npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.2.0 → 2.2.1 - Mend

@jbrowse/plugin-linear-genome-view 2.2.0 → 2.2.1

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Files changed (71) hide show

package/dist/BaseLinearDisplay/components/Tooltip.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
-declare type Coord = [number, number];
+type Coord = [number, number];
 declare const Tooltip: ({ model, clientMouseCoord, }: {
     model: BaseLinearDisplayModel;
     clientMouseCoord: Coord;

package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts CHANGED Viewed

@@ -14,7 +14,7 @@ export interface Layout {
     maxY: number;
     name: string;
 }
-declare type LayoutRecord = [number, number, number, number];
+type LayoutRecord = [number, number, number, number];
 export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     type: import("mobx-state-tree").ISimpleType<string>;
@@ -369,6 +369,6 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 }>;
-export declare type BaseLinearDisplayStateModel = typeof BaseLinearDisplay;
-export declare type BaseLinearDisplayModel = Instance<BaseLinearDisplayStateModel>;
+export type BaseLinearDisplayStateModel = typeof BaseLinearDisplay;
+export type BaseLinearDisplayModel = Instance<BaseLinearDisplayStateModel>;
 export {};

package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts CHANGED Viewed

@@ -49,8 +49,8 @@ declare const blockState: import("mobx-state-tree").IModelType<{
     beforeDestroy(): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export default blockState;
-export declare type BlockStateModel = typeof blockState;
-export declare type BlockModel = Instance<BlockStateModel>;
+export type BlockStateModel = typeof blockState;
+export type BlockModel = Instance<BlockStateModel>;
 export declare function renderBlockData(self: BlockModel, optDisplay?: AbstractDisplayModel): {
     rendererType: any;
     rpcManager: import("@jbrowse/core/rpc/RpcManager").default;

package/dist/BasicTrack/index.d.ts CHANGED Viewed

@@ -1,3 +1,3 @@
 import PluginManager from '@jbrowse/core/PluginManager';
-declare const _default: (pluginManager: PluginManager) => void;
+declare const _default: (pm: PluginManager) => void;
 export default _default;

package/dist/BasicTrack/index.js CHANGED Viewed

@@ -5,13 +5,13 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 Object.defineProperty(exports, "__esModule", { value: true });
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const configSchema_1 = __importDefault(require("./configSchema"));
-exports.default = (pluginManager) => {
-    pluginManager.addTrackType(() => {
-        const configSchema = (0, configSchema_1.default)(pluginManager);
+exports.default = (pm) => {
+    pm.addTrackType(() => {
+        const configSchema = (0, configSchema_1.default)(pm);
         return new pluggableElementTypes_1.TrackType({
             name: 'BasicTrack',
             configSchema,
-            stateModel: (0, pluggableElementTypes_1.createBaseTrackModel)(pluginManager, 'BasicTrack', configSchema),
+            stateModel: (0, pluggableElementTypes_1.createBaseTrackModel)(pm, 'BasicTrack', configSchema),
         });
     });
 };

package/dist/BasicTrack/index.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearBasicDisplay/model.d.ts CHANGED Viewed

@@ -292,6 +292,6 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     userBpPerPxLimit: number | undefined;
     userByteSizeLimit: number | undefined;
 } & import("mobx-state-tree")._NotCustomized>;
-export declare type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
-export declare type FeatureTrackModel = Instance<FeatureTrackStateModel>;
+export type FeatureTrackStateModel = ReturnType<typeof stateModelFactory>;
+export type FeatureTrackModel = Instance<FeatureTrackStateModel>;
 export default stateModelFactory;

package/dist/LinearGenomeView/components/CenterLine.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function CenterLine({ model }: {
     model: LGV;
 }): JSX.Element | null;

package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function SequenceDialog({ model, handleClose, }: {
     model: LGV;
     handleClose: () => void;

package/dist/LinearGenomeView/components/Gridlines.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function VerticalGuides({ model }: {
     model: LGV;
 }): JSX.Element;

package/dist/LinearGenomeView/components/Header.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const LinearGenomeViewHeader: ({ model }: {
     model: LGV;
 }) => JSX.Element | null;

package/dist/LinearGenomeView/components/ImportForm.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const ImportForm: ({ model }: {
     model: LGV;
 }) => JSX.Element;

package/dist/LinearGenomeView/components/ImportForm.js CHANGED Viewed

@@ -32,6 +32,7 @@ const mobx_react_1 = require("mobx-react");
 const util_1 = require("@jbrowse/core/util");
 const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
+// icons
 const Close_1 = __importDefault(require("@mui/icons-material/Close"));
 // locals
 const RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
@@ -55,7 +56,6 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
     const { assemblyNames, assemblyManager, textSearchManager } = session;
     const { rankSearchResults, isSearchDialogDisplayed, error } = model;
     const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyNames[0]);
-    const [importError, setImportError] = (0, react_1.useState)(error);
     const [option, setOption] = (0, react_1.useState)();
     const searchScope = model.searchScope(selectedAsm);
     const assembly = assemblyManager.get(selectedAsm);
@@ -63,14 +63,16 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
         ? assembly === null || assembly === void 0 ? void 0 : assembly.error
         : 'No configured assemblies';
     const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
-    const err = assemblyError || importError;
+    const displayError = assemblyError || error;
     const [value, setValue] = (0, react_1.useState)('');
     const r0 = (_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName;
     // useEffect resets to an "initial state" of displaying first region from assembly
-    // after assembly change
+    // after assembly change. needs to react to selectedAsm as well as r0 because changing
+    // assembly will run setValue('') and then r0 may not change if assembly names are the
+    // same across assemblies, but it still needs to be reset
     (0, react_1.useEffect)(() => {
         setValue(r0);
-    }, [r0]);
+    }, [r0, selectedAsm]);
     function navToOption(option) {
         const location = option.getLocation();
         const trackId = option.getTrackId();
@@ -127,7 +129,7 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
     // implementation notes:
     // having this wrapped in a form allows intuitive use of enter key to submit
     return (react_1.default.createElement("div", { className: classes.container },
-        err ? react_1.default.createElement(ui_1.ErrorMessage, { error: err }) : null,
+        displayError ? react_1.default.createElement(ui_1.ErrorMessage, { error: displayError }) : null,
         react_1.default.createElement(material_1.Container, { className: classes.importFormContainer },
             react_1.default.createElement("form", { onSubmit: event => {
                     event.preventDefault();
@@ -140,11 +142,10 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
                     react_1.default.createElement(material_1.Grid, { item: true },
                         react_1.default.createElement(material_1.FormControl, null,
                             react_1.default.createElement(ui_1.AssemblySelector, { onChange: val => {
-                                    setImportError('');
                                     setSelectedAsm(val);
                                     setValue('');
                                 }, session: session, selected: selectedAsm }))),
-                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (err ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(material_1.FormControl, null,
+                    react_1.default.createElement(material_1.Grid, { item: true }, selectedAsm ? (assemblyError ? (react_1.default.createElement(Close_1.default, { style: { color: 'red' } })) : value ? (react_1.default.createElement(material_1.FormControl, null,
                         react_1.default.createElement(RefNameAutocomplete_1.default, { fetchResults: queryString => (0, util_2.fetchResults)({
                                 queryString,
                                 assembly,

package/dist/LinearGenomeView/components/ImportForm.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/components/LinearGenomeView.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const LinearGenomeView: ({ model }: {
     model: LGV;
 }) => JSX.Element;

package/dist/LinearGenomeView/components/LinearGenomeView.js CHANGED Viewed

@@ -6,7 +6,6 @@ Object.defineProperty(exports, "__esModule", { value: true });
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mui_1 = require("tss-react/mui");
-const react_error_boundary_1 = require("react-error-boundary");
 const Icons_1 = require("@jbrowse/core/ui/Icons");
 const ui_1 = require("@jbrowse/core/ui");
 const mobx_react_1 = require("mobx-react");
@@ -40,8 +39,7 @@ const LinearGenomeView = (0, mobx_react_1.observer)(({ model }) => {
         react_1.default.createElement(MiniControlsComponent, { model: model }),
         react_1.default.createElement(TracksContainer_1.default, { model: model }, !tracks.length ? (react_1.default.createElement(material_1.Paper, { variant: "outlined", className: classes.note }, !model.hideNoTracksActive ? (react_1.default.createElement(react_1.default.Fragment, null,
             react_1.default.createElement(material_1.Typography, null, "No tracks active."),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: react_1.default.createElement(Icons_1.TrackSelector, null) }, "Open track selector"))) : (react_1.default.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (react_1.default.createElement(react_error_boundary_1.ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => react_1.default.createElement(ui_1.ErrorMessage, { error: error }) },
-            react_1.default.createElement(TrackContainer_1.default, { model: model, track: track }))))))));
+            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: model.activateTrackSelector, style: { zIndex: 1000 }, startIcon: react_1.default.createElement(Icons_1.TrackSelector, null) }, "Open track selector"))) : (react_1.default.createElement("div", { style: { height: '48px' } })))) : (tracks.map(track => (react_1.default.createElement(TrackContainer_1.default, { key: track.id, model: model, track: track })))))));
 });
 exports.default = LinearGenomeView;
 //# sourceMappingURL=LinearGenomeView.js.map

package/dist/LinearGenomeView/components/LinearGenomeView.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/components/LinearGenomeViewSvg.d.ts CHANGED Viewed

@@ -1,4 +1,4 @@
 import { LinearGenomeViewModel, ExportSvgOptions } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 export declare function renderToSvg(model: LGV, opts: ExportSvgOptions): Promise<string>;
 export {};

package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts CHANGED Viewed

@@ -1,7 +1,7 @@
 import React from 'react';
 import { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function OverviewRubberBand({ model, overview, ControlComponent, }: {
     model: LGV;
     overview: Base1DViewModel;

package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts CHANGED Viewed

@@ -8,7 +8,7 @@ declare const Polygon: ({ model, overview, useOffset, }: {
     overview: Base1DViewModel;
     useOffset?: boolean | undefined;
 }) => JSX.Element | null;
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare const Cytobands: ({ overview, block, assembly, }: {
     overview: Base1DViewModel;
     assembly?: ({

package/dist/LinearGenomeView/components/RubberBand.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function RubberBand({ model, ControlComponent, }: {
     model: LGV;
     ControlComponent?: React.ReactElement;

package/dist/LinearGenomeView/components/ScaleBar.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 interface ScaleBarProps {
     model: LGV;
     style?: React.CSSProperties;

package/dist/LinearGenomeView/components/TrackContainer.d.ts CHANGED Viewed

@@ -1,7 +1,7 @@
 /// <reference types="react" />
 import { BaseTrackModel } from '@jbrowse/core/pluggableElementTypes/models';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function TrackContainer({ model, track, }: {
     model: LGV;
     track: BaseTrackModel;

package/dist/LinearGenomeView/components/TrackContainer.js CHANGED Viewed

@@ -33,6 +33,7 @@ const mobx_react_1 = require("mobx-react");
 const mobx_state_tree_1 = require("mobx-state-tree");
 const configuration_1 = require("@jbrowse/core/configuration");
 const ui_1 = require("@jbrowse/core/ui");
+const react_error_boundary_1 = require("react-error-boundary");
 const util_1 = require("@jbrowse/core/util");
 const TrackLabel_1 = __importDefault(require("./TrackLabel"));
 const useStyles = (0, mui_1.makeStyles)()({
@@ -98,6 +99,7 @@ function TrackContainer({ model, track, }) {
     const trackId = (0, configuration_1.getConf)(track, 'trackId');
     const ref = (0, react_1.useRef)(null);
     const dimmed = draggingTrackId !== undefined && draggingTrackId !== display.id;
+    const minimized = track.minimized;
     const debouncedOnDragEnter = (0, util_1.useDebouncedCallback)(() => {
         if ((0, mobx_state_tree_1.isAlive)(display) && dimmed) {
             moveTrack(draggingTrackId, track.id);
@@ -113,15 +115,16 @@ function TrackContainer({ model, track, }) {
     }, [model.trackRefs, trackId]);
     return (react_1.default.createElement(material_1.Paper, { className: classes.root, variant: "outlined" },
         react_1.default.createElement(TrackContainerLabel, { model: track, view: model }),
-        react_1.default.createElement("div", { className: classes.trackRenderingContainer, style: { height }, onScroll: event => display.setScrollTop(event.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` },
-            react_1.default.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
-                react_1.default.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
-            DisplayBlurb ? (react_1.default.createElement("div", { style: {
-                    position: 'absolute',
-                    left: 0,
-                    top: display.height - 20,
-                } },
-                react_1.default.createElement(DisplayBlurb, { model: display }))) : null),
+        react_1.default.createElement(react_error_boundary_1.ErrorBoundary, { key: track.id, FallbackComponent: ({ error }) => react_1.default.createElement(ui_1.ErrorMessage, { error: error }) },
+            react_1.default.createElement("div", { className: classes.trackRenderingContainer, style: { height: minimized ? 20 : height }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: debouncedOnDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` }, !minimized ? (react_1.default.createElement(react_1.default.Fragment, null,
+                react_1.default.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
+                    react_1.default.createElement(RenderingComponent, { model: display, onHorizontalScroll: horizontalScroll })),
+                DisplayBlurb ? (react_1.default.createElement("div", { style: {
+                        position: 'absolute',
+                        left: 0,
+                        top: display.height - 20,
+                    } },
+                    react_1.default.createElement(DisplayBlurb, { model: display }))) : null)) : null)),
         react_1.default.createElement("div", { className: classes.overlay, style: {
                 height: display.height,
                 background: dimmed ? 'rgba(0, 0, 0, 0.4)' : undefined,

package/dist/LinearGenomeView/components/TrackContainer.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"TrackContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackContainer.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAgD;AAChD,4CAAqC;AACrC,uCAA0C;AAC1C,2CAAqC;AACrC,qDAAyC;AAEzC,+DAAqD;AACrD,yCAA6D;AAC7D,+DAAoD;AACpD,6CAAyD;AAIzD,8DAAqC;AAErC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,IAAI,EAAE;QACJ,SAAS,EAAE,CAAC;KACb;IACD,YAAY,EAAE;QACZ,MAAM,EAAE,CAAC;QACT,SAAS,EAAE,YAAY;QACvB,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;IACD,OAAO,EAAE;QACP,aAAa,EAAE,MAAM;QACrB,QAAQ,EAAE,UAAU;QACpB,GAAG,EAAE,CAAC;QACN,IAAI,EAAE,CAAC;QACP,KAAK,EAAE,MAAM;QACb,MAAM,EAAE,CAAC;KACV;IACD,UAAU,EAAE;QACV,MAAM,EAAE,CAAC;KACV;IAED,4EAA4E;IAC5E,4DAA4D;IAC5D,2BAA2B,EAAE;QAC3B,QAAQ,EAAE,UAAU;QACpB,mDAAmD;QACnD,IAAI,EAAE,CAAC,CAAC;QACR,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,MAAM;KACd;IACD,gBAAgB,EAAE;QAChB,QAAQ,EAAE,UAAU;QACpB,OAAO,EAAE,cAAc;KACxB;IACD,iBAAiB,EAAE;QACjB,QAAQ,EAAE,UAAU;KACrB;IACD,uBAAuB,EAAE;QACvB,SAAS,EAAE,MAAM;QACjB,SAAS,EAAE,QAAQ;QACnB,UAAU,EAAE,QAAQ;QACpB,QAAQ,EAAE,UAAU;QACpB,UAAU,EAAE,MAAM;QAClB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAIF,MAAM,mBAAmB,GAAG,IAAA,qBAAQ,EAClC,CAAC,EAAE,KAAK,EAAE,IAAI,EAAwC,EAAE,EAAE;IACxD,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,UAAU,EAAE,iBAAiB,EAAE,gBAAgB,EAAE,GAAG,OAAO,CAAA;IACnE,MAAM,UAAU,GACd,IAAI,CAAC,WAAW,KAAK,aAAa,IAAI,OAAO,CAAC,aAAa;QACzD,CAAC,CAAC,gBAAgB;QAClB,CAAC,CAAC,iBAAiB,CAAA;IAEvB,OAAO,IAAI,CAAC,WAAW,KAAK,QAAQ,CAAC,CAAC,CAAC,CACrC,8BAAC,oBAAU,IAAC,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,CAAC,UAAU,EAAE,UAAU,CAAC,GAAI,CACpE,CAAC,CAAC,CAAC,IAAI,CAAA;AACV,CAAC,CACF,CAAA;AAED,SAAS,cAAc,CAAC,EACtB,KAAK,EACL,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,gBAAgB,EAAE,eAAe,EAAE,SAAS,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,EAAE,MAAM,EAAE,kBAAkB,EAAE,YAAY,EAAE,GAAG,OAAO,CAAA;IAC5D,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,GAAG,GAAG,IAAA,cAAM,EAAC,IAAI,CAAC,CAAA;IACxB,MAAM,MAAM,GAAG,eAAe,KAAK,SAAS,IAAI,eAAe,KAAK,OAAO,CAAC,EAAE,CAAA;IAC9E,MAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAA;IACjC,MAAM,oBAAoB,GAAG,IAAA,2BAAoB,EAAC,GAAG,EAAE;QACrD,IAAI,IAAA,yBAAO,EAAC,OAAO,CAAC,IAAI,MAAM,EAAE;YAC9B,SAAS,CAAC,eAAe,EAAE,KAAK,CAAC,EAAE,CAAC,CAAA;SACrC;IACH,CAAC,EAAE,GAAG,CAAC,CAAA;IACP,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,GAAG,CAAC,OAAO,EAAE;YACf,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,OAAO,CAAA;SACvC;QACD,OAAO,GAAG,EAAE;YACV,OAAO,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;QACjC,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,KAAK,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC,CAAA;IAE9B,OAAO,CACL,8BAAC,gBAAK,IAAC,SAAS,EAAE,OAAO,CAAC,IAAI,EAAE,OAAO,EAAC,UAAU;QAChD,8BAAC,mBAAmB,IAAC,KAAK,EAAE,KAAK,EAAE,IAAI,EAAE,KAAK,GAAI;QAClD,8BAAC,oCAAa,IACZ,GAAG,EAAE,KAAK,CAAC,EAAE,EACb,iBAAiB,EAAE,CAAC,EAAE,KAAK,EAAE,EAAE,EAAE,CAAC,8BAAC,iBAAY,IAAC,KAAK,EAAE,KAAK,GAAI;YAEhE,uCACE,SAAS,EAAE,OAAO,CAAC,uBAAuB,EAC1C,KAAK,EAAE,EAAE,MAAM,EAAE,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,MAAM,EAAE,EAC1C,QAAQ,EAAE,GAAG,CAAC,EAAE,CAAC,OAAO,CAAC,YAAY,CAAC,GAAG,CAAC,aAAa,CAAC,SAAS,CAAC,EAClE,WAAW,EAAE,oBAAoB,iBACpB,2BAA2B,KAAK,CAAC,EAAE,IAAI,OAAO,EAAE,IAE5D,CAAC,SAAS,CAAC,CAAC,CAAC,CACZ;gBACE,uCACE,GAAG,EAAE,GAAG,EACR,SAAS,EAAE,OAAO,CAAC,2BAA2B,EAC9C,KAAK,EAAE,EAAE,SAAS,EAAE,UAAU,KAAK,CAAC,WAAW,GAAG,EAAE;oBAEpD,8BAAC,kBAAkB,IACjB,KAAK,EAAE,OAAO,EACd,kBAAkB,EAAE,gBAAgB,GACpC,CACE;gBAEL,YAAY,CAAC,CAAC,CAAC,CACd,uCACE,KAAK,EAAE;wBACL,QAAQ,EAAE,UAAU;wBACpB,IAAI,EAAE,CAAC;wBACP,GAAG,EAAE,OAAO,CAAC,MAAM,GAAG,EAAE;qBACzB;oBAED,8BAAC,YAAY,IAAC,KAAK,EAAE,OAAO,GAAI,CAC5B,CACP,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAC,CAAC,CAAC,IAAI,CACJ,CACQ;QAChB,uCACE,SAAS,EAAE,OAAO,CAAC,OAAO,EAC1B,KAAK,EAAE;gBACL,MAAM,EAAE,OAAO,CAAC,MAAM;gBACtB,UAAU,EAAE,MAAM,CAAC,CAAC,CAAC,oBAAoB,CAAC,CAAC,CAAC,SAAS;aACtD,EACD,WAAW,EAAE,oBAAoB,GACjC;QACF,8BAAC,iBAAY,IACX,MAAM,EAAE,OAAO,CAAC,YAAY,EAC5B,SAAS,EAAE,OAAO,CAAC,YAAY,GAC/B,CACI,CACT,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,cAAc,CAAC,CAAA"}

package/dist/LinearGenomeView/components/TrackLabel.js CHANGED Viewed

@@ -16,6 +16,8 @@ const hooks_1 = require("material-ui-popup-state/hooks");
 const MoreVert_1 = __importDefault(require("@mui/icons-material/MoreVert"));
 const DragIndicator_1 = __importDefault(require("@mui/icons-material/DragIndicator"));
 const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const Minimize_1 = __importDefault(require("@mui/icons-material/Minimize"));
+const Add_1 = __importDefault(require("@mui/icons-material/Add"));
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     root: {
         background: (0, material_1.alpha)(theme.palette.background.paper, 0.8),
@@ -51,6 +53,7 @@ const TrackLabel = react_1.default.forwardRef(({ track, className }, ref) => {
     const view = (0, util_1.getContainingView)(track);
     const session = (0, util_1.getSession)(track);
     const trackConf = track.configuration;
+    const minimized = track.minimized;
     const trackId = (0, configuration_1.getConf)(track, 'trackId');
     const trackName = (0, tracks_1.getTrackName)(trackConf, session);
     const popupState = (0, hooks_1.usePopupState)({
@@ -58,6 +61,11 @@ const TrackLabel = react_1.default.forwardRef(({ track, className }, ref) => {
         variant: 'popover',
     });
     const items = [
+        {
+            label: minimized ? 'Restore track' : 'Minimize track',
+            icon: minimized ? Add_1.default : Minimize_1.default,
+            onClick: () => track.setMinimized(!minimized),
+        },
         ...(((_a = session.getTrackActionMenuItems) === null || _a === void 0 ? void 0 : _a.call(session, trackConf)) || []),
         ...track.trackMenuItems(),
     ].sort((a, b) => (b.priority || 0) - (a.priority || 0));
@@ -73,7 +81,7 @@ const TrackLabel = react_1.default.forwardRef(({ track, className }, ref) => {
             react_1.default.createElement(DragIndicator_1.default, { className: classes.dragHandleIcon, fontSize: "small" })),
         react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
             react_1.default.createElement(Close_1.default, { fontSize: "small" })),
-        react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName),
+        react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName + (minimized ? ' (minimized)' : '')),
         react_1.default.createElement(material_1.IconButton, { ...(0, hooks_1.bindTrigger)(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
             react_1.default.createElement(MoreVert_1.default, { fontSize: "small" })),
         react_1.default.createElement(CascadingMenu_1.default, { ...(0, hooks_1.bindPopover)(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));

package/dist/LinearGenomeView/components/TrackLabel.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/LinearGenomeView/components/TracksContainer.d.ts CHANGED Viewed

@@ -1,6 +1,6 @@
 import React from 'react';
 import { LinearGenomeViewModel } from '..';
-declare type LGV = LinearGenomeViewModel;
+type LGV = LinearGenomeViewModel;
 declare function TracksContainer({ children, model, }: {
     children: React.ReactNode;
     model: LGV;

package/dist/LinearGenomeView/index.d.ts CHANGED Viewed

@@ -45,9 +45,10 @@ export declare const WIDGET_HEIGHT = 32;
 export declare function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
     displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
+    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
 } & {
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
+    type: import("mobx-state-tree").IType<string | undefined, string, string>;
     offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
@@ -76,6 +77,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
 } & {
     setDisplayName(name: string): void;
     setWidth(newWidth: number): void;
+    setMinimized(flag: boolean): void;
 } & {
     volatileWidth: number | undefined;
     minimumBlockWidth: number;
@@ -107,34 +109,110 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
      */
     readonly assemblyNames: string[];
 } & {
+    /**
+     * #method
+     */
     MiniControlsComponent(): React.FC<any>;
+    /**
+     * #method
+     */
     HeaderComponent(): React.FC<any>;
+    /**
+     * #getter
+     */
     readonly assemblyErrors: string;
+    /**
+     * #getter
+     */
     readonly assembliesInitialized: boolean;
+    /**
+     * #getter
+     */
     readonly initialized: boolean;
+    /**
+     * #getter
+     */
     readonly hasDisplayedRegions: boolean;
+    /**
+     * #getter
+     */
     readonly isSearchDialogDisplayed: boolean;
+    /**
+     * #getter
+     */
     readonly scaleBarHeight: number;
+    /**
+     * #getter
+     */
     readonly headerHeight: number;
+    /**
+     * #getter
+     */
     readonly trackHeights: any;
+    /**
+     * #getter
+     */
     readonly trackHeightsWithResizeHandles: any;
+    /**
+     * #getter
+     */
     readonly height: any;
+    /**
+     * #getter
+     */
     readonly totalBp: number;
+    /**
+     * #getter
+     */
     readonly maxBpPerPx: number;
+    /**
+     * #getter
+     */
     readonly minBpPerPx: number;
+    /**
+     * #getter
+     */
     readonly error: string | Error;
+    /**
+     * #getter
+     */
     readonly maxOffset: number;
+    /**
+     * #getter
+     */
     readonly minOffset: number;
+    /**
+     * #getter
+     */
     readonly displayedRegionsTotalPx: number;
+    /**
+     * #method
+     */
     renderProps(): any;
+    /**
+     * #method
+     */
     searchScope(assemblyName: string): {
         assemblyName: string;
         includeAggregateIndexes: boolean;
         tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
     };
+    /**
+     * #method
+     */
     getTrack(id: string): any;
+    /**
+     * #method
+     */
     rankSearchResults(results: BaseResult[]): BaseResult[];
+    /**
+     * #method
+     * modifies view menu action onClick to apply to all tracks of same type
+     */
     rewriteOnClicks(trackType: string, viewMenuActions: MenuItem[]): void;
+    /**
+     * #getter
+     */
     readonly trackTypeActions: Map<string, MenuItem[]>;
 } & {
     /**
@@ -198,6 +276,9 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
      * #action
      */
     showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
+    /**
+     * #action
+     */
     hideTrack(trackId: string): number;
 } & {
     /**
@@ -449,6 +530,6 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     } | undefined;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export { renderToSvg, RefNameAutocomplete, SearchBox, ZoomControls, LinearGenomeView, };
-export declare type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;
-export declare type LinearGenomeViewModel = Instance<LinearGenomeViewStateModel>;
+export type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;
+export type LinearGenomeViewModel = Instance<LinearGenomeViewStateModel>;
 export { default as ReactComponent } from './components/LinearGenomeView';