@jbrowse/plugin-linear-genome-view 2.18.0 → 3.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (294) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -2
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +17 -44
  3. package/dist/BaseLinearDisplay/components/Block.d.ts +3 -4
  4. package/dist/BaseLinearDisplay/components/Block.js +4 -7
  5. package/dist/BaseLinearDisplay/components/BlockError.d.ts +1 -2
  6. package/dist/BaseLinearDisplay/components/BlockError.js +9 -15
  7. package/dist/BaseLinearDisplay/components/BlockMsg.d.ts +1 -2
  8. package/dist/BaseLinearDisplay/components/BlockMsg.js +3 -8
  9. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -3
  10. package/dist/BaseLinearDisplay/components/LinearBlocks.js +21 -27
  11. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +1 -2
  12. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +23 -14
  13. package/dist/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -3
  14. package/dist/BaseLinearDisplay/components/TooLargeMessage.js +11 -7
  15. package/dist/BaseLinearDisplay/components/Tooltip.d.ts +7 -4
  16. package/dist/BaseLinearDisplay/components/Tooltip.js +5 -5
  17. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +7 -7
  18. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +17 -7
  19. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +1 -2
  20. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +2 -2
  21. package/dist/BaseLinearDisplay/models/renderSvg.d.ts +2 -3
  22. package/dist/BaseLinearDisplay/models/renderSvg.js +26 -26
  23. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
  24. package/dist/LinearBareDisplay/model.d.ts +6 -6
  25. package/dist/LinearBasicDisplay/components/AddFiltersDialog.d.ts +1 -2
  26. package/dist/LinearBasicDisplay/components/AddFiltersDialog.js +16 -57
  27. package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +1 -2
  28. package/dist/LinearBasicDisplay/components/SetMaxHeightDialog.js +10 -39
  29. package/dist/LinearBasicDisplay/model.d.ts +6 -6
  30. package/dist/LinearBasicDisplay/model.js +17 -7
  31. package/dist/LinearGenomeView/components/CenterLine.d.ts +1 -2
  32. package/dist/LinearGenomeView/components/CenterLine.js +7 -33
  33. package/dist/LinearGenomeView/components/Cytobands.d.ts +1 -2
  34. package/dist/LinearGenomeView/components/Cytobands.js +28 -31
  35. package/dist/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -3
  36. package/dist/LinearGenomeView/components/ExportSvgDialog.js +34 -72
  37. package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +1 -2
  38. package/dist/LinearGenomeView/components/GetSequenceDialog.js +27 -62
  39. package/dist/LinearGenomeView/components/Gridlines.d.ts +1 -2
  40. package/dist/LinearGenomeView/components/Gridlines.js +23 -28
  41. package/dist/LinearGenomeView/components/Header.d.ts +3 -5
  42. package/dist/LinearGenomeView/components/Header.js +10 -61
  43. package/dist/LinearGenomeView/components/HeaderPanControls.d.ts +6 -0
  44. package/dist/LinearGenomeView/components/HeaderPanControls.js +30 -0
  45. package/dist/LinearGenomeView/components/HeaderRegionWidth.d.ts +5 -0
  46. package/dist/LinearGenomeView/components/HeaderRegionWidth.js +21 -0
  47. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +5 -0
  48. package/dist/LinearGenomeView/components/HeaderTrackSelectorButton.js +19 -0
  49. package/dist/LinearGenomeView/components/HeaderZoomControls.d.ts +5 -0
  50. package/dist/LinearGenomeView/components/HeaderZoomControls.js +103 -0
  51. package/dist/LinearGenomeView/components/Highlight.d.ts +9 -4
  52. package/dist/LinearGenomeView/components/Highlight.js +32 -58
  53. package/dist/LinearGenomeView/components/ImportForm.d.ts +1 -2
  54. package/dist/LinearGenomeView/components/ImportForm.js +31 -67
  55. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +1 -2
  56. package/dist/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +2 -2
  57. package/dist/LinearGenomeView/components/LinearGenomeView.d.ts +1 -2
  58. package/dist/LinearGenomeView/components/LinearGenomeView.js +24 -17
  59. package/dist/LinearGenomeView/components/MiniControls.d.ts +1 -2
  60. package/dist/LinearGenomeView/components/MiniControls.js +6 -13
  61. package/dist/LinearGenomeView/components/NoTracksActiveButton.d.ts +1 -2
  62. package/dist/LinearGenomeView/components/NoTracksActiveButton.js +2 -7
  63. package/dist/LinearGenomeView/components/OverviewHighlight.d.ts +1 -2
  64. package/dist/LinearGenomeView/components/OverviewHighlight.js +3 -6
  65. package/dist/LinearGenomeView/components/OverviewRubberband.d.ts +1 -2
  66. package/dist/LinearGenomeView/components/OverviewRubberband.js +6 -33
  67. package/dist/LinearGenomeView/components/OverviewScalebar.d.ts +1 -2
  68. package/dist/LinearGenomeView/components/OverviewScalebar.js +30 -64
  69. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +1 -2
  70. package/dist/LinearGenomeView/components/OverviewScalebarPolygon.js +2 -5
  71. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +1 -2
  72. package/dist/LinearGenomeView/components/OverviewScalebarTickLabels.js +3 -6
  73. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +1 -2
  74. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +3 -3
  75. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +1 -2
  76. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +25 -22
  77. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +1 -2
  78. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +4 -43
  79. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -2
  80. package/dist/LinearGenomeView/components/RefNameAutocomplete/index.js +21 -10
  81. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +6 -0
  82. package/dist/LinearGenomeView/components/RegionWidthEditorDialog.js +30 -0
  83. package/dist/LinearGenomeView/components/Rubberband.d.ts +1 -2
  84. package/dist/LinearGenomeView/components/Rubberband.js +7 -32
  85. package/dist/LinearGenomeView/components/RubberbandSpan.d.ts +1 -2
  86. package/dist/LinearGenomeView/components/RubberbandSpan.js +16 -34
  87. package/dist/LinearGenomeView/components/Scalebar.d.ts +1 -1
  88. package/dist/LinearGenomeView/components/Scalebar.js +10 -13
  89. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -2
  90. package/dist/LinearGenomeView/components/ScalebarCoordinateLabels.js +17 -17
  91. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +1 -2
  92. package/dist/LinearGenomeView/components/ScalebarCoordinateTicks.js +9 -12
  93. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -2
  94. package/dist/LinearGenomeView/components/ScalebarRefNameLabels.js +12 -19
  95. package/dist/LinearGenomeView/components/SearchBox.d.ts +1 -2
  96. package/dist/LinearGenomeView/components/SearchBox.js +2 -2
  97. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -2
  98. package/dist/LinearGenomeView/components/SearchResultsDialog.js +4 -14
  99. package/dist/LinearGenomeView/components/SearchResultsTable.d.ts +1 -2
  100. package/dist/LinearGenomeView/components/SearchResultsTable.js +15 -31
  101. package/dist/LinearGenomeView/components/SequenceSearchDialog.d.ts +1 -2
  102. package/dist/LinearGenomeView/components/SequenceSearchDialog.js +39 -72
  103. package/dist/LinearGenomeView/components/TrackContainer.d.ts +1 -2
  104. package/dist/LinearGenomeView/components/TrackContainer.js +10 -36
  105. package/dist/LinearGenomeView/components/TrackLabel.d.ts +1 -2
  106. package/dist/LinearGenomeView/components/TrackLabel.js +10 -78
  107. package/dist/LinearGenomeView/components/TrackLabelContainer.d.ts +1 -2
  108. package/dist/LinearGenomeView/components/TrackLabelContainer.js +2 -2
  109. package/dist/LinearGenomeView/components/TrackLabelDragHandle.d.ts +1 -2
  110. package/dist/LinearGenomeView/components/TrackLabelDragHandle.js +3 -4
  111. package/dist/LinearGenomeView/components/TrackLabelMenu.d.ts +5 -0
  112. package/dist/LinearGenomeView/components/TrackLabelMenu.js +79 -0
  113. package/dist/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
  114. package/dist/LinearGenomeView/components/TrackRenderingContainer.js +10 -37
  115. package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -2
  116. package/dist/LinearGenomeView/components/TracksContainer.js +33 -27
  117. package/dist/LinearGenomeView/components/VerticalGuide.d.ts +1 -2
  118. package/dist/LinearGenomeView/components/VerticalGuide.js +3 -7
  119. package/dist/LinearGenomeView/components/useRangeSelect.d.ts +1 -1
  120. package/dist/LinearGenomeView/components/useWheelScroll.d.ts +1 -1
  121. package/dist/LinearGenomeView/components/useWheelScroll.js +1 -1
  122. package/dist/LinearGenomeView/index.js +17 -7
  123. package/dist/LinearGenomeView/model.d.ts +1 -39
  124. package/dist/LinearGenomeView/model.js +28 -31
  125. package/dist/LinearGenomeView/svgcomponents/SVGBackground.d.ts +1 -2
  126. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +2 -5
  127. package/dist/LinearGenomeView/svgcomponents/SVGHeader.d.ts +1 -2
  128. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +2 -12
  129. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +2 -1
  130. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +2 -12
  131. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +1 -2
  132. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +2 -5
  133. package/dist/LinearGenomeView/svgcomponents/SVGRuler.d.ts +1 -2
  134. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +17 -29
  135. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +1 -2
  136. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +2 -9
  137. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +1 -2
  138. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +2 -5
  139. package/dist/LinearGenomeView/svgcomponents/SVGTracks.d.ts +1 -2
  140. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +18 -15
  141. package/dist/LinearGenomeView/types.d.ts +38 -0
  142. package/dist/LinearGenomeView/types.js +2 -0
  143. package/dist/LinearGenomeView/util.d.ts +3 -1
  144. package/dist/LinearGenomeView/util.js +16 -0
  145. package/dist/index.d.ts +10 -10
  146. package/dist/index.js +19 -8
  147. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -2
  148. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +17 -21
  149. package/esm/BaseLinearDisplay/components/Block.d.ts +3 -4
  150. package/esm/BaseLinearDisplay/components/Block.js +4 -4
  151. package/esm/BaseLinearDisplay/components/BlockError.d.ts +1 -2
  152. package/esm/BaseLinearDisplay/components/BlockError.js +9 -15
  153. package/esm/BaseLinearDisplay/components/BlockMsg.d.ts +1 -2
  154. package/esm/BaseLinearDisplay/components/BlockMsg.js +3 -5
  155. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +2 -3
  156. package/esm/BaseLinearDisplay/components/LinearBlocks.js +21 -24
  157. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +1 -2
  158. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +6 -7
  159. package/esm/BaseLinearDisplay/components/TooLargeMessage.d.ts +2 -3
  160. package/esm/BaseLinearDisplay/components/TooLargeMessage.js +11 -7
  161. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +7 -4
  162. package/esm/BaseLinearDisplay/components/Tooltip.js +5 -5
  163. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +7 -7
  164. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +1 -2
  165. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.js +2 -2
  166. package/esm/BaseLinearDisplay/models/renderSvg.d.ts +2 -3
  167. package/esm/BaseLinearDisplay/models/renderSvg.js +9 -16
  168. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +1 -1
  169. package/esm/LinearBareDisplay/model.d.ts +6 -6
  170. package/esm/LinearBasicDisplay/components/AddFiltersDialog.d.ts +1 -2
  171. package/esm/LinearBasicDisplay/components/AddFiltersDialog.js +16 -34
  172. package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.d.ts +1 -2
  173. package/esm/LinearBasicDisplay/components/SetMaxHeightDialog.js +10 -16
  174. package/esm/LinearBasicDisplay/model.d.ts +6 -6
  175. package/esm/LinearGenomeView/components/CenterLine.d.ts +1 -2
  176. package/esm/LinearGenomeView/components/CenterLine.js +7 -10
  177. package/esm/LinearGenomeView/components/Cytobands.d.ts +1 -2
  178. package/esm/LinearGenomeView/components/Cytobands.js +28 -28
  179. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +2 -3
  180. package/esm/LinearGenomeView/components/ExportSvgDialog.js +34 -49
  181. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +1 -2
  182. package/esm/LinearGenomeView/components/GetSequenceDialog.js +27 -39
  183. package/esm/LinearGenomeView/components/Gridlines.d.ts +1 -2
  184. package/esm/LinearGenomeView/components/Gridlines.js +23 -25
  185. package/esm/LinearGenomeView/components/Header.d.ts +3 -5
  186. package/esm/LinearGenomeView/components/Header.js +11 -62
  187. package/esm/LinearGenomeView/components/HeaderPanControls.d.ts +6 -0
  188. package/esm/LinearGenomeView/components/HeaderPanControls.js +24 -0
  189. package/esm/LinearGenomeView/components/HeaderRegionWidth.d.ts +5 -0
  190. package/esm/LinearGenomeView/components/HeaderRegionWidth.js +19 -0
  191. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.d.ts +5 -0
  192. package/esm/LinearGenomeView/components/HeaderTrackSelectorButton.js +17 -0
  193. package/esm/LinearGenomeView/components/HeaderZoomControls.d.ts +5 -0
  194. package/esm/LinearGenomeView/components/HeaderZoomControls.js +65 -0
  195. package/esm/LinearGenomeView/components/Highlight.d.ts +9 -4
  196. package/esm/LinearGenomeView/components/Highlight.js +32 -35
  197. package/esm/LinearGenomeView/components/ImportForm.d.ts +1 -2
  198. package/esm/LinearGenomeView/components/ImportForm.js +32 -45
  199. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.d.ts +1 -2
  200. package/esm/LinearGenomeView/components/ImportFormRefNameAutocomplete.js +2 -2
  201. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +1 -2
  202. package/esm/LinearGenomeView/components/LinearGenomeView.js +7 -10
  203. package/esm/LinearGenomeView/components/MiniControls.d.ts +1 -2
  204. package/esm/LinearGenomeView/components/MiniControls.js +6 -13
  205. package/esm/LinearGenomeView/components/NoTracksActiveButton.d.ts +1 -2
  206. package/esm/LinearGenomeView/components/NoTracksActiveButton.js +2 -4
  207. package/esm/LinearGenomeView/components/OverviewHighlight.d.ts +1 -2
  208. package/esm/LinearGenomeView/components/OverviewHighlight.js +3 -3
  209. package/esm/LinearGenomeView/components/OverviewRubberband.d.ts +1 -2
  210. package/esm/LinearGenomeView/components/OverviewRubberband.js +6 -10
  211. package/esm/LinearGenomeView/components/OverviewScalebar.d.ts +1 -2
  212. package/esm/LinearGenomeView/components/OverviewScalebar.js +30 -41
  213. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.d.ts +1 -2
  214. package/esm/LinearGenomeView/components/OverviewScalebarPolygon.js +2 -2
  215. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.d.ts +1 -2
  216. package/esm/LinearGenomeView/components/OverviewScalebarTickLabels.js +3 -3
  217. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.d.ts +1 -2
  218. package/esm/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +3 -3
  219. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.d.ts +1 -2
  220. package/esm/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +8 -15
  221. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.d.ts +1 -2
  222. package/esm/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +4 -40
  223. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.d.ts +1 -2
  224. package/esm/LinearGenomeView/components/RefNameAutocomplete/index.js +4 -3
  225. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.d.ts +6 -0
  226. package/esm/LinearGenomeView/components/RegionWidthEditorDialog.js +28 -0
  227. package/esm/LinearGenomeView/components/Rubberband.d.ts +1 -2
  228. package/esm/LinearGenomeView/components/Rubberband.js +7 -9
  229. package/esm/LinearGenomeView/components/RubberbandSpan.d.ts +1 -2
  230. package/esm/LinearGenomeView/components/RubberbandSpan.js +16 -11
  231. package/esm/LinearGenomeView/components/Scalebar.d.ts +1 -1
  232. package/esm/LinearGenomeView/components/Scalebar.js +10 -13
  233. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.d.ts +1 -2
  234. package/esm/LinearGenomeView/components/ScalebarCoordinateLabels.js +17 -17
  235. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.d.ts +1 -2
  236. package/esm/LinearGenomeView/components/ScalebarCoordinateTicks.js +9 -9
  237. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.d.ts +1 -2
  238. package/esm/LinearGenomeView/components/ScalebarRefNameLabels.js +12 -16
  239. package/esm/LinearGenomeView/components/SearchBox.d.ts +1 -2
  240. package/esm/LinearGenomeView/components/SearchBox.js +2 -2
  241. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +1 -2
  242. package/esm/LinearGenomeView/components/SearchResultsDialog.js +4 -14
  243. package/esm/LinearGenomeView/components/SearchResultsTable.d.ts +1 -2
  244. package/esm/LinearGenomeView/components/SearchResultsTable.js +15 -28
  245. package/esm/LinearGenomeView/components/SequenceSearchDialog.d.ts +1 -2
  246. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +39 -49
  247. package/esm/LinearGenomeView/components/TrackContainer.d.ts +1 -2
  248. package/esm/LinearGenomeView/components/TrackContainer.js +10 -13
  249. package/esm/LinearGenomeView/components/TrackLabel.d.ts +1 -2
  250. package/esm/LinearGenomeView/components/TrackLabel.js +10 -78
  251. package/esm/LinearGenomeView/components/TrackLabelContainer.d.ts +1 -2
  252. package/esm/LinearGenomeView/components/TrackLabelContainer.js +2 -2
  253. package/esm/LinearGenomeView/components/TrackLabelDragHandle.d.ts +1 -2
  254. package/esm/LinearGenomeView/components/TrackLabelDragHandle.js +3 -4
  255. package/esm/LinearGenomeView/components/TrackLabelMenu.d.ts +5 -0
  256. package/esm/LinearGenomeView/components/TrackLabelMenu.js +74 -0
  257. package/esm/LinearGenomeView/components/TrackRenderingContainer.d.ts +1 -2
  258. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +10 -14
  259. package/esm/LinearGenomeView/components/TracksContainer.d.ts +1 -2
  260. package/esm/LinearGenomeView/components/TracksContainer.js +16 -20
  261. package/esm/LinearGenomeView/components/VerticalGuide.d.ts +1 -2
  262. package/esm/LinearGenomeView/components/VerticalGuide.js +3 -4
  263. package/esm/LinearGenomeView/components/useRangeSelect.d.ts +1 -1
  264. package/esm/LinearGenomeView/components/useWheelScroll.d.ts +1 -1
  265. package/esm/LinearGenomeView/components/useWheelScroll.js +1 -1
  266. package/esm/LinearGenomeView/model.d.ts +1 -39
  267. package/esm/LinearGenomeView/model.js +10 -22
  268. package/esm/LinearGenomeView/svgcomponents/SVGBackground.d.ts +1 -2
  269. package/esm/LinearGenomeView/svgcomponents/SVGBackground.js +2 -2
  270. package/esm/LinearGenomeView/svgcomponents/SVGHeader.d.ts +1 -2
  271. package/esm/LinearGenomeView/svgcomponents/SVGHeader.js +2 -12
  272. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.d.ts +2 -1
  273. package/esm/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +2 -12
  274. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.d.ts +1 -2
  275. package/esm/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +2 -2
  276. package/esm/LinearGenomeView/svgcomponents/SVGRuler.d.ts +1 -2
  277. package/esm/LinearGenomeView/svgcomponents/SVGRuler.js +17 -29
  278. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.d.ts +1 -2
  279. package/esm/LinearGenomeView/svgcomponents/SVGScalebar.js +2 -6
  280. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.d.ts +1 -2
  281. package/esm/LinearGenomeView/svgcomponents/SVGTrackLabel.js +2 -2
  282. package/esm/LinearGenomeView/svgcomponents/SVGTracks.d.ts +1 -2
  283. package/esm/LinearGenomeView/svgcomponents/SVGTracks.js +18 -15
  284. package/esm/LinearGenomeView/types.d.ts +38 -0
  285. package/esm/LinearGenomeView/types.js +1 -0
  286. package/esm/LinearGenomeView/util.d.ts +3 -1
  287. package/esm/LinearGenomeView/util.js +16 -1
  288. package/esm/index.d.ts +10 -10
  289. package/esm/index.js +2 -1
  290. package/package.json +2 -2
  291. package/dist/LinearGenomeView/components/ZoomControls.d.ts +0 -6
  292. package/dist/LinearGenomeView/components/ZoomControls.js +0 -66
  293. package/esm/LinearGenomeView/components/ZoomControls.d.ts +0 -6
  294. package/esm/LinearGenomeView/components/ZoomControls.js +0 -38
@@ -1,9 +1,8 @@
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- import React from 'react';
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  import type { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
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  declare const BaseLinearDisplay: (props: {
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  model: BaseLinearDisplayModel;
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  children?: React.ReactNode;
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- }) => React.JSX.Element;
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+ }) => import("react/jsx-runtime").JSX.Element;
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  export default BaseLinearDisplay;
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  export { default as Tooltip } from './Tooltip';
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  export { default as BlockMsg } from './BlockMsg';
@@ -1,33 +1,11 @@
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  "use strict";
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- var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
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- if (k2 === undefined) k2 = k;
4
- var desc = Object.getOwnPropertyDescriptor(m, k);
5
- if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
6
- desc = { enumerable: true, get: function() { return m[k]; } };
7
- }
8
- Object.defineProperty(o, k2, desc);
9
- }) : (function(o, m, k, k2) {
10
- if (k2 === undefined) k2 = k;
11
- o[k2] = m[k];
12
- }));
13
- var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
14
- Object.defineProperty(o, "default", { enumerable: true, value: v });
15
- }) : function(o, v) {
16
- o["default"] = v;
17
- });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
25
2
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
4
  };
28
5
  Object.defineProperty(exports, "__esModule", { value: true });
29
6
  exports.BlockMsg = exports.Tooltip = void 0;
30
- const react_1 = __importStar(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
+ const react_1 = require("react");
31
9
  const configuration_1 = require("@jbrowse/core/configuration");
32
10
  const ui_1 = require("@jbrowse/core/ui");
33
11
  const material_1 = require("@mui/material");
@@ -54,7 +32,7 @@ const BaseLinearDisplay = (0, mobx_react_1.observer)(function (props) {
54
32
  const { model, children } = props;
55
33
  const { TooltipComponent, DisplayMessageComponent, height } = model;
56
34
  const items = model.contextMenuItems();
57
- return (react_1.default.createElement("div", { ref: ref, "data-testid": `display-${(0, configuration_1.getConf)(model, 'displayId')}`, className: classes.display, onContextMenu: event => {
35
+ return ((0, jsx_runtime_1.jsxs)("div", { ref: ref, "data-testid": `display-${(0, configuration_1.getConf)(model, 'displayId')}`, className: classes.display, onContextMenu: event => {
58
36
  event.preventDefault();
59
37
  if (contextCoord) {
60
38
  setContextCoord(undefined);
@@ -71,27 +49,22 @@ const BaseLinearDisplay = (0, mobx_react_1.observer)(function (props) {
71
49
  setOffsetMouseCoord([event.clientX - left, event.clientY - top]);
72
50
  setClientMouseCoord([event.clientX, event.clientY]);
73
51
  setClientRect(rect);
74
- } },
75
- DisplayMessageComponent ? (react_1.default.createElement(DisplayMessageComponent, { model: model })) : (react_1.default.createElement(LinearBlocks_1.default, { ...props })),
76
- children,
77
- react_1.default.createElement(react_1.Suspense, { fallback: null },
78
- react_1.default.createElement(TooltipComponent, { model: model, height: height, offsetMouseCoord: offsetMouseCoord, clientMouseCoord: clientMouseCoord, clientRect: clientRect, mouseCoord: offsetMouseCoord })),
79
- react_1.default.createElement(ui_1.Menu, { open: Boolean(contextCoord) && items.length > 0, onMenuItemClick: (_, callback) => {
80
- callback();
81
- setContextCoord(undefined);
82
- }, onClose: () => {
83
- setContextCoord(undefined);
84
- model.setContextMenuFeature(undefined);
85
- }, TransitionProps: {
86
- onExit: () => {
52
+ }, children: [DisplayMessageComponent ? ((0, jsx_runtime_1.jsx)(DisplayMessageComponent, { model: model })) : ((0, jsx_runtime_1.jsx)(LinearBlocks_1.default, { ...props })), children, (0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(TooltipComponent, { model: model, height: height, offsetMouseCoord: offsetMouseCoord, clientMouseCoord: clientMouseCoord, clientRect: clientRect, mouseCoord: offsetMouseCoord }) }), (0, jsx_runtime_1.jsx)(ui_1.Menu, { open: Boolean(contextCoord) && items.length > 0, onMenuItemClick: (_, callback) => {
53
+ callback();
54
+ setContextCoord(undefined);
55
+ }, onClose: () => {
87
56
  setContextCoord(undefined);
88
57
  model.setContextMenuFeature(undefined);
89
- },
90
- }, anchorReference: "anchorPosition", anchorPosition: contextCoord
91
- ? { top: contextCoord[1], left: contextCoord[0] }
92
- : undefined, style: {
93
- zIndex: theme.zIndex.tooltip,
94
- }, menuItems: items })));
58
+ }, TransitionProps: {
59
+ onExit: () => {
60
+ setContextCoord(undefined);
61
+ model.setContextMenuFeature(undefined);
62
+ },
63
+ }, anchorReference: "anchorPosition", anchorPosition: contextCoord
64
+ ? { top: contextCoord[1], left: contextCoord[0] }
65
+ : undefined, style: {
66
+ zIndex: theme.zIndex.tooltip,
67
+ }, menuItems: items })] }));
95
68
  });
96
69
  exports.default = BaseLinearDisplay;
97
70
  var Tooltip_1 = require("./Tooltip");
@@ -1,15 +1,14 @@
1
- import React from 'react';
2
1
  import type { BaseBlock } from '@jbrowse/core/util/blockTypes';
3
2
  declare const ContentBlock: ({ block, children, }: {
4
3
  block: BaseBlock;
5
4
  children: React.ReactNode;
6
- }) => React.JSX.Element;
5
+ }) => import("react/jsx-runtime").JSX.Element;
7
6
  declare function ElidedBlock({ width }: {
8
7
  width: number;
9
- }): React.JSX.Element;
8
+ }): import("react/jsx-runtime").JSX.Element;
10
9
  declare function InterRegionPaddingBlock({ boundary, width, style, }: {
11
10
  boundary: boolean;
12
11
  width: number;
13
12
  style?: React.CSSProperties;
14
- }): React.JSX.Element;
13
+ }): import("react/jsx-runtime").JSX.Element;
15
14
  export { ContentBlock, ElidedBlock, InterRegionPaddingBlock };
@@ -1,12 +1,9 @@
1
1
  "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
2
  Object.defineProperty(exports, "__esModule", { value: true });
6
3
  exports.ContentBlock = void 0;
7
4
  exports.ElidedBlock = ElidedBlock;
8
5
  exports.InterRegionPaddingBlock = InterRegionPaddingBlock;
9
- const react_1 = __importDefault(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
10
7
  const mobx_react_1 = require("mobx-react");
11
8
  const mui_1 = require("tss-react/mui");
12
9
  const useStyles = (0, mui_1.makeStyles)()(theme => ({
@@ -35,16 +32,16 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
35
32
  const ContentBlock = (0, mobx_react_1.observer)(function ({ block, children, }) {
36
33
  const { classes } = useStyles();
37
34
  const { widthPx } = block;
38
- return (react_1.default.createElement("div", { style: { width: widthPx }, className: classes.contentBlock }, children));
35
+ return ((0, jsx_runtime_1.jsx)("div", { style: { width: widthPx }, className: classes.contentBlock, children: children }));
39
36
  });
40
37
  exports.ContentBlock = ContentBlock;
41
38
  function ElidedBlock({ width }) {
42
39
  const { classes } = useStyles();
43
- return react_1.default.createElement("div", { className: classes.elidedBlock, style: { width } });
40
+ return (0, jsx_runtime_1.jsx)("div", { className: classes.elidedBlock, style: { width } });
44
41
  }
45
42
  function InterRegionPaddingBlock({ boundary, width, style = {}, }) {
46
43
  const { classes } = useStyles();
47
- return (react_1.default.createElement("div", { style: {
44
+ return ((0, jsx_runtime_1.jsx)("div", { style: {
48
45
  ...style,
49
46
  width,
50
47
  }, className: boundary
@@ -1,5 +1,4 @@
1
- import React from 'react';
2
1
  declare const BlockError: ({ model }: {
3
2
  model: any;
4
- }) => React.JSX.Element;
3
+ }) => import("react/jsx-runtime").JSX.Element;
5
4
  export default BlockError;
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
7
  const ErrorMessageStackTraceDialog_1 = __importDefault(require("@jbrowse/core/ui/ErrorMessageStackTraceDialog"));
8
8
  const util_1 = require("@jbrowse/core/util");
9
9
  const Refresh_1 = __importDefault(require("@mui/icons-material/Refresh"));
@@ -12,19 +12,13 @@ const material_1 = require("@mui/material");
12
12
  const mobx_react_1 = require("mobx-react");
13
13
  const BlockMsg_1 = __importDefault(require("./BlockMsg"));
14
14
  const BlockError = (0, mobx_react_1.observer)(function ({ model }) {
15
- return (react_1.default.createElement(BlockMsg_1.default, { message: `${model.error}`, severity: "error", action: react_1.default.createElement(react_1.default.Fragment, null,
16
- react_1.default.createElement(material_1.Tooltip, { title: "Reload track" },
17
- react_1.default.createElement(material_1.IconButton, { "data-testid": "reload_button", onClick: () => {
18
- model.reload();
19
- } },
20
- react_1.default.createElement(Refresh_1.default, null))),
21
- react_1.default.createElement(material_1.Tooltip, { title: "Show stack trace" },
22
- react_1.default.createElement(material_1.IconButton, { onClick: () => {
23
- (0, util_1.getSession)(model).queueDialog(onClose => [
24
- ErrorMessageStackTraceDialog_1.default,
25
- { onClose, error: model.error },
26
- ]);
27
- } },
28
- react_1.default.createElement(Report_1.default, null)))) }));
15
+ return ((0, jsx_runtime_1.jsx)(BlockMsg_1.default, { message: `${model.error}`, severity: "error", action: (0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Reload track", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { "data-testid": "reload_button", onClick: () => {
16
+ model.reload();
17
+ }, children: (0, jsx_runtime_1.jsx)(Refresh_1.default, {}) }) }), (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: "Show stack trace", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
18
+ (0, util_1.getSession)(model).queueDialog(onClose => [
19
+ ErrorMessageStackTraceDialog_1.default,
20
+ { onClose, error: model.error },
21
+ ]);
22
+ }, children: (0, jsx_runtime_1.jsx)(Report_1.default, {}) }) })] }) }));
29
23
  });
30
24
  exports.default = BlockError;
@@ -1,7 +1,6 @@
1
- import React from 'react';
2
1
  import type { AlertColor } from '@mui/material';
3
2
  export default function BlockMsg({ message, severity, action, }: {
4
3
  message: string;
5
4
  severity?: AlertColor;
6
5
  action?: React.ReactNode;
7
- }): React.JSX.Element;
6
+ }): import("react/jsx-runtime").JSX.Element;
@@ -1,10 +1,7 @@
1
1
  "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
2
  Object.defineProperty(exports, "__esModule", { value: true });
6
3
  exports.default = BlockMsg;
7
- const react_1 = __importDefault(require("react"));
4
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
5
  const material_1 = require("@mui/material");
9
6
  const mui_1 = require("tss-react/mui");
10
7
  const useStyles = (0, mui_1.makeStyles)()({
@@ -15,9 +12,7 @@ const useStyles = (0, mui_1.makeStyles)()({
15
12
  });
16
13
  function BlockMsg({ message, severity, action, }) {
17
14
  const { classes } = useStyles();
18
- return (react_1.default.createElement(material_1.Alert, { onClick: event => {
15
+ return ((0, jsx_runtime_1.jsx)(material_1.Alert, { onClick: event => {
19
16
  event.stopPropagation();
20
- }, severity: severity, action: action, classes: { message: classes.ellipses } },
21
- react_1.default.createElement(material_1.Tooltip, { title: message },
22
- react_1.default.createElement("div", null, message))));
17
+ }, severity: severity, action: action, classes: { message: classes.ellipses }, children: (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: message, children: (0, jsx_runtime_1.jsx)("div", { children: message }) }) }));
23
18
  }
@@ -1,10 +1,9 @@
1
- import React from 'react';
2
1
  import type { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
3
2
  declare const RenderedBlocks: ({ model, }: {
4
3
  model: BaseLinearDisplayModel;
5
- }) => React.JSX.Element;
4
+ }) => import("react/jsx-runtime").JSX.Element;
6
5
  export { RenderedBlocks };
7
6
  declare const LinearBlocks: ({ model, }: {
8
7
  model: BaseLinearDisplayModel;
9
- }) => React.JSX.Element;
8
+ }) => import("react/jsx-runtime").JSX.Element;
10
9
  export default LinearBlocks;
@@ -1,10 +1,7 @@
1
1
  "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
2
  Object.defineProperty(exports, "__esModule", { value: true });
6
3
  exports.RenderedBlocks = void 0;
7
- const react_1 = __importDefault(require("react"));
4
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
5
  const util_1 = require("@jbrowse/core/util");
9
6
  const mobx_react_1 = require("mobx-react");
10
7
  const mui_1 = require("tss-react/mui");
@@ -33,35 +30,32 @@ const useStyles = (0, mui_1.makeStyles)()({
33
30
  const RenderedBlocks = (0, mobx_react_1.observer)(function ({ model, }) {
34
31
  const { classes } = useStyles();
35
32
  const { blockDefinitions, blockState } = model;
36
- return (react_1.default.createElement(react_1.default.Fragment, null, blockDefinitions.map(block => {
37
- const key = `${model.id}-${block.key}`;
38
- if (block.type === 'ContentBlock') {
39
- const state = blockState.get(block.key);
40
- return (react_1.default.createElement(Block_1.ContentBlock, { block: block, key: key },
41
- (state === null || state === void 0 ? void 0 : state.ReactComponent) ? (react_1.default.createElement(state.ReactComponent, { model: state })) : null,
42
- (state === null || state === void 0 ? void 0 : state.maxHeightReached) ? (react_1.default.createElement("div", { className: classes.heightOverflowed, style: {
43
- top: state.layout.getTotalHeight() - 16,
44
- pointerEvents: 'none',
45
- height: 16,
46
- } }, "Max height reached")) : null));
47
- }
48
- if (block.type === 'ElidedBlock') {
49
- return react_1.default.createElement(Block_1.ElidedBlock, { key: key, width: block.widthPx });
50
- }
51
- if (block.type === 'InterRegionPaddingBlock') {
52
- return (react_1.default.createElement(Block_1.InterRegionPaddingBlock, { key: key, width: block.widthPx, style: { background: 'none' }, boundary: block.variant === 'boundary' }));
53
- }
54
- throw new Error(`invalid block type ${JSON.stringify(block)}`);
55
- })));
33
+ return ((0, jsx_runtime_1.jsx)(jsx_runtime_1.Fragment, { children: blockDefinitions.map(block => {
34
+ const key = `${model.id}-${block.key}`;
35
+ if (block.type === 'ContentBlock') {
36
+ const state = blockState.get(block.key);
37
+ return ((0, jsx_runtime_1.jsxs)(Block_1.ContentBlock, { block: block, children: [(state === null || state === void 0 ? void 0 : state.ReactComponent) ? ((0, jsx_runtime_1.jsx)(state.ReactComponent, { model: state })) : null, (state === null || state === void 0 ? void 0 : state.maxHeightReached) ? ((0, jsx_runtime_1.jsx)("div", { className: classes.heightOverflowed, style: {
38
+ top: state.layout.getTotalHeight() - 16,
39
+ pointerEvents: 'none',
40
+ height: 16,
41
+ }, children: "Max height reached" })) : null] }, key));
42
+ }
43
+ if (block.type === 'ElidedBlock') {
44
+ return (0, jsx_runtime_1.jsx)(Block_1.ElidedBlock, { width: block.widthPx }, key);
45
+ }
46
+ if (block.type === 'InterRegionPaddingBlock') {
47
+ return ((0, jsx_runtime_1.jsx)(Block_1.InterRegionPaddingBlock, { width: block.widthPx, style: { background: 'none' }, boundary: block.variant === 'boundary' }, key));
48
+ }
49
+ throw new Error(`invalid block type ${JSON.stringify(block)}`);
50
+ }) }));
56
51
  });
57
52
  exports.RenderedBlocks = RenderedBlocks;
58
53
  const LinearBlocks = (0, mobx_react_1.observer)(function ({ model, }) {
59
54
  const { classes } = useStyles();
60
55
  const { blockDefinitions } = model;
61
56
  const viewModel = (0, util_1.getContainingView)(model);
62
- return (react_1.default.createElement("div", { className: classes.linearBlocks, style: {
57
+ return ((0, jsx_runtime_1.jsx)("div", { className: classes.linearBlocks, style: {
63
58
  left: blockDefinitions.offsetPx - viewModel.offsetPx,
64
- } },
65
- react_1.default.createElement(RenderedBlocks, { model: model })));
59
+ }, children: (0, jsx_runtime_1.jsx)(RenderedBlocks, { model: model }) }));
66
60
  });
67
61
  exports.default = LinearBlocks;
@@ -1,4 +1,3 @@
1
- import React from 'react';
2
1
  declare const ServerSideRenderedBlockContent: ({ model, }: {
3
2
  model: {
4
3
  error?: unknown;
@@ -8,5 +7,5 @@ declare const ServerSideRenderedBlockContent: ({ model, }: {
8
7
  status?: string;
9
8
  reactElement?: React.ReactElement;
10
9
  };
11
- }) => React.JSX.Element | undefined;
10
+ }) => import("react/jsx-runtime").JSX.Element | undefined;
12
11
  export default ServerSideRenderedBlockContent;
@@ -15,18 +15,29 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
28
38
  Object.defineProperty(exports, "__esModule", { value: true });
29
- const react_1 = __importStar(require("react"));
39
+ const jsx_runtime_1 = require("react/jsx-runtime");
40
+ const react_1 = require("react");
30
41
  const ui_1 = require("@jbrowse/core/ui");
31
42
  const mobx_react_1 = require("mobx-react");
32
43
  const mobx_state_tree_1 = require("mobx-state-tree");
@@ -49,19 +60,17 @@ const LoadingMessage = (0, mobx_react_1.observer)(({ model }) => {
49
60
  const { status: blockStatus } = model;
50
61
  const { message: displayStatus } = (0, mobx_state_tree_1.getParent)(model, 2);
51
62
  const status = displayStatus || blockStatus;
52
- return (react_1.default.createElement("div", { className: classes.loading },
53
- react_1.default.createElement(ui_1.LoadingEllipses, { message: status })));
63
+ return ((0, jsx_runtime_1.jsx)("div", { className: classes.loading, children: (0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, { message: status }) }));
54
64
  });
55
65
  const ServerSideRenderedBlockContent = (0, mobx_react_1.observer)(function ({ model, }) {
56
66
  if (model.error) {
57
- return (react_1.default.createElement(react_1.Suspense, { fallback: null },
58
- react_1.default.createElement(BlockError, { model: model })));
67
+ return ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(BlockError, { model: model }) }));
59
68
  }
60
69
  else if (model.message) {
61
- return react_1.default.isValidElement(model.message) ? (model.message) : (react_1.default.createElement(BlockMsg_1.default, { message: `${model.message}`, severity: "info" }));
70
+ return (0, react_1.isValidElement)(model.message) ? (model.message) : ((0, jsx_runtime_1.jsx)(BlockMsg_1.default, { message: `${model.message}`, severity: "info" }));
62
71
  }
63
72
  else if (!model.filled) {
64
- return react_1.default.createElement(LoadingMessage, { model: model });
73
+ return (0, jsx_runtime_1.jsx)(LoadingMessage, { model: model });
65
74
  }
66
75
  else {
67
76
  return model.reactElement;
@@ -1,11 +1,10 @@
1
- import React from 'react';
2
1
  import type { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
3
- declare function TooLargeMessage({ model, }: {
2
+ declare const TooLargeMessage: ({ model, }: {
4
3
  model: {
5
4
  regionTooLargeReason: string;
6
5
  featureDensityStats?: FeatureDensityStats;
7
6
  setFeatureDensityStatsLimit: (s?: FeatureDensityStats) => void;
8
7
  reload: () => void;
9
8
  };
10
- }): React.JSX.Element;
9
+ }) => import("react/jsx-runtime").JSX.Element;
11
10
  export default TooLargeMessage;
@@ -3,19 +3,23 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
7
  const material_1 = require("@mui/material");
8
+ const mobx_react_1 = require("mobx-react");
9
+ const mobx_state_tree_1 = require("mobx-state-tree");
8
10
  const BlockMsg_1 = __importDefault(require("../components/BlockMsg"));
9
- function TooLargeMessage({ model, }) {
11
+ const TooLargeMessage = (0, mobx_react_1.observer)(function ({ model, }) {
10
12
  const { regionTooLargeReason } = model;
11
- return (react_1.default.createElement(BlockMsg_1.default, { severity: "warning", action: react_1.default.createElement(material_1.Button, { onClick: () => {
12
- model.setFeatureDensityStatsLimit(model.featureDensityStats);
13
- model.reload();
14
- } }, "Force load"), message: [
13
+ return ((0, jsx_runtime_1.jsx)(BlockMsg_1.default, { severity: "warning", action: (0, jsx_runtime_1.jsx)(material_1.Button, { onClick: () => {
14
+ if ((0, mobx_state_tree_1.isAlive)(model)) {
15
+ model.setFeatureDensityStatsLimit(model.featureDensityStats);
16
+ model.reload();
17
+ }
18
+ }, children: "Force load" }), message: [
15
19
  regionTooLargeReason,
16
20
  'Zoom in to see features or force load (may be slow)',
17
21
  ]
18
22
  .filter(f => !!f)
19
23
  .join('. ') }));
20
- }
24
+ });
21
25
  exports.default = TooLargeMessage;
@@ -1,8 +1,11 @@
1
- import React from 'react';
2
- import type { BaseLinearDisplayModel } from '../models/BaseLinearDisplayModel';
1
+ import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
2
+ import type { Feature } from '@jbrowse/core/util';
3
3
  type Coord = [number, number];
4
4
  declare const Tooltip: ({ model, clientMouseCoord, }: {
5
- model: BaseLinearDisplayModel;
5
+ model: {
6
+ featureUnderMouse: Feature | undefined;
7
+ configuration: AnyConfigurationModel;
8
+ };
6
9
  clientMouseCoord: Coord;
7
- }) => React.JSX.Element | null;
10
+ }) => import("react/jsx-runtime").JSX.Element | null;
8
11
  export default Tooltip;
@@ -3,13 +3,14 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- const react_1 = __importDefault(require("react"));
6
+ const jsx_runtime_1 = require("react/jsx-runtime");
7
+ const react_1 = require("react");
7
8
  const configuration_1 = require("@jbrowse/core/configuration");
8
9
  const ui_1 = require("@jbrowse/core/ui");
9
10
  const BaseTooltip_1 = __importDefault(require("@jbrowse/core/ui/BaseTooltip"));
10
11
  const mobx_react_1 = require("mobx-react");
11
- const TooltipContents = react_1.default.forwardRef(function TooltipContents2({ message }, ref) {
12
- return (react_1.default.createElement("div", { ref: ref }, react_1.default.isValidElement(message) ? (message) : message ? (react_1.default.createElement(ui_1.SanitizedHTML, { html: String(message) })) : null));
12
+ const TooltipContents = (0, react_1.forwardRef)(function TooltipContents2({ message }, ref) {
13
+ return ((0, jsx_runtime_1.jsx)("div", { ref: ref, children: (0, react_1.isValidElement)(message) ? (message) : message ? ((0, jsx_runtime_1.jsx)(ui_1.SanitizedHTML, { html: String(message) })) : null }));
13
14
  });
14
15
  const Tooltip = (0, mobx_react_1.observer)(function ({ model, clientMouseCoord, }) {
15
16
  const { featureUnderMouse } = model;
@@ -18,7 +19,6 @@ const Tooltip = (0, mobx_react_1.observer)(function ({ model, clientMouseCoord,
18
19
  const contents = featureUnderMouse
19
20
  ? (0, configuration_1.getConf)(model, 'mouseover', { feature: featureUnderMouse })
20
21
  : undefined;
21
- return featureUnderMouse && contents ? (react_1.default.createElement(BaseTooltip_1.default, { clientPoint: { x, y } },
22
- react_1.default.createElement(TooltipContents, { message: contents }))) : null;
22
+ return featureUnderMouse && contents ? ((0, jsx_runtime_1.jsx)(BaseTooltip_1.default, { clientPoint: { x, y }, children: (0, jsx_runtime_1.jsx)(TooltipContents, { message: contents }) })) : null;
23
23
  });
24
24
  exports.default = Tooltip;
@@ -1,6 +1,6 @@
1
1
  import type React from 'react';
2
2
  import CompositeMap from '@jbrowse/core/util/compositeMap';
3
- import type { ExportSvgOptions } from '../../LinearGenomeView';
3
+ import type { ExportSvgOptions } from '../../LinearGenomeView/types';
4
4
  import type { MenuItem } from '@jbrowse/core/ui';
5
5
  import type { AnyReactComponentType, Feature } from '@jbrowse/core/util';
6
6
  import type { BaseBlock } from '@jbrowse/core/util/blockTypes';
@@ -53,7 +53,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
53
53
  status?: string;
54
54
  reactElement?: React.ReactElement;
55
55
  };
56
- }) => React.JSX.Element | undefined;
56
+ }) => import("react/jsx-runtime").JSX.Element | undefined;
57
57
  renderProps: any;
58
58
  } & {
59
59
  doReload(): void;
@@ -185,13 +185,13 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
185
185
  } & {
186
186
  readonly statsReadyAndRegionNotTooLarge: boolean;
187
187
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
188
- regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): React.JSX.Element | null;
188
+ regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null;
189
189
  } & {
190
190
  featureIdUnderMouse: undefined | string;
191
191
  contextMenuFeature: undefined | Feature;
192
192
  } & {
193
- readonly DisplayMessageComponent: React.FC<any> | undefined;
194
- readonly blockType: "dynamicBlocks" | "staticBlocks";
193
+ readonly DisplayMessageComponent: undefined | React.FC<any>;
194
+ readonly blockType: "staticBlocks" | "dynamicBlocks";
195
195
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
196
196
  } & {
197
197
  readonly renderDelay: number;
@@ -218,7 +218,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
218
218
  contextMenuItems(): MenuItem[];
219
219
  renderProps(): any;
220
220
  } & {
221
- renderSvg(opts: ExportSvgDisplayOptions): Promise<React.JSX.Element>;
221
+ renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>;
222
222
  afterAttach(): void;
223
223
  }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
224
224
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
@@ -255,7 +255,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
255
255
  status?: string;
256
256
  reactElement?: React.ReactElement;
257
257
  };
258
- }) => React.JSX.Element | undefined;
258
+ }) => import("react/jsx-runtime").JSX.Element | undefined;
259
259
  renderProps: any;
260
260
  } & {
261
261
  doReload(): void;
@@ -15,13 +15,23 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
15
15
  }) : function(o, v) {
16
16
  o["default"] = v;
17
17
  });
18
- var __importStar = (this && this.__importStar) || function (mod) {
19
- if (mod && mod.__esModule) return mod;
20
- var result = {};
21
- if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
22
- __setModuleDefault(result, mod);
23
- return result;
24
- };
18
+ var __importStar = (this && this.__importStar) || (function () {
19
+ var ownKeys = function(o) {
20
+ ownKeys = Object.getOwnPropertyNames || function (o) {
21
+ var ar = [];
22
+ for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
23
+ return ar;
24
+ };
25
+ return ownKeys(o);
26
+ };
27
+ return function (mod) {
28
+ if (mod && mod.__esModule) return mod;
29
+ var result = {};
30
+ if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
31
+ __setModuleDefault(result, mod);
32
+ return result;
33
+ };
34
+ })();
25
35
  var __importDefault = (this && this.__importDefault) || function (mod) {
26
36
  return (mod && mod.__esModule) ? mod : { "default": mod };
27
37
  };
@@ -1,4 +1,3 @@
1
- import React from 'react';
2
1
  import type { FeatureDensityStats } from '@jbrowse/core/data_adapters/BaseAdapter';
3
2
  import type { Region } from '@jbrowse/core/util/types';
4
3
  export default function FeatureDensityMixin(): import("mobx-state-tree").IModelType<{
@@ -29,5 +28,5 @@ export default function FeatureDensityMixin(): import("mobx-state-tree").IModelT
29
28
  } & {
30
29
  readonly statsReadyAndRegionNotTooLarge: boolean;
31
30
  regionCannotBeRenderedText(_region: Region): "" | "Force load to see features";
32
- regionCannotBeRendered(_region: Region): React.JSX.Element | null;
31
+ regionCannotBeRendered(_region: Region): import("react/jsx-runtime").JSX.Element | null;
33
32
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
@@ -4,7 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.default = FeatureDensityMixin;
7
- const react_1 = __importDefault(require("react"));
7
+ const jsx_runtime_1 = require("react/jsx-runtime");
8
8
  const configuration_1 = require("@jbrowse/core/configuration");
9
9
  const util_1 = require("@jbrowse/core/util");
10
10
  const mobx_1 = require("mobx");
@@ -116,7 +116,7 @@ function FeatureDensityMixin() {
116
116
  return self.regionTooLarge ? 'Force load to see features' : '';
117
117
  },
118
118
  regionCannotBeRendered(_region) {
119
- return self.regionTooLarge ? (react_1.default.createElement(TooLargeMessage_1.default, { model: self })) : null;
119
+ return self.regionTooLarge ? ((0, jsx_runtime_1.jsx)(TooLargeMessage_1.default, { model: self })) : null;
120
120
  },
121
121
  }));
122
122
  }
@@ -1,8 +1,7 @@
1
- import React from 'react';
2
1
  import type { BaseLinearDisplayModel } from './BaseLinearDisplayModel';
3
- import type { ExportSvgOptions } from '../../LinearGenomeView';
2
+ import type { ExportSvgOptions } from '../../LinearGenomeView/types';
4
3
  import type { ThemeOptions } from '@mui/material';
5
4
  export declare function renderBaseLinearDisplaySvg(self: BaseLinearDisplayModel, opts: ExportSvgOptions & {
6
5
  overrideHeight: number;
7
6
  theme?: ThemeOptions;
8
- }): Promise<React.JSX.Element>;
7
+ }): Promise<import("react/jsx-runtime").JSX.Element>;