
|
+
{
|
|
60
|
+
label: minimized ? 'Restore track' : 'Minimize track',
|
|
61
|
+
icon: minimized ? AddIcon : MinimizeIcon,
|
|
62
|
+
onClick: () => track.setMinimized(!minimized),
|
|
63
|
+
},
|
|
56
64
|
...(((_a = session.getTrackActionMenuItems) === null || _a === void 0 ? void 0 : _a.call(session, trackConf)) || []),
|
|
57
65
|
...track.trackMenuItems(),
|
|
58
66
|
].sort((a, b) => (b.priority || 0) - (a.priority || 0));
|
|
@@ -68,7 +76,7 @@ const TrackLabel = React.forwardRef(({ track, className }, ref) => {
|
|
|
68
76
|
React.createElement(DragIcon, { className: classes.dragHandleIcon, fontSize: "small" })),
|
|
69
77
|
React.createElement(IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
|
|
70
78
|
React.createElement(CloseIcon, { fontSize: "small" })),
|
|
71
|
-
React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName),
|
|
79
|
+
React.createElement(Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName + (minimized ? ' (minimized)' : '')),
|
|
72
80
|
React.createElement(IconButton, { ...bindTrigger(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
|
|
73
81
|
React.createElement(MoreVertIcon, { fontSize: "small" })),
|
|
74
82
|
React.createElement(CascadingMenu, { ...bindPopover(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAA;AAGxD,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;
|
|
1
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+
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,OAAO,EAAE,MAAM,6BAA6B,CAAA;AACrD,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAClE,OAAO,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAA;AAGxD,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;AACjD,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,OAAO,MAAM,yBAAyB,CAAA;AAI7C,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,MAAM,UAAU,GAAG,KAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,SAAS,EAAE,OAAO,CAAC,CAAA;IAElD,MAAM,UAAU,GAAG,aAAa,CAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,KAAK,GAAG;QACZ;YACE,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,eAAe,CAAC,CAAC,CAAC,gBAAgB;YACrD,IAAI,EAAE,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,YAAY;YACxC,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,SAAS,CAAC;SAC9C;QACD,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,KAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,8BACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,KAAK,CAAC,EAAE;gBACnB,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;gBAClC,IAAI,MAAM,CAAC,UAAU,EAAE;oBACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;oBAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;oBAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;iBAClC;YACH,CAAC,EACD,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,oBAAC,QAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,oBAAC,SAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QAEb,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC,CACnC;QACb,oBAAC,UAAU,OACL,WAAW,CAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,oBAAC,YAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,oBAAC,aAAa,OACR,WAAW,CAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}
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tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
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};
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getTrack(id: string): any;
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rankSearchResults(results: BaseResult[]): BaseResult[];
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* modifies view menu action onClick to apply to all tracks of same type
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readonly trackTypeActions: Map<string, MenuItem[]>;
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} & {
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@@ -198,6 +276,9 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
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* #action
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*/
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showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
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hideTrack(trackId: string): number;
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} & {
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/**
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@@ -449,6 +530,6 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
|
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} | undefined;
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
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|
export { renderToSvg, RefNameAutocomplete, SearchBox, ZoomControls, LinearGenomeView, };
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-
export
|
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|
-
export
|
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|
+
export type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;
|
|
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|
+
export type LinearGenomeViewModel = Instance<LinearGenomeViewStateModel>;
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|
export { default as ReactComponent } from './components/LinearGenomeView';
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