@jbrowse/plugin-linear-genome-view 2.18.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (294) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -2
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +17 -44
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +3 -4
  4. package/dist/BaseLinearDisplay/components/Block.js +4 -7
  5. package/dist/BaseLinearDisplay/components/BlockError.d.ts +1 -2
  6. package/dist/BaseLinearDisplay/components/BlockError.js +9 -15
  7. package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +1 -2
  8. package/dist/BaseLinearDisplay/components/BlockMsg.js +3 -8
  9. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -3
  10. package/dist/BaseLinearDisplay/components/LinearBlocks.js +21 -27
  11. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +1 -2
  12. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +23 -14
  13. package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -3
  14. package/dist/BaseLinearDisplay/components/TooLargeMessage.js +11 -7
  15. package/dist/BaseLinearDisplay/components/Tooltip.d.ts +7 -4
  16. package/dist/BaseLinearDisplay/components/Tooltip.js +5 -5
  17. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +7 -7
  18. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +17 -7
  19. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +1 -2
  20. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +2 -2
  21. package/dist/BaseLinearDisplay/models/renderSvg.d.ts +2 -3
  22. package/dist/BaseLinearDisplay/models/renderSvg.js +26 -26
  23. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
  24. package/dist/LinearBareDisplay/model.d.ts +6 -6
  25. package/dist/LinearBasicDisplay/components/AddFiltersDialog.d.ts +1 -2
  26. package/dist/LinearBasicDisplay/components/AddFiltersDialog.js +16 -57
  27. package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +1 -2
  28. package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.js +10 -39
  29. package/dist/LinearBasicDisplay/model.d.ts +6 -6
  30. package/dist/LinearBasicDisplay/model.js +17 -7
  31. package/dist/LinearGenomeView/components/CenterLine.d.ts +1 -2
  32. package/dist/LinearGenomeView/components/CenterLine.js +7 -33
  33. package/dist/LinearGenomeView/components/Cytobands.d.ts +1 -2
  34. package/dist/LinearGenomeView/components/Cytobands.js +28 -31
  35. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -3
  36. package/dist/LinearGenomeView/components/ExportSvgDialog.js +34 -72
  37. package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +1 -2
  38. package/dist/LinearGenomeView/components/GetSequenceDialog.js +27 -62
  39. package/dist/LinearGenomeView/components/Gridlines.d.ts +1 -2
  40. package/dist/LinearGenomeView/components/Gridlines.js +23 -28
  41. package/dist/LinearGenomeView/components/Header.d.ts +3 -5
  42. package/dist/LinearGenomeView/components/Header.js +10 -61
  43. package/dist/LinearGenomeView/components/HeaderPanControls.d.ts +6 -0
  44. package/dist/LinearGenomeView/components/HeaderPanControls.js +30 -0
  45. package/dist/LinearGenomeView/components/HeaderRegionWidth.d.ts +5 -0
  46. package/dist/LinearGenomeView/components/HeaderRegionWidth.js +21 -0
  47. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +5 -0
  48. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.js +19 -0
  49. package/dist/LinearGenomeView/components/HeaderZoomControls.d.ts +5 -0
  50. package/dist/LinearGenomeView/components/HeaderZoomControls.js +103 -0
  51. package/dist/LinearGenomeView/components/Highlight.d.ts +9 -4
  52. package/dist/LinearGenomeView/components/Highlight.js +32 -58
  53. package/dist/LinearGenomeView/components/ImportForm.d.ts +1 -2
  54. package/dist/LinearGenomeView/components/ImportForm.js +31 -67
  55. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +1 -2
  56. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +2 -2
  57. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +1 -2
  58. package/dist/LinearGenomeView/components/LinearGenomeView.js +24 -17
  59. package/dist/LinearGenomeView/components/MiniControls.d.ts +1 -2
  60. package/dist/LinearGenomeView/components/MiniControls.js +6 -13
  61. package/dist/LinearGenomeView/components/NoTracksActiveButton.d.ts +1 -2
  62. package/dist/LinearGenomeView/components/NoTracksActiveButton.js +2 -7
  63. package/dist/LinearGenomeView/components/OverviewHighlight.d.ts +1 -2
  64. package/dist/LinearGenomeView/components/OverviewHighlight.js +3 -6
  65. package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +1 -2
  66. package/dist/LinearGenomeView/components/OverviewRubberband.js +6 -33
  67. package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +1 -2
  68. package/dist/LinearGenomeView/components/OverviewScalebar.js +30 -64
  69. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +1 -2
  70. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.js +2 -5
  71. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +1 -2
  72. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.js +3 -6
  73. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +1 -2
  74. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +3 -3
  75. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +1 -2
  76. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +25 -22
  77. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +1 -2
  78. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +4 -43
  79. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -2
  80. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +21 -10
  81. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +6 -0
  82. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.js +30 -0
  83. package/dist/LinearGenomeView/components/Rubberband.d.ts +1 -2
  84. package/dist/LinearGenomeView/components/Rubberband.js +7 -32
  85. package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +1 -2
  86. package/dist/LinearGenomeView/components/RubberbandSpan.js +16 -34
  87. package/dist/LinearGenomeView/components/Scalebar.d.ts +1 -1
  88. package/dist/LinearGenomeView/components/Scalebar.js +10 -13
  89. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -2
  90. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.js +17 -17
  91. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +1 -2
  92. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.js +9 -12
  93. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -2
  94. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.js +12 -19
  95. package/dist/LinearGenomeView/components/SearchBox.d.ts +1 -2
  96. package/dist/LinearGenomeView/components/SearchBox.js +2 -2
  97. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -2
  98. package/dist/LinearGenomeView/components/SearchResultsDialog.js +4 -14
  99. package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +1 -2
  100. package/dist/LinearGenomeView/components/SearchResultsTable.js +15 -31
  101. package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +1 -2
  102. package/dist/LinearGenomeView/components/SequenceSearchDialog.js +39 -72
  103. package/dist/LinearGenomeView/components/TrackContainer.d.ts +1 -2
  104. package/dist/LinearGenomeView/components/TrackContainer.js +10 -36
  105. package/dist/LinearGenomeView/components/TrackLabel.d.ts +1 -2
  106. package/dist/LinearGenomeView/components/TrackLabel.js +10 -78
  107. package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +1 -2
  108. package/dist/LinearGenomeView/components/TrackLabelContainer.js +2 -2
  109. package/dist/LinearGenomeView/components/TrackLabelDragHandle.d.ts +1 -2
  110. package/dist/LinearGenomeView/components/TrackLabelDragHandle.js +3 -4
  111. package/dist/LinearGenomeView/components/TrackLabelMenu.d.ts +5 -0
  112. package/dist/LinearGenomeView/components/TrackLabelMenu.js +79 -0
  113. package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
  114. package/dist/LinearGenomeView/components/TrackRenderingContainer.js +10 -37
  115. package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -2
  116. package/dist/LinearGenomeView/components/TracksContainer.js +33 -27
  117. package/dist/LinearGenomeView/components/VerticalGuide.d.ts +1 -2
  118. package/dist/LinearGenomeView/components/VerticalGuide.js +3 -7
  119. package/dist/LinearGenomeView/components/useRangeSelect.d.ts +1 -1
  120. package/dist/LinearGenomeView/components/useWheelScroll.d.ts +1 -1
  121. package/dist/LinearGenomeView/components/useWheelScroll.js +1 -1
  122. package/dist/LinearGenomeView/index.js +17 -7
  123. package/dist/LinearGenomeView/model.d.ts +1 -39
  124. package/dist/LinearGenomeView/model.js +28 -31
  125. package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +1 -2
  126. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +2 -5
  127. package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +1 -2
  128. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +2 -12
  129. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +2 -1
  130. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +2 -12
  131. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +1 -2
  132. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +2 -5
  133. package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +1 -2
  134. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +17 -29
  135. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +1 -2
  136. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +2 -9
  137. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +1 -2
  138. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +2 -5
  139. package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +1 -2
  140. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +18 -15
  141. package/dist/LinearGenomeView/types.d.ts +38 -0
  142. package/dist/LinearGenomeView/types.js +2 -0
  143. package/dist/LinearGenomeView/util.d.ts +3 -1
  144. package/dist/LinearGenomeView/util.js +16 -0
  145. package/dist/index.d.ts +10 -10
  146. package/dist/index.js +19 -8
  147. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -2
  148. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +17 -21
  149. package/esm/BaseLinearDisplay/components/Block.d.ts +3 -4
  150. package/esm/BaseLinearDisplay/components/Block.js +4 -4
  151. package/esm/BaseLinearDisplay/components/BlockError.d.ts +1 -2
  152. package/esm/BaseLinearDisplay/components/BlockError.js +9 -15
  153. package/esm/BaseLinearDisplay/components/BlockMsg.d.ts +1 -2
  154. package/esm/BaseLinearDisplay/components/BlockMsg.js +3 -5
  155. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -3
  156. package/esm/BaseLinearDisplay/components/LinearBlocks.js +21 -24
  157. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +1 -2
  158. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +6 -7
  159. package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -3
  160. package/esm/BaseLinearDisplay/components/TooLargeMessage.js +11 -7
  161. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +7 -4
  162. package/esm/BaseLinearDisplay/components/Tooltip.js +5 -5
  163. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +7 -7
  164. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +1 -2
  165. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +2 -2
  166. package/esm/BaseLinearDisplay/models/renderSvg.d.ts +2 -3
  167. package/esm/BaseLinearDisplay/models/renderSvg.js +9 -16
  168. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
  169. package/esm/LinearBareDisplay/model.d.ts +6 -6
  170. package/esm/LinearBasicDisplay/components/AddFiltersDialog.d.ts +1 -2
  171. package/esm/LinearBasicDisplay/components/AddFiltersDialog.js +16 -34
  172. package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +1 -2
  173. package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.js +10 -16
  174. package/esm/LinearBasicDisplay/model.d.ts +6 -6
  175. package/esm/LinearGenomeView/components/CenterLine.d.ts +1 -2
  176. package/esm/LinearGenomeView/components/CenterLine.js +7 -10
  177. package/esm/LinearGenomeView/components/Cytobands.d.ts +1 -2
  178. package/esm/LinearGenomeView/components/Cytobands.js +28 -28
  179. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -3
  180. package/esm/LinearGenomeView/components/ExportSvgDialog.js +34 -49
  181. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +1 -2
  182. package/esm/LinearGenomeView/components/GetSequenceDialog.js +27 -39
  183. package/esm/LinearGenomeView/components/Gridlines.d.ts +1 -2
  184. package/esm/LinearGenomeView/components/Gridlines.js +23 -25
  185. package/esm/LinearGenomeView/components/Header.d.ts +3 -5
  186. package/esm/LinearGenomeView/components/Header.js +11 -62
  187. package/esm/LinearGenomeView/components/HeaderPanControls.d.ts +6 -0
  188. package/esm/LinearGenomeView/components/HeaderPanControls.js +24 -0
  189. package/esm/LinearGenomeView/components/HeaderRegionWidth.d.ts +5 -0
  190. package/esm/LinearGenomeView/components/HeaderRegionWidth.js +19 -0
  191. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +5 -0
  192. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +17 -0
  193. package/esm/LinearGenomeView/components/HeaderZoomControls.d.ts +5 -0
  194. package/esm/LinearGenomeView/components/HeaderZoomControls.js +65 -0
  195. package/esm/LinearGenomeView/components/Highlight.d.ts +9 -4
  196. package/esm/LinearGenomeView/components/Highlight.js +32 -35
  197. package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -2
  198. package/esm/LinearGenomeView/components/ImportForm.js +32 -45
  199. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +1 -2
  200. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +2 -2
  201. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +1 -2
  202. package/esm/LinearGenomeView/components/LinearGenomeView.js +7 -10
  203. package/esm/LinearGenomeView/components/MiniControls.d.ts +1 -2
  204. package/esm/LinearGenomeView/components/MiniControls.js +6 -13
  205. package/esm/LinearGenomeView/components/NoTracksActiveButton.d.ts +1 -2
  206. package/esm/LinearGenomeView/components/NoTracksActiveButton.js +2 -4
  207. package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +1 -2
  208. package/esm/LinearGenomeView/components/OverviewHighlight.js +3 -3
  209. package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +1 -2
  210. package/esm/LinearGenomeView/components/OverviewRubberband.js +6 -10
  211. package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +1 -2
  212. package/esm/LinearGenomeView/components/OverviewScalebar.js +30 -41
  213. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +1 -2
  214. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +2 -2
  215. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +1 -2
  216. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +3 -3
  217. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +1 -2
  218. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +3 -3
  219. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +1 -2
  220. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +8 -15
  221. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +1 -2
  222. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +4 -40
  223. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -2
  224. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +4 -3
  225. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +6 -0
  226. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +28 -0
  227. package/esm/LinearGenomeView/components/Rubberband.d.ts +1 -2
  228. package/esm/LinearGenomeView/components/Rubberband.js +7 -9
  229. package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +1 -2
  230. package/esm/LinearGenomeView/components/RubberbandSpan.js +16 -11
  231. package/esm/LinearGenomeView/components/Scalebar.d.ts +1 -1
  232. package/esm/LinearGenomeView/components/Scalebar.js +10 -13
  233. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -2
  234. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +17 -17
  235. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +1 -2
  236. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.js +9 -9
  237. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -2
  238. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +12 -16
  239. package/esm/LinearGenomeView/components/SearchBox.d.ts +1 -2
  240. package/esm/LinearGenomeView/components/SearchBox.js +2 -2
  241. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -2
  242. package/esm/LinearGenomeView/components/SearchResultsDialog.js +4 -14
  243. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +1 -2
  244. package/esm/LinearGenomeView/components/SearchResultsTable.js +15 -28
  245. package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts +1 -2
  246. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +39 -49
  247. package/esm/LinearGenomeView/components/TrackContainer.d.ts +1 -2
  248. package/esm/LinearGenomeView/components/TrackContainer.js +10 -13
  249. package/esm/LinearGenomeView/components/TrackLabel.d.ts +1 -2
  250. package/esm/LinearGenomeView/components/TrackLabel.js +10 -78
  251. package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts +1 -2
  252. package/esm/LinearGenomeView/components/TrackLabelContainer.js +2 -2
  253. package/esm/LinearGenomeView/components/TrackLabelDragHandle.d.ts +1 -2
  254. package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +3 -4
  255. package/esm/LinearGenomeView/components/TrackLabelMenu.d.ts +5 -0
  256. package/esm/LinearGenomeView/components/TrackLabelMenu.js +74 -0
  257. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
  258. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +10 -14
  259. package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -2
  260. package/esm/LinearGenomeView/components/TracksContainer.js +16 -20
  261. package/esm/LinearGenomeView/components/VerticalGuide.d.ts +1 -2
  262. package/esm/LinearGenomeView/components/VerticalGuide.js +3 -4
  263. package/esm/LinearGenomeView/components/useRangeSelect.d.ts +1 -1
  264. package/esm/LinearGenomeView/components/useWheelScroll.d.ts +1 -1
  265. package/esm/LinearGenomeView/components/useWheelScroll.js +1 -1
  266. package/esm/LinearGenomeView/model.d.ts +1 -39
  267. package/esm/LinearGenomeView/model.js +10 -22
  268. package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +1 -2
  269. package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +2 -2
  270. package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +1 -2
  271. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +2 -12
  272. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +2 -1
  273. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +2 -12
  274. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +1 -2
  275. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +2 -2
  276. package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +1 -2
  277. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +17 -29
  278. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +1 -2
  279. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +2 -6
  280. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +1 -2
  281. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +2 -2
  282. package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +1 -2
  283. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +18 -15
  284. package/esm/LinearGenomeView/types.d.ts +38 -0
  285. package/esm/LinearGenomeView/types.js +1 -0
  286. package/esm/LinearGenomeView/util.d.ts +3 -1
  287. package/esm/LinearGenomeView/util.js +16 -1
  288. package/esm/index.d.ts +10 -10
  289. package/esm/index.js +2 -1
  290. package/package.json +2 -2
  291. package/dist/LinearGenomeView/components/ZoomControls.d.ts +0 -6
  292. package/dist/LinearGenomeView/components/ZoomControls.js +0 -66
  293. package/esm/LinearGenomeView/components/ZoomControls.d.ts +0 -6
  294. package/esm/LinearGenomeView/components/ZoomControls.js +0 -38
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- };
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+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
28
35
  Object.defineProperty(exports, "__esModule", { value: true });
29
36
  exports.renderBaseLinearDisplaySvg = renderBaseLinearDisplaySvg;
30
- const react_1 = __importDefault(require("react"));
37
+ const jsx_runtime_1 = require("react/jsx-runtime");
38
+ const react_1 = require("react");
31
39
  const util_1 = require("@jbrowse/core/util");
32
40
  const serverSideRenderedBlock_1 = __importStar(require("./serverSideRenderedBlock"));
33
41
  const util_2 = require("./util");
@@ -47,9 +55,7 @@ async function renderBaseLinearDisplaySvg(self, opts) {
47
55
  return [
48
56
  block,
49
57
  {
50
- reactElement: (react_1.default.createElement(react_1.default.Fragment, null,
51
- react_1.default.createElement("rect", { x: 0, y: 0, width: width, height: 20, fill: "#aaa" }),
52
- react_1.default.createElement("text", { x: 0, y: 15 }, cannotBeRenderedReason))),
58
+ reactElement: ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("rect", { x: 0, y: 0, width: width, height: 20, fill: "#aaa" }), (0, jsx_runtime_1.jsx)("text", { x: 0, y: 15, children: cannotBeRenderedReason })] })),
53
59
  },
54
60
  ];
55
61
  }
@@ -65,16 +71,10 @@ async function renderBaseLinearDisplaySvg(self, opts) {
65
71
  }),
66
72
  ];
67
73
  }));
68
- return (react_1.default.createElement(react_1.default.Fragment, null, renderings.map(([block, rendering], index) => {
69
- const { offsetPx, widthPx } = block;
70
- const offset = offsetPx - viewOffsetPx;
71
- const clipid = (0, util_2.getId)(id, index);
72
- return (react_1.default.createElement(react_1.default.Fragment, { key: `frag-${index}` },
73
- react_1.default.createElement("defs", null,
74
- react_1.default.createElement("clipPath", { id: clipid },
75
- react_1.default.createElement("rect", { x: 0, y: 0, width: widthPx, height: overrideHeight || height }))),
76
- react_1.default.createElement("g", { transform: `translate(${offset} 0)` },
77
- react_1.default.createElement("g", { clipPath: `url(#${clipid})` },
78
- react_1.default.createElement(util_1.ReactRendering, { rendering: rendering })))));
79
- })));
74
+ return ((0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: renderings.map(([block, rendering], index) => {
75
+ const { offsetPx, widthPx } = block;
76
+ const offset = offsetPx - viewOffsetPx;
77
+ const clipid = (0, util_2.getId)(id, index);
78
+ return ((0, jsx_runtime_1.jsxs)(react_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("defs", { children: (0, jsx_runtime_1.jsx)("clipPath", { id: clipid, children: (0, jsx_runtime_1.jsx)("rect", { x: 0, y: 0, width: widthPx, height: overrideHeight || height }) }) }), (0, jsx_runtime_1.jsx)("g", { transform: `translate(${offset} 0)`, children: (0, jsx_runtime_1.jsx)("g", { clipPath: `url(#${clipid})`, children: (0, jsx_runtime_1.jsx)(util_1.ReactRendering, { rendering: rendering }) }) })] }, `frag-${index}`));
79
+ }) }));
80
80
  }
@@ -34,7 +34,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
34
34
  status?: string;
35
35
  reactElement?: React.ReactElement;
36
36
  };
37
- }) => React.JSX.Element | undefined;
37
+ }) => import("react/jsx-runtime").JSX.Element | undefined;
38
38
  renderProps: any;
39
39
  } & {
40
40
  doReload(): void;
@@ -34,7 +34,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
34
34
  status?: string;
35
35
  reactElement?: React.ReactElement;
36
36
  };
37
- }) => import("react").JSX.Element | undefined;
37
+ }) => import("react/jsx-runtime").JSX.Element | undefined;
38
38
  renderProps: any;
39
39
  } & {
40
40
  doReload(): void;
@@ -169,13 +169,13 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
169
169
  } & {
170
170
  readonly statsReadyAndRegionNotTooLarge: boolean;
171
171
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
172
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
172
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
173
173
  } & {
174
174
  featureIdUnderMouse: undefined | string;
175
175
  contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
176
176
  } & {
177
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
178
- readonly blockType: "dynamicBlocks" | "staticBlocks";
177
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
178
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
179
179
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
180
180
  } & {
181
181
  readonly renderDelay: number;
@@ -202,7 +202,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
202
202
  contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
203
203
  renderProps(): any;
204
204
  } & {
205
- renderSvg(opts: import("../BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
205
+ renderSvg(opts: import("../BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
206
206
  afterAttach(): void;
207
207
  } & {
208
208
  readonly rendererConfig: {
@@ -256,7 +256,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
256
256
  status?: string;
257
257
  reactElement?: React.ReactElement;
258
258
  };
259
- }) => import("react").JSX.Element | undefined;
259
+ }) => import("react/jsx-runtime").JSX.Element | undefined;
260
260
  renderProps: any;
261
261
  } & {
262
262
  doReload(): void;
@@ -1,4 +1,3 @@
1
- import React from 'react';
2
1
  declare const AddFiltersDialog: ({ model, handleClose, }: {
3
2
  model: {
4
3
  jexlFilters?: string[];
@@ -6,5 +5,5 @@ declare const AddFiltersDialog: ({ model, handleClose, }: {
6
5
  setJexlFilters: (arg?: string[]) => void;
7
6
  };
8
7
  handleClose: () => void;
9
- }) => React.JSX.Element;
8
+ }) => import("react/jsx-runtime").JSX.Element;
10
9
  export default AddFiltersDialog;
@@ -1,29 +1,7 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  Object.defineProperty(exports, "__esModule", { value: true });
26
- const react_1 = __importStar(require("react"));
3
+ const jsx_runtime_1 = require("react/jsx-runtime");
4
+ const react_1 = require("react");
27
5
  const ui_1 = require("@jbrowse/core/ui");
28
6
  const jexlStrings_1 = require("@jbrowse/core/util/jexlStrings");
29
7
  const material_1 = require("@mui/material");
@@ -65,38 +43,19 @@ const AddFiltersDialog = (0, mobx_react_1.observer)(function ({ model, handleClo
65
43
  setError(e);
66
44
  }
67
45
  }, [data]);
68
- return (react_1.default.createElement(ui_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Add track filters" },
69
- react_1.default.createElement(material_1.DialogContent, null,
70
- react_1.default.createElement("div", null,
71
- "Add filters, in jexl format, one per line, starting with the string jexl:. Examples:",
72
- ' ',
73
- react_1.default.createElement("ul", null,
74
- react_1.default.createElement("li", null,
75
- react_1.default.createElement("code", null, "jexl:get(feature,'name')=='BRCA1'"),
76
- " - show only feature where the name attribute is BRCA1"),
77
- react_1.default.createElement("li", null,
78
- react_1.default.createElement("code", null, "jexl:get(feature,'type')=='gene'"),
79
- " - show only gene type features in a GFF that has many other feature types"),
80
- react_1.default.createElement("li", null,
81
- react_1.default.createElement("code", null, "jexl:get(feature,'score') > 400"),
82
- " - show only features that have a score greater than 400"))),
83
- error ? react_1.default.createElement("p", { className: classes.error }, `${error}`) : null,
84
- react_1.default.createElement(material_1.TextField, { variant: "outlined", multiline: true, minRows: 5, maxRows: 10, className: classes.dialogContent, fullWidth: true, value: data, onChange: event => {
85
- setData(event.target.value);
86
- }, slotProps: {
87
- input: {
88
- classes: {
89
- input: classes.textAreaFont,
90
- },
91
- },
92
- } })),
93
- react_1.default.createElement(material_1.DialogActions, null,
94
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !!error, onClick: () => {
95
- model.setJexlFilters(data.split('\n'));
96
- handleClose();
97
- } }, "Submit"),
98
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
99
- handleClose();
100
- } }, "Cancel"))));
46
+ return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { maxWidth: "xl", open: true, onClose: handleClose, title: "Add track filters", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsxs)("div", { children: ["Add filters, in jexl format, one per line, starting with the string jexl:. Examples:", ' ', (0, jsx_runtime_1.jsxs)("ul", { children: [(0, jsx_runtime_1.jsxs)("li", { children: [(0, jsx_runtime_1.jsx)("code", { children: "jexl:get(feature,'name')=='BRCA1'" }), " - show only feature where the name attribute is BRCA1"] }), (0, jsx_runtime_1.jsxs)("li", { children: [(0, jsx_runtime_1.jsx)("code", { children: "jexl:get(feature,'type')=='gene'" }), " - show only gene type features in a GFF that has many other feature types"] }), (0, jsx_runtime_1.jsxs)("li", { children: [(0, jsx_runtime_1.jsx)("code", { children: "jexl:get(feature,'score') > 400" }), " - show only features that have a score greater than 400"] })] })] }), error ? (0, jsx_runtime_1.jsx)("p", { className: classes.error, children: `${error}` }) : null, (0, jsx_runtime_1.jsx)(material_1.TextField, { variant: "outlined", multiline: true, minRows: 5, maxRows: 10, className: classes.dialogContent, fullWidth: true, value: data, onChange: event => {
47
+ setData(event.target.value);
48
+ }, slotProps: {
49
+ input: {
50
+ classes: {
51
+ input: classes.textAreaFont,
52
+ },
53
+ },
54
+ } })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !!error, onClick: () => {
55
+ model.setJexlFilters(data.split('\n'));
56
+ handleClose();
57
+ }, children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
58
+ handleClose();
59
+ }, children: "Cancel" })] })] }));
101
60
  });
102
61
  exports.default = AddFiltersDialog;
@@ -1,9 +1,8 @@
1
- import React from 'react';
2
1
  declare const SetMaxHeightDialog: ({ model, handleClose, }: {
3
2
  model: {
4
3
  maxHeight?: number;
5
4
  setMaxHeight: (arg?: number) => void;
6
5
  };
7
6
  handleClose: () => void;
8
- }) => React.JSX.Element;
7
+ }) => import("react/jsx-runtime").JSX.Element;
9
8
  export default SetMaxHeightDialog;
@@ -1,29 +1,7 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  Object.defineProperty(exports, "__esModule", { value: true });
26
- const react_1 = __importStar(require("react"));
3
+ const jsx_runtime_1 = require("react/jsx-runtime");
4
+ const react_1 = require("react");
27
5
  const ui_1 = require("@jbrowse/core/ui");
28
6
  const material_1 = require("@mui/material");
29
7
  const mobx_react_1 = require("mobx-react");
@@ -38,20 +16,13 @@ const SetMaxHeightDialog = (0, mobx_react_1.observer)(function ({ model, handleC
38
16
  const { maxHeight = '' } = model;
39
17
  const [max, setMax] = (0, react_1.useState)(`${maxHeight}`);
40
18
  const ok = max !== '' && !Number.isNaN(+max);
41
- return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set max height" },
42
- react_1.default.createElement(material_1.DialogContent, { className: classes.root },
43
- react_1.default.createElement(material_1.Typography, null, "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\""),
44
- react_1.default.createElement(material_1.TextField, { value: max, onChange: event => {
45
- setMax(event.target.value);
46
- }, placeholder: "Enter max score" }),
47
- !ok ? react_1.default.createElement("div", { style: { color: 'red' } }, "Invalid number") : null),
48
- react_1.default.createElement(material_1.DialogActions, null,
49
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !ok, onClick: () => {
50
- model.setMaxHeight(+max);
51
- handleClose();
52
- } }, "Submit"),
53
- react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
54
- handleClose();
55
- } }, "Cancel"))));
19
+ return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Set max height", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.root, children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Set max height for the track. For example, you can increase this if the layout says \"Max height reached\"" }), (0, jsx_runtime_1.jsx)(material_1.TextField, { value: max, onChange: event => {
20
+ setMax(event.target.value);
21
+ }, placeholder: "Enter max score" }), !ok ? (0, jsx_runtime_1.jsx)("div", { style: { color: 'red' }, children: "Invalid number" }) : null] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", autoFocus: true, disabled: !ok, onClick: () => {
22
+ model.setMaxHeight(+max);
23
+ handleClose();
24
+ }, children: "Submit" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
25
+ handleClose();
26
+ }, children: "Cancel" })] })] }));
56
27
  });
57
28
  exports.default = SetMaxHeightDialog;
@@ -37,7 +37,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
37
37
  status?: string;
38
38
  reactElement?: React.ReactElement;
39
39
  };
40
- }) => import("react").JSX.Element | undefined;
40
+ }) => import("react/jsx-runtime").JSX.Element | undefined;
41
41
  renderProps: any;
42
42
  } & {
43
43
  doReload(): void;
@@ -177,13 +177,13 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
177
177
  } & {
178
178
  readonly statsReadyAndRegionNotTooLarge: boolean;
179
179
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
180
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
180
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
181
181
  } & {
182
182
  featureIdUnderMouse: undefined | string;
183
183
  contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
184
184
  } & {
185
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
186
- readonly blockType: "dynamicBlocks" | "staticBlocks";
185
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
186
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
187
187
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
188
188
  } & {
189
189
  readonly renderDelay: number;
@@ -210,7 +210,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
210
210
  contextMenuItems(): MenuItem[];
211
211
  renderProps(): any;
212
212
  } & {
213
- renderSvg(opts: import("../BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
213
+ renderSvg(opts: import("../BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
214
214
  afterAttach(): void;
215
215
  } & {
216
216
  readonly activeFilters: any;
@@ -290,7 +290,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
290
290
  status?: string;
291
291
  reactElement?: React.ReactElement;
292
292
  };
293
- }) => import("react").JSX.Element | undefined;
293
+ }) => import("react/jsx-runtime").JSX.Element | undefined;
294
294
  renderProps: any;
295
295
  } & {
296
296
  doReload(): void;
@@ -15,13 +15,23 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
@@ -1,7 +1,6 @@
1
- import React from 'react';
2
1
  import type { LinearGenomeViewModel } from '..';
3
2
  type LGV = LinearGenomeViewModel;
4
3
  declare const CenterLine: ({ model }: {
5
4
  model: LGV;
6
- }) => React.JSX.Element | null;
5
+ }) => import("react/jsx-runtime").JSX.Element | null;
7
6
  export default CenterLine;
@@ -1,29 +1,7 @@
1
1
  "use strict";
2
- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
3
- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  Object.defineProperty(exports, "__esModule", { value: true });
26
- const react_1 = __importStar(require("react"));
3
+ const jsx_runtime_1 = require("react/jsx-runtime");
4
+ const react_1 = require("react");
27
5
  const mobx_react_1 = require("mobx-react");
28
6
  const mui_1 = require("tss-react/mui");
29
7
  const useStyles = (0, mui_1.makeStyles)()(theme => ({
@@ -49,16 +27,12 @@ const CenterLine = (0, mobx_react_1.observer)(function ({ model }) {
49
27
  const ref = (0, react_1.useRef)(null);
50
28
  const { classes } = useStyles();
51
29
  const startingPosition = width / 2;
52
- return tracks.length ? (react_1.default.createElement("div", { "data-testid": "centerline_container", className: classes.centerLineContainer, role: "presentation", ref: ref, style: {
30
+ return tracks.length ? ((0, jsx_runtime_1.jsx)("div", { "data-testid": "centerline_container", className: classes.centerLineContainer, role: "presentation", ref: ref, style: {
53
31
  left: `${startingPosition}px`,
54
32
  width: Math.max(1 / bpPerPx, 1),
55
- } }, centerLineInfo && (react_1.default.createElement("div", { "data-testid": "centerline_text", className: classes.centerLineText, role: "presentation", style: {
56
- left: Math.max(1 / bpPerPx, 1) + 5,
57
- top: trackHeights,
58
- } },
59
- centerLineInfo.refName,
60
- ":",
61
- ' ',
62
- Math.max(Math.round(centerLineInfo.offset) + 1, 0))))) : null;
33
+ }, children: centerLineInfo && ((0, jsx_runtime_1.jsxs)("div", { "data-testid": "centerline_text", className: classes.centerLineText, role: "presentation", style: {
34
+ left: Math.max(1 / bpPerPx, 1) + 5,
35
+ top: trackHeights,
36
+ }, children: [centerLineInfo.refName, ":", ' ', Math.max(Math.round(centerLineInfo.offset) + 1, 0)] })) })) : null;
63
37
  });
64
38
  exports.default = CenterLine;
@@ -1,4 +1,3 @@
1
- import React from 'react';
2
1
  import type { Assembly } from '@jbrowse/core/assemblyManager/assembly';
3
2
  import type { Base1DViewModel } from '@jbrowse/core/util/Base1DViewModel';
4
3
  import type { ContentBlock } from '@jbrowse/core/util/blockTypes';
@@ -6,5 +5,5 @@ declare const Cytobands: ({ overview, block, assembly, }: {
6
5
  overview: Base1DViewModel;
7
6
  assembly?: Assembly;
8
7
  block: ContentBlock;
9
- }) => React.JSX.Element;
8
+ }) => import("react/jsx-runtime").JSX.Element;
10
9
  export default Cytobands;
@@ -1,9 +1,6 @@
1
1
  "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
2
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
3
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
4
  const util_1 = require("@jbrowse/core/util");
8
5
  const mobx_react_1 = require("mobx-react");
9
6
  const util_2 = require("./util");
@@ -45,32 +42,32 @@ const Cytobands = (0, mobx_react_1.observer)(function ({ overview, block, assemb
45
42
  const rcap = reversed ? 0 : cytobands.length - 1;
46
43
  const h = consts_1.HEADER_OVERVIEW_HEIGHT;
47
44
  let centromereSeen = false;
48
- return (react_1.default.createElement("g", { transform: `translate(-${offsetPx})` }, cytobands.map((args, index) => {
49
- const k = JSON.stringify(args);
50
- const { refName, type, start, end } = args;
51
- const s = overview.bpToPx({ refName, coord: start }) || 0;
52
- const e = overview.bpToPx({ refName, coord: end }) || 0;
53
- const l = Math.min(s, e);
54
- const w = Math.abs(e - s);
55
- const c = colorMap[type] || 'black';
56
- if (type === 'acen' && !centromereSeen) {
57
- centromereSeen = true;
58
- return (react_1.default.createElement("polygon", { key: k, points: reversed
59
- ? rightTriangle(s - w, 0, w, h)
60
- : leftTriangle(s, 0, w, h), ...(0, util_1.getFillProps)(c) }));
61
- }
62
- if (type === 'acen' && centromereSeen) {
63
- return (react_1.default.createElement("polygon", { key: k, points: reversed
64
- ? leftTriangle(s - w, 0, w, h)
65
- : rightTriangle(s, 0, w, h), ...(0, util_1.getFillProps)(c) }));
66
- }
67
- if (lcap === index) {
68
- return (react_1.default.createElement("path", { key: k, d: leftRoundedRect(l, 0, w, h, 8), ...(0, util_1.getFillProps)(c) }));
69
- }
70
- if (rcap === index) {
71
- return (react_1.default.createElement("path", { key: k, d: rightRoundedRect(l, 0, w, h, 8), ...(0, util_1.getFillProps)(c) }));
72
- }
73
- return (react_1.default.createElement("rect", { key: k, x: l, y: 0, width: w, height: h, ...(0, util_1.getFillProps)(c) }));
74
- })));
45
+ return ((0, jsx_runtime_1.jsx)("g", { transform: `translate(-${offsetPx})`, children: cytobands.map((args, index) => {
46
+ const k = JSON.stringify(args);
47
+ const { refName, type, start, end } = args;
48
+ const s = overview.bpToPx({ refName, coord: start }) || 0;
49
+ const e = overview.bpToPx({ refName, coord: end }) || 0;
50
+ const l = Math.min(s, e);
51
+ const w = Math.abs(e - s);
52
+ const c = colorMap[type] || 'black';
53
+ if (type === 'acen' && !centromereSeen) {
54
+ centromereSeen = true;
55
+ return ((0, jsx_runtime_1.jsx)("polygon", { points: reversed
56
+ ? rightTriangle(s - w, 0, w, h)
57
+ : leftTriangle(s, 0, w, h), ...(0, util_1.getFillProps)(c) }, k));
58
+ }
59
+ if (type === 'acen' && centromereSeen) {
60
+ return ((0, jsx_runtime_1.jsx)("polygon", { points: reversed
61
+ ? leftTriangle(s - w, 0, w, h)
62
+ : rightTriangle(s, 0, w, h), ...(0, util_1.getFillProps)(c) }, k));
63
+ }
64
+ if (lcap === index) {
65
+ return ((0, jsx_runtime_1.jsx)("path", { d: leftRoundedRect(l, 0, w, h, 8), ...(0, util_1.getFillProps)(c) }, k));
66
+ }
67
+ if (rcap === index) {
68
+ return ((0, jsx_runtime_1.jsx)("path", { d: rightRoundedRect(l, 0, w, h, 8), ...(0, util_1.getFillProps)(c) }, k));
69
+ }
70
+ return ((0, jsx_runtime_1.jsx)("rect", { x: l, y: 0, width: w, height: h, ...(0, util_1.getFillProps)(c) }, k));
71
+ }) }));
75
72
  });
76
73
  exports.default = Cytobands;
@@ -1,8 +1,7 @@
1
- import React from 'react';
2
- import type { ExportSvgOptions } from '..';
1
+ import type { ExportSvgOptions } from '../types';
3
2
  export default function ExportSvgDialog({ model, handleClose, }: {
4
3
  model: {
5
4
  exportSvg(opts: ExportSvgOptions): Promise<void>;
6
5
  };
7
6
  handleClose: () => void;
8
- }): React.JSX.Element;
7
+ }): import("react/jsx-runtime").JSX.Element;