@jbrowse/plugin-linear-genome-view 2.12.0 → 2.12.2

package/dist/LinearBasicDisplay/model.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
 import { MenuItem } from '@jbrowse/core/ui';
 import { Instance } from 'mobx-state-tree';
@@ -40,7 +39,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     }, {
         renderInProgress: AbortController | undefined;
         filled: boolean;
-        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+        reactElement: import("react").ReactElement | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
         layout: any;
         status: string;
@@ -51,12 +50,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             model: {
                 error?: unknown;
                 reload: () => void;
-                message: import("react").ReactNode; /**
-                 * #property
-                 */
-                filled?: boolean | undefined;
-                status?: string | undefined;
-                reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                message: import("react").ReactNode;
+                filled?: boolean;
+                status?: string;
+                reactElement?: import("react").ReactElement;
             };
         }) => import("react").JSX.Element | undefined;
         renderProps: any;
@@ -64,12 +61,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void; /**
-         * #getter
-         */
+        setLoading(abortController: AbortController): void;
         setMessage(messageText: string): void;
         setRendered(props: {
-            reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+            reactElement: import("react").ReactElement;
             features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
             maxHeightReached: boolean;
@@ -97,9 +92,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         };
         mouseover: {
             type: string;
-            description: string; /**
-             * #property
-             */
+            description: string;
             defaultValue: string;
             contextVariable: string[];
         };
@@ -153,18 +146,20 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             error: unknown;
             message: string | undefined;
         } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-            id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-            type: import("mobx-state-tree").ISimpleType<string>; /**
+            id: import("mobx-state-tree" /**
              * #property
-             */
+             */).IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+            type: import("mobx-state-tree").ISimpleType<string>;
             rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
         }, {
             rendererTypeName: string;
             error: unknown;
             message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-        onHorizontalScroll?: Function | undefined;
-        blockState?: Record<string, any> | undefined;
+        onHorizontalScroll?: Function;
+        blockState? /**
+         * #getter
+         */: Record<string, any>;
     }>;
     readonly DisplayBlurb: import("react").FC<{
         model: {
@@ -184,19 +179,17 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             error: unknown;
             message: string | undefined;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    }> | null; /**
-     * #getter
-     */
+    }> | null;
     readonly adapterConfig: any;
     readonly parentTrack: any;
     renderProps(): any;
     readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+    readonly DisplayMessageComponent: undefined | import("react").FC<any>;
     trackMenuItems(): MenuItem[];
     readonly viewMenuActions: MenuItem[];
     regionCannotBeRendered(): null;
 } & {
-    setMessage(arg?: string | undefined): void;
+    setMessage(arg?: string): void;
     setError(error?: unknown): void;
     setRpcDriverName(rpcDriverName: string): void;
     reload(): void;
@@ -209,8 +202,8 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     setHeight(displayHeight: number): number;
     resizeHeight(distance: number): number;
 } & {
-    featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
-    featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
+    featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+    featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
     currStatsBpPerPx: number;
 } & {
     readonly currentBytesRequested: number;
@@ -222,22 +215,20 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     afterAttach(): void;
 } & {
     setCurrStatsBpPerPx(n: number): void;
-    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+    setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
     getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
     setFeatureDensityStatsP(arg: any): void;
-    setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+    setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
     clearFeatureDensityStats(): void;
 } & {
-    readonly regionTooLarge: boolean; /**
-     * #method
-     */
+    readonly regionTooLarge: boolean;
     readonly regionTooLargeReason: string;
 } & {
     regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
     regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
 } & {
-    featureIdUnderMouse: string | undefined;
-    contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
+    featureIdUnderMouse: undefined | string;
+    contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
 } & {
     readonly blockType: "dynamicBlocks" | "staticBlocks";
     readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -245,7 +236,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly renderDelay: number;
     readonly TooltipComponent: import("react").FC<any>;
     readonly selectedFeatureId: string | undefined;
-    readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+    readonly DisplayMessageComponent: undefined | import("react").FC<any>;
 } & {
     readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
     readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -258,8 +249,8 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     selectFeature(feature: import("@jbrowse/core/util").Feature): void;
     navToFeature(feature: import("@jbrowse/core/util").Feature): void;
     clearFeatureSelection(): void;
-    setFeatureIdUnderMouse(feature?: string | undefined): void;
-    setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
+    setFeatureIdUnderMouse(feature?: string): void;
+    setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
 } & {
     reload(): Promise<void>;
 } & {
@@ -301,7 +292,15 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     readonly rendererConfig: {
         [x: string]: any;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: unknown): any;
+        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+            [x: string]: any;
+        } & import("mobx-state-tree/dist/internal" /**
+         * #property
+         */).NonEmptyObject & {
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
+        } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
     } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
 } & {
     /**
@@ -332,7 +331,13 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         config: {
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
+                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                    [x: string]: any;
+                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
+            } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
         filters: SerializableFilterChain;
     };
@@ -370,7 +375,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
     }, {
         renderInProgress: AbortController | undefined;
         filled: boolean;
-        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+        reactElement: import("react").ReactElement | undefined;
         features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
         layout: any;
         status: string;
@@ -381,12 +386,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
             model: {
                 error?: unknown;
                 reload: () => void;
-                message: import("react").ReactNode; /**
-                 * #property
-                 */
-                filled?: boolean | undefined;
-                status?: string | undefined;
-                reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                message: import("react").ReactNode;
+                filled?: boolean;
+                status?: string;
+                reactElement?: import("react").ReactElement;
             };
         }) => import("react").JSX.Element | undefined;
         renderProps: any;
@@ -394,12 +397,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         doReload(): void;
         afterAttach(): void;
         setStatus(message: string): void;
-        setLoading(abortController: AbortController): void; /**
-         * #getter
-         */
+        setLoading(abortController: AbortController): void;
         setMessage(messageText: string): void;
         setRendered(props: {
-            reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+            reactElement: import("react").ReactElement;
             features: Map<string, import("@jbrowse/core/util").Feature>;
             layout: any;
             maxHeightReached: boolean;
@@ -427,9 +428,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
         };
         mouseover: {
             type: string;
-            description: string; /**
-             * #property
-             */
+            description: string;
             defaultValue: string;
             contextVariable: string[];
         };

package/dist/LinearGenomeView/components/ExportSvgDialog.js

@@ -23,6 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ExportSvgDialog;
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
@@ -84,4 +85,3 @@ function ExportSvgDialog({ model, handleClose, }) {
                     }
                 } }, "Submit"))));
 }
-exports.default = ExportSvgDialog;

package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = AutocompleteTextField;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 // locals
@@ -18,4 +19,3 @@ function AutocompleteTextField({ TextFieldProps, inputBoxVal, params, showHelp,
             endAdornment: (react_1.default.createElement(EndAdornment_1.default, { showHelp: showHelp, endAdornment: params.InputProps.endAdornment })),
         }, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
 }
-exports.default = AutocompleteTextField;

package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js

@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = EndAdornment;
 const react_1 = __importStar(require("react"));
 const material_1 = require("@mui/material");
 // icons
@@ -48,4 +49,3 @@ function EndAdornment({ showHelp, endAdornment, }) {
             showHelp ? react_1.default.createElement(HelpAdornment, null) : null),
         endAdornment));
 }
-exports.default = EndAdornment;

package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = HelpDialog;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const ui_1 = require("@jbrowse/core/ui");
@@ -45,4 +46,3 @@ function HelpDialog({ handleClose, }) {
         react_1.default.createElement(material_1.DialogActions, null,
             react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "primary" }, "Close"))));
 }
-exports.default = HelpDialog;

package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js

@@ -3,7 +3,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getDeduplicatedResult = exports.aggregateResults = exports.getFiltered = void 0;
+exports.getFiltered = getFiltered;
+exports.aggregateResults = aggregateResults;
+exports.getDeduplicatedResult = getDeduplicatedResult;
 const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
 // filter so don't need re-filtering
 function filterOptions(options, searchQuery) {
@@ -28,7 +30,6 @@ function getFiltered(opts, inputValue) {
             : []),
     ];
 }
-exports.getFiltered = getFiltered;
 function aggregateResults(results) {
     const m = {};
     for (const result of results) {
@@ -40,7 +41,6 @@ function aggregateResults(results) {
     }
     return m;
 }
-exports.aggregateResults = aggregateResults;
 function getDeduplicatedResult(results) {
     return Object.entries(aggregateResults(results)).map(([displayString, results]) => results.length === 1
         ? {
@@ -55,4 +55,3 @@ function getDeduplicatedResult(results) {
             }),
         });
 }
-exports.getDeduplicatedResult = getDeduplicatedResult;

package/dist/LinearGenomeView/components/RubberbandSpan.js

@@ -23,6 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
     return result;
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = RubberbandSpan;
 const react_1 = __importStar(require("react"));
 const mui_1 = require("tss-react/mui");
 const material_1 = require("@mui/material");
@@ -72,4 +73,3 @@ function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, wi
             (0, util_1.toLocale)(numOfBpSelected),
             " bp")) : null)));
 }
-exports.default = RubberbandSpan;

package/dist/LinearGenomeView/components/SearchResultsDialog.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SearchResultsDialog;
 const react_1 = __importDefault(require("react"));
 const ui_1 = require("@jbrowse/core/ui");
 const material_1 = require("@mui/material");
@@ -20,4 +21,3 @@ function SearchResultsDialog({ model, assemblyName, searchQuery, searchResults,
         react_1.default.createElement(material_1.DialogActions, null,
             react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "primary" }, "Cancel"))));
 }
-exports.default = SearchResultsDialog;

package/dist/LinearGenomeView/components/SearchResultsTable.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SearchResultsTable;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const mobx_state_tree_1 = require("mobx-state-tree");
@@ -79,4 +80,3 @@ function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, mode
                             handleClose();
                         }, color: "primary", variant: "contained" }, "Go")))))))));
 }
-exports.default = SearchResultsTable;

package/dist/LinearGenomeView/components/hooks.d.ts

@@ -42,7 +42,7 @@ export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement>, mod
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     rightBpOffset: {
         coord: number;
@@ -53,7 +53,7 @@ export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement>, mod
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     anchorPosition: AnchorPosition | undefined;
     numOfBpSelected: number;

package/dist/LinearGenomeView/components/hooks.js

@@ -1,6 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.useWheelScroll = exports.useRangeSelect = exports.useSideScroll = void 0;
+exports.useSideScroll = useSideScroll;
+exports.useRangeSelect = useRangeSelect;
+exports.useWheelScroll = useWheelScroll;
 const react_1 = require("react");
 const util_1 = require("./util");
 function useSideScroll(model) {
@@ -67,7 +69,6 @@ function useSideScroll(model) {
     }
     return { mouseDown, mouseUp };
 }
-exports.useSideScroll = useSideScroll;
 function useRangeSelect(ref, model, shiftOnly) {
     const [startX, setStartX] = (0, react_1.useState)();
     const [currentX, setCurrentX] = (0, react_1.useState)();
@@ -201,7 +202,6 @@ function useRangeSelect(ref, model, shiftOnly) {
         };
     }
 }
-exports.useRangeSelect = useRangeSelect;
 function useWheelScroll(ref, model) {
     const delta = (0, react_1.useRef)(0);
     const timeout = (0, react_1.useRef)();
@@ -255,4 +255,3 @@ function useWheelScroll(ref, model) {
         return () => { };
     }, [model, ref]);
 }
-exports.useWheelScroll = useWheelScroll;

package/dist/LinearGenomeView/components/util.js

@@ -3,7 +3,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getCytobands = exports.getRelativeX = exports.splitLast = exports.fetchResults = void 0;
+exports.fetchResults = fetchResults;
+exports.splitLast = splitLast;
+exports.getRelativeX = getRelativeX;
+exports.getCytobands = getCytobands;
 const util_1 = require("@jbrowse/core/util");
 const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
 async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
@@ -18,7 +21,6 @@ async function fetchResults({ queryString, searchType, searchScope, rankSearchRe
     const refNameResults = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _a === void 0 ? void 0 : _a.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase())).slice(0, 10).map(r => new BaseResults_1.default({ label: r }));
     return (0, util_1.dedupe)([...(refNameResults || []), ...(textSearchResults || [])], elt => elt.getId());
 }
-exports.fetchResults = fetchResults;
 // splits on the last instance of a character
 function splitLast(str, split) {
     const lastIndex = str.lastIndexOf(split);
@@ -31,11 +33,9 @@ function splitLast(str, split) {
         return [before, after];
     }
 }
-exports.splitLast = splitLast;
 function getRelativeX(event, element) {
     return event.clientX - ((element === null || element === void 0 ? void 0 : element.getBoundingClientRect().left) || 0);
 }
-exports.getRelativeX = getRelativeX;
 function getCytobands(assembly, refName) {
     var _a;
     return (((_a = assembly === null || assembly === void 0 ? void 0 : assembly.cytobands) === null || _a === void 0 ? void 0 : _a.map(f => ({
@@ -45,4 +45,3 @@ function getCytobands(assembly, refName) {
         type: f.get('type'),
     })).filter(f => f.refName === refName)) || []);
 }
-exports.getCytobands = getCytobands;

package/dist/LinearGenomeView/index.js

@@ -26,6 +26,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
     for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = LinearGenomeViewF;
 const react_1 = require("react");
 const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
 const model_1 = require("./model");
@@ -39,5 +40,4 @@ function LinearGenomeViewF(pluginManager) {
         });
     });
 }
-exports.default = LinearGenomeViewF;
 __exportStar(require("./model"), exports);

package/dist/LinearGenomeView/model.d.ts

@@ -85,15 +85,15 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
 } & {
     volatileWidth: number | undefined;
     minimumBlockWidth: number;
-    draggingTrackId: string | undefined;
+    draggingTrackId: undefined | string;
     volatileError: unknown;
     afterDisplayedRegionsSetCallbacks: Function[];
     scaleFactor: number;
     trackRefs: Record<string, HTMLDivElement>;
     coarseDynamicBlocks: BaseBlock[];
     coarseTotalBp: number;
-    leftOffset: BpOffset | undefined;
-    rightOffset: BpOffset | undefined;
+    leftOffset: undefined | BpOffset;
+    rightOffset: undefined | BpOffset;
 } & {
     /**
      * #getter
@@ -327,7 +327,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     /**
      * #action
      */
-    setTrackLabels(setting: 'overlapping' | 'offset' | 'hidden'): void;
+    setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
     /**
      * #action
      */
@@ -356,15 +356,15 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         start: number;
         end: number;
         type: string;
-        regionNumber?: number | undefined;
-        reversed?: boolean | undefined;
+        regionNumber?: number;
+        reversed?: boolean;
         refName: string;
         assemblyName: string;
         key: string;
         offsetPx: number;
         widthPx: number;
-        variant?: string | undefined;
-        isLeftEndOfDisplayedRegion?: boolean | undefined;
+        variant?: string;
+        isLeftEndOfDisplayedRegion?: boolean;
     }[];
     /**
      * #action
@@ -576,7 +576,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     };
     /**
      * #getter
@@ -590,7 +590,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
         offset: number;
         start: number;
         end: number;
-        reversed?: boolean | undefined;
+        reversed?: boolean;
     } | undefined;
 } & {
     afterCreate(): void;

package/dist/LinearGenomeView/model.js

@@ -26,7 +26,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.renderToSvg = exports.ZoomControls = exports.SearchBox = exports.RefNameAutocomplete = exports.LinearGenomeView = exports.ReactComponent = exports.stateModelFactory = exports.WIDGET_HEIGHT = exports.SPACING = exports.INTER_REGION_PADDING_WIDTH = exports.RESIZE_HANDLE_HEIGHT = exports.SCALE_BAR_HEIGHT = exports.HEADER_OVERVIEW_HEIGHT = exports.HEADER_BAR_HEIGHT = void 0;
+exports.renderToSvg = exports.ZoomControls = exports.SearchBox = exports.RefNameAutocomplete = exports.LinearGenomeView = exports.ReactComponent = exports.WIDGET_HEIGHT = exports.SPACING = exports.INTER_REGION_PADDING_WIDTH = exports.RESIZE_HANDLE_HEIGHT = exports.SCALE_BAR_HEIGHT = exports.HEADER_OVERVIEW_HEIGHT = exports.HEADER_BAR_HEIGHT = void 0;
+exports.stateModelFactory = stateModelFactory;
 const react_1 = require("react");
 const configuration_1 = require("@jbrowse/core/configuration");
 const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
@@ -1418,7 +1419,6 @@ function stateModelFactory(pluginManager) {
         };
     });
 }
-exports.stateModelFactory = stateModelFactory;
 var LinearGenomeView_1 = require("./components/LinearGenomeView");
 Object.defineProperty(exports, "ReactComponent", { enumerable: true, get: function () { return __importDefault(LinearGenomeView_1).default; } });
 Object.defineProperty(exports, "LinearGenomeView", { enumerable: true, get: function () { return __importDefault(LinearGenomeView_1).default; } });

package/dist/LinearGenomeView/svgcomponents/SVGBackground.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGBackground;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const util_1 = require("@jbrowse/core/util");
@@ -10,4 +11,3 @@ function SVGBackground({ width, height, shift, }) {
     const theme = (0, material_1.useTheme)();
     return (react_1.default.createElement("rect", { width: width + shift * 2, height: height, fill: (0, util_1.stripAlpha)(theme.palette.background.default) }));
 }
-exports.default = SVGBackground;

package/dist/LinearGenomeView/svgcomponents/SVGHeader.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGHeader;
 const react_1 = __importDefault(require("react"));
 const util_1 = require("@jbrowse/core/util");
 const Base1DViewModel_1 = __importDefault(require("@jbrowse/core/util/Base1DViewModel"));
@@ -55,4 +56,3 @@ function SVGHeader({ model, fontSize, cytobandHeight, rulerHeight, }) {
         react_1.default.createElement("g", { transform: `translate(0 ${rulerHeight + y})` },
             react_1.default.createElement(SVGRuler_1.default, { model: model, fontSize: fontSize }))));
 }
-exports.default = SVGHeader;

package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js

@@ -3,7 +3,8 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.SVGTracks = exports.SVGRuler = exports.renderToSvg = void 0;
+exports.SVGTracks = exports.SVGRuler = void 0;
+exports.renderToSvg = renderToSvg;
 /* eslint-disable react-refresh/only-export-components */
 const react_1 = __importDefault(require("react"));
 const mobx_1 = require("mobx");
@@ -48,7 +49,6 @@ async function renderToSvg(model, opts) {
                         react_1.default.createElement(SVGHeader_1.default, { model: model, fontSize: fontSize, rulerHeight: rulerHeight, cytobandHeight: cytobandHeight })),
                     react_1.default.createElement(SVGTracks_1.default, { textHeight: textHeight, fontSize: fontSize, model: model, displayResults: displayResults, offset: offset, trackLabels: trackLabels, trackLabelOffset: trackLabelOffset }))))), createRootFn);
 }
-exports.renderToSvg = renderToSvg;
 var SVGRuler_1 = require("./SVGRuler");
 Object.defineProperty(exports, "SVGRuler", { enumerable: true, get: function () { return __importDefault(SVGRuler_1).default; } });
 var SVGTracks_2 = require("./SVGTracks");

package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js

@@ -3,10 +3,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGRegionSeparators;
 const react_1 = __importDefault(require("react"));
 // SVG component, region separator
 function SVGRegionSeparators({ model, height, }) {
     const { dynamicBlocks, offsetPx, interRegionPaddingWidth } = model;
     return (react_1.default.createElement(react_1.default.Fragment, null, dynamicBlocks.contentBlocks.slice(1).map(block => (react_1.default.createElement("rect", { key: block.key, x: block.offsetPx - offsetPx - interRegionPaddingWidth, width: interRegionPaddingWidth, y: 0, height: height, fill: "grey" })))));
 }
-exports.default = SVGRegionSeparators;

package/dist/LinearGenomeView/svgcomponents/SVGRuler.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGRuler;
 const react_1 = __importDefault(require("react"));
 const util_1 = require("@jbrowse/core/util");
 const material_1 = require("@mui/material");
@@ -49,4 +50,3 @@ function SVGRuler({ model, fontSize, }) {
                             react_1.default.createElement(Ruler, { hideText: !renderRuler, start: start, end: end, bpPerPx: bpPerPx, reversed: reversed }))))));
         })));
 }
-exports.default = SVGRuler;

package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGScalebar;
 const react_1 = __importDefault(require("react"));
 const util_1 = require("@jbrowse/core/util");
 const material_1 = require("@mui/material");
@@ -21,4 +22,3 @@ function SVGScalebar({ model, fontSize, }) {
         react_1.default.createElement("line", { x1: x1, x2: x1, y1: 5, y2: 15, stroke: c }),
         react_1.default.createElement("text", { x: x, y: y, textAnchor: "middle", dominantBaseline: "hanging", fontSize: fontSize, fill: c }, displayBp)));
 }
-exports.default = SVGScalebar;