npm - @jbrowse/plugin-linear-genome-view - Versions diffs - 2.12.0 → 2.12.1 - Mend

@jbrowse/plugin-linear-genome-view 2.12.0 → 2.12.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (57) hide show

package/esm/index.d.ts CHANGED Viewed

@@ -1,599 +1,10 @@
-/// <reference types="react" />
 import Plugin from '@jbrowse/core/Plugin';
 import PluginManager from '@jbrowse/core/PluginManager';
 export default class LinearGenomeViewPlugin extends Plugin {
     name: string;
     exports: {
         BaseLinearDisplayComponent: (props: {
-            model: {
-                id: string;
-                type: string;
-                rpcDriverName: string | undefined;
-                heightPreConfig: number | undefined;
-                userBpPerPxLimit: number | undefined;
-                userByteSizeLimit: number | undefined;
-                blockState: import("mobx-state-tree").IMSTMap<import("mobx-state-tree").IModelType<{
-                    key: import("mobx-state-tree").ISimpleType<string>;
-                    region: import("mobx-state-tree").IModelType<{
-                        refName: import("mobx-state-tree").ISimpleType<string>;
-                        start: import("mobx-state-tree").ISimpleType<number>;
-                        end: import("mobx-state-tree").ISimpleType<number>;
-                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                    } & {
-                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                    }, {
-                        setRefName(newRefName: string): void;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                }, {
-                    renderInProgress: AbortController | undefined;
-                    filled: boolean;
-                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-                    layout: any;
-                    status: string;
-                    error: unknown;
-                    message: string | undefined;
-                    maxHeightReached: boolean;
-                    ReactComponent: ({ model, }: {
-                        model: {
-                            error?: unknown;
-                            reload: () => void;
-                            message: import("react").ReactNode;
-                            filled?: boolean | undefined;
-                            status?: string | undefined;
-                            reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                        };
-                    }) => import("react").JSX.Element | undefined;
-                    renderProps: any;
-                } & {
-                    doReload(): void;
-                    afterAttach(): void;
-                    setStatus(message: string): void;
-                    setLoading(abortController: AbortController): void;
-                    setMessage(messageText: string): void;
-                    setRendered(props: {
-                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
-                        features: Map<string, import("@jbrowse/core/util").Feature>;
-                        layout: any;
-                        maxHeightReached: boolean;
-                        renderProps: any;
-                    } | undefined): void;
-                    setError(error: unknown): void;
-                    reload(): void;
-                    beforeDestroy(): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-                    key: import("mobx-state-tree").ISimpleType<string>;
-                    region: import("mobx-state-tree").IModelType<{
-                        refName: import("mobx-state-tree").ISimpleType<string>;
-                        start: import("mobx-state-tree").ISimpleType<number>;
-                        end: import("mobx-state-tree").ISimpleType<number>;
-                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                    } & {
-                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                    }, {
-                        setRefName(newRefName: string): void;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                }, {
-                    renderInProgress: AbortController | undefined;
-                    filled: boolean;
-                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-                    layout: any;
-                    status: string;
-                    error: unknown;
-                    message: string | undefined;
-                    maxHeightReached: boolean;
-                    ReactComponent: ({ model, }: {
-                        model: {
-                            error?: unknown;
-                            reload: () => void;
-                            message: import("react").ReactNode;
-                            filled?: boolean | undefined;
-                            status?: string | undefined;
-                            reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                        };
-                    }) => import("react").JSX.Element | undefined;
-                    renderProps: any;
-                } & {
-                    doReload(): void;
-                    afterAttach(): void;
-                    setStatus(message: string): void;
-                    setLoading(abortController: AbortController): void;
-                    setMessage(messageText: string): void;
-                    setRendered(props: {
-                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
-                        features: Map<string, import("@jbrowse/core/util").Feature>;
-                        layout: any;
-                        maxHeightReached: boolean;
-                        renderProps: any;
-                    } | undefined): void;
-                    setError(error: unknown): void;
-                    reload(): void;
-                    beforeDestroy(): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
-                configuration: {
-                    [x: string]: any;
-                } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                    setSubschema(slotName: string, data: unknown): any;
-                } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                    maxFeatureScreenDensity: {
-                        type: string;
-                        description: string;
-                        defaultValue: number;
-                    };
-                    fetchSizeLimit: {
-                        type: string;
-                        defaultValue: number;
-                        description: string;
-                    };
-                    height: {
-                        type: string;
-                        defaultValue: number;
-                        description: string;
-                    };
-                    mouseover: {
-                        type: string;
-                        description: string;
-                        defaultValue: string;
-                        contextVariable: string[];
-                    };
-                    jexlFilters: {
-                        type: string;
-                        description: string;
-                        defaultValue: never[];
-                    };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>>;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                rendererTypeName: string;
-                error: unknown;
-                message: string | undefined;
-            } & {
-                readonly RenderingComponent: import("react").FC<{
-                    model: {
-                        id: string;
-                        type: string;
-                        rpcDriverName: string | undefined;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        rendererTypeName: string;
-                        error: unknown;
-                        message: string | undefined;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                        type: import("mobx-state-tree").ISimpleType<string>;
-                        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                    }, {
-                        rendererTypeName: string;
-                        error: unknown;
-                        message: string | undefined;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                    onHorizontalScroll?: Function | undefined;
-                    blockState?: Record<string, any> | undefined;
-                }>;
-                readonly DisplayBlurb: import("react").FC<{
-                    model: {
-                        id: string;
-                        type: string;
-                        rpcDriverName: string | undefined;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        rendererTypeName: string;
-                        error: unknown;
-                        message: string | undefined;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                        type: import("mobx-state-tree").ISimpleType<string>;
-                        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                    }, {
-                        rendererTypeName: string;
-                        error: unknown;
-                        message: string | undefined;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                }> | null;
-                readonly adapterConfig: any;
-                readonly parentTrack: any;
-                renderProps(): any;
-                readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-                readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-                trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-                regionCannotBeRendered(): null;
-            } & {
-                setMessage(arg?: string | undefined): void;
-                setError(error?: unknown): void;
-                setRpcDriverName(rpcDriverName: string): void;
-                reload(): void;
-            } & {
-                scrollTop: number;
-            } & {
-                readonly height: number;
-            } & {
-                setScrollTop(scrollTop: number): void;
-                setHeight(displayHeight: number): number;
-                resizeHeight(distance: number): number;
-            } & {
-                featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
-                featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined; /**
-                 * #slot configuration.LinearGenomeViewPlugin.trackLabels
-                 */
-                currStatsBpPerPx: number;
-            } & {
-                readonly currentBytesRequested: number;
-                readonly currentFeatureScreenDensity: number;
-                readonly maxFeatureScreenDensity: any;
-                readonly featureDensityStatsReady: boolean;
-                readonly maxAllowableBytes: number;
-            } & {
-                afterAttach(): void;
-            } & {
-                setCurrStatsBpPerPx(n: number): void;
-                setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
-                getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-                setFeatureDensityStatsP(arg: any): void;
-                setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
-                clearFeatureDensityStats(): void;
-            } & {
-                readonly regionTooLarge: boolean;
-                readonly regionTooLargeReason: string;
-            } & {
-                regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
-            } & {
-                featureIdUnderMouse: string | undefined;
-                contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            } & {
-                readonly blockType: "dynamicBlocks" | "staticBlocks";
-                readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
-            } & {
-                readonly renderDelay: number;
-                readonly TooltipComponent: import("react").FC<any>;
-                readonly selectedFeatureId: string | undefined;
-                readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-            } & {
-                readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
-                readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
-                getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
-                searchFeatureByID(id: string): [number, number, number, number] | undefined;
-            } & {
-                addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-                deleteBlock(key: string): void;
-                selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
-                clearFeatureSelection(): void;
-                setFeatureIdUnderMouse(feature?: string | undefined): void;
-                setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
-            } & {
-                reload(): Promise<void>;
-            } & {
-                trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                renderProps(): any;
-            } & {
-                renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
-                afterAttach(): void;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").ISimpleType<string>;
-                rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            } & {
-                heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            } & {
-                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            } & {
-                blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-                    key: import("mobx-state-tree").ISimpleType<string>;
-                    region: import("mobx-state-tree").IModelType<{
-                        refName: import("mobx-state-tree").ISimpleType<string>;
-                        start: import("mobx-state-tree").ISimpleType<number>;
-                        end: import("mobx-state-tree").ISimpleType<number>;
-                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                    } & {
-                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                    }, {
-                        setRefName(newRefName: string): void;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                }, {
-                    renderInProgress: AbortController | undefined;
-                    filled: boolean;
-                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-                    layout: any;
-                    status: string;
-                    error: unknown;
-                    message: string | undefined;
-                    maxHeightReached: boolean;
-                    ReactComponent: ({ model, }: {
-                        model: {
-                            error?: unknown;
-                            reload: () => void;
-                            message: import("react").ReactNode;
-                            filled?: boolean | undefined;
-                            status?: string | undefined;
-                            reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                        };
-                    }) => import("react").JSX.Element | undefined;
-                    renderProps: any;
-                } & {
-                    doReload(): void;
-                    afterAttach(): void;
-                    setStatus(message: string): void;
-                    setLoading(abortController: AbortController): void;
-                    setMessage(messageText: string): void;
-                    setRendered(props: {
-                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
-                        features: Map<string, import("@jbrowse/core/util").Feature>;
-                        layout: any;
-                        maxHeightReached: boolean;
-                        renderProps: any;
-                    } | undefined): void;
-                    setError(error: unknown): void;
-                    reload(): void;
-                    beforeDestroy(): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                    maxFeatureScreenDensity: {
-                        type: string;
-                        description: string;
-                        defaultValue: number;
-                    };
-                    fetchSizeLimit: {
-                        type: string;
-                        defaultValue: number;
-                        description: string;
-                    };
-                    height: {
-                        type: string;
-                        defaultValue: number;
-                        description: string;
-                    };
-                    mouseover: {
-                        type: string;
-                        description: string;
-                        defaultValue: string;
-                        contextVariable: string[];
-                    };
-                    jexlFilters: {
-                        type: string;
-                        description: string;
-                        defaultValue: never[];
-                    };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-            }, {
-                rendererTypeName: string;
-                error: unknown;
-                message: string | undefined;
-            } & {
-                readonly RenderingComponent: import("react").FC<{
-                    model: {
-                        id: string;
-                        type: string;
-                        rpcDriverName: string | undefined;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        rendererTypeName: string;
-                        error: unknown;
-                        message: string | undefined;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                        type: import("mobx-state-tree").ISimpleType<string>;
-                        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                    }, {
-                        rendererTypeName: string;
-                        error: unknown;
-                        message: string | undefined;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                    onHorizontalScroll?: Function | undefined;
-                    blockState?: Record<string, any> | undefined;
-                }>;
-                readonly DisplayBlurb: import("react").FC<{
-                    model: {
-                        id: string;
-                        type: string;
-                        rpcDriverName: string | undefined;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        rendererTypeName: string;
-                        error: unknown;
-                        message: string | undefined;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                        type: import("mobx-state-tree").ISimpleType<string>;
-                        rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                    }, {
-                        rendererTypeName: string;
-                        error: unknown;
-                        message: string | undefined;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                }> | null;
-                readonly adapterConfig: any;
-                readonly parentTrack: any;
-                renderProps(): any;
-                readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-                readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-                trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
-                regionCannotBeRendered(): null;
-            } & {
-                setMessage(arg?: string | undefined): void;
-                setError(error?: unknown): void;
-                setRpcDriverName(rpcDriverName: string): void;
-                reload(): void;
-            } & {
-                scrollTop: number;
-            } & {
-                readonly height: number;
-            } & {
-                setScrollTop(scrollTop: number): void;
-                setHeight(displayHeight: number): number;
-                resizeHeight(distance: number): number;
-            } & {
-                featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
-                featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined; /**
-                 * #slot configuration.LinearGenomeViewPlugin.trackLabels
-                 */
-                currStatsBpPerPx: number;
-            } & {
-                readonly currentBytesRequested: number;
-                readonly currentFeatureScreenDensity: number;
-                readonly maxFeatureScreenDensity: any;
-                readonly featureDensityStatsReady: boolean;
-                readonly maxAllowableBytes: number;
-            } & {
-                afterAttach(): void;
-            } & {
-                setCurrStatsBpPerPx(n: number): void;
-                setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
-                getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
-                setFeatureDensityStatsP(arg: any): void;
-                setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
-                clearFeatureDensityStats(): void;
-            } & {
-                readonly regionTooLarge: boolean;
-                readonly regionTooLargeReason: string;
-            } & {
-                regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
-                regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
-            } & {
-                featureIdUnderMouse: string | undefined;
-                contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
-            } & {
-                readonly blockType: "dynamicBlocks" | "staticBlocks";
-                readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
-            } & {
-                readonly renderDelay: number;
-                readonly TooltipComponent: import("react").FC<any>;
-                readonly selectedFeatureId: string | undefined;
-                readonly DisplayMessageComponent: import("react").FC<any> | undefined;
-            } & {
-                readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
-                readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
-                getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined;
-                getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined;
-                searchFeatureByID(id: string): [number, number, number, number] | undefined;
-            } & {
-                addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void;
-                deleteBlock(key: string): void;
-                selectFeature(feature: import("@jbrowse/core/util").Feature): void;
-                navToFeature(feature: import("@jbrowse/core/util").Feature): void;
-                clearFeatureSelection(): void;
-                setFeatureIdUnderMouse(feature?: string | undefined): void;
-                setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
-            } & {
-                reload(): Promise<void>;
-            } & {
-                trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                contextMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                renderProps(): any;
-            } & {
-                renderSvg(opts: import("./BaseLinearDisplay").ExportSvgDisplayOptions): Promise<import("react").JSX.Element>;
-                afterAttach(): void;
-            }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").ISimpleType<string>;
-                rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-            } & {
-                heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            } & {
-                userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-                userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
-            } & {
-                blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{
-                    key: import("mobx-state-tree").ISimpleType<string>;
-                    region: import("mobx-state-tree").IModelType<{
-                        refName: import("mobx-state-tree").ISimpleType<string>;
-                        start: import("mobx-state-tree").ISimpleType<number>;
-                        end: import("mobx-state-tree").ISimpleType<number>;
-                        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                    } & {
-                        assemblyName: import("mobx-state-tree").ISimpleType<string>;
-                    }, {
-                        setRefName(newRefName: string): void;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-                    reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>;
-                    isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                    isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                }, {
-                    renderInProgress: AbortController | undefined;
-                    filled: boolean;
-                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                    features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
-                    layout: any;
-                    status: string;
-                    error: unknown;
-                    message: string | undefined;
-                    maxHeightReached: boolean;
-                    ReactComponent: ({ model, }: {
-                        model: {
-                            error?: unknown;
-                            reload: () => void;
-                            message: import("react").ReactNode;
-                            filled?: boolean | undefined;
-                            status?: string | undefined;
-                            reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
-                        };
-                    }) => import("react").JSX.Element | undefined;
-                    renderProps: any;
-                } & {
-                    doReload(): void;
-                    afterAttach(): void;
-                    setStatus(message: string): void;
-                    setLoading(abortController: AbortController): void;
-                    setMessage(messageText: string): void;
-                    setRendered(props: {
-                        reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
-                        features: Map<string, import("@jbrowse/core/util").Feature>;
-                        layout: any;
-                        maxHeightReached: boolean;
-                        renderProps: any;
-                    } | undefined): void;
-                    setError(error: unknown): void;
-                    reload(): void;
-                    beforeDestroy(): void;
-                }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{
-                    maxFeatureScreenDensity: {
-                        type: string;
-                        description: string;
-                        defaultValue: number;
-                    };
-                    fetchSizeLimit: {
-                        type: string;
-                        defaultValue: number;
-                        description: string;
-                    };
-                    height: {
-                        type: string;
-                        defaultValue: number;
-                        description: string;
-                    };
-                    mouseover: {
-                        type: string;
-                        description: string;
-                        defaultValue: string;
-                        contextVariable: string[];
-                    };
-                    jexlFilters: {
-                        type: string;
-                        description: string;
-                        defaultValue: never[];
-                    };
-                }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
-            }>>, {
-                type: string;
-                id: string;
-                configuration: import("mobx-state-tree").ModelSnapshotType<Record<string, any>>;
-                rpcDriverName: string | undefined;
-                heightPreConfig: number | undefined;
-                userBpPerPxLimit: number | undefined;
-                userByteSizeLimit: number | undefined;
-            }>>;
+            model: import("./BaseLinearDisplay").BaseLinearDisplayModel;
             children?: import("react").ReactNode;
         }) => import("react").JSX.Element;
         BaseLinearDisplay: import("mobx-state-tree").IModelType<{
@@ -624,7 +35,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             }, {
                 renderInProgress: AbortController | undefined;
                 filled: boolean;
-                reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                reactElement: import("react").ReactElement | undefined;
                 features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
                 layout: any;
                 status: string;
@@ -636,9 +47,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         error?: unknown;
                         reload: () => void;
                         message: import("react").ReactNode;
-                        filled?: boolean | undefined;
-                        status?: string | undefined;
-                        reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                        filled?: boolean;
+                        status?: string;
+                        reactElement?: import("react").ReactElement;
                     };
                 }) => import("react").JSX.Element | undefined;
                 renderProps: any;
@@ -649,7 +60,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setLoading(abortController: AbortController): void;
                 setMessage(messageText: string): void;
                 setRendered(props: {
-                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                    reactElement: import("react").ReactElement;
                     features: Map<string, import("@jbrowse/core/util").Feature>;
                     layout: any;
                     maxHeightReached: boolean;
@@ -702,7 +113,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     error: unknown;
                     message: string | undefined;
                 } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
+                    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree" /**
+                     * #slot configuration.LinearGenomeViewPlugin.trackLabels
+                     */).ISimpleType<string>, [undefined]>;
                     type: import("mobx-state-tree").ISimpleType<string>;
                     rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
                 }, {
@@ -710,8 +123,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     error: unknown;
                     message: string | undefined;
                 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                onHorizontalScroll?: Function | undefined;
-                blockState?: Record<string, any> | undefined;
+                onHorizontalScroll?: Function;
+                blockState?: Record<string, any>;
             }>;
             readonly DisplayBlurb: import("react").FC<{
                 model: {
@@ -736,12 +149,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly parentTrack: any;
             renderProps(): any;
             readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
-            readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+            readonly DisplayMessageComponent: undefined | import("react").FC<any>;
             trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
             readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
             regionCannotBeRendered(): null;
         } & {
-            setMessage(arg?: string | undefined): void;
+            setMessage(arg?: string): void;
             setError(error?: unknown): void;
             setRpcDriverName(rpcDriverName: string): void;
             reload(): void;
@@ -754,10 +167,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
             setHeight(displayHeight: number): number;
             resizeHeight(distance: number): number;
         } & {
-            featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
-            featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined; /**
-             * #slot configuration.LinearGenomeViewPlugin.trackLabels
-             */
+            featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
+            featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
             currStatsBpPerPx: number;
         } & {
             readonly currentBytesRequested: number;
@@ -769,10 +180,10 @@ export default class LinearGenomeViewPlugin extends Plugin {
             afterAttach(): void;
         } & {
             setCurrStatsBpPerPx(n: number): void;
-            setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+            setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
             getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
             setFeatureDensityStatsP(arg: any): void;
-            setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
+            setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
             clearFeatureDensityStats(): void;
         } & {
             readonly regionTooLarge: boolean;
@@ -781,8 +192,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
             regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
             regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
         } & {
-            featureIdUnderMouse: string | undefined;
-            contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
+            featureIdUnderMouse: undefined | string;
+            contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
         } & {
             readonly blockType: "dynamicBlocks" | "staticBlocks";
             readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -790,7 +201,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             readonly renderDelay: number;
             readonly TooltipComponent: import("react").FC<any>;
             readonly selectedFeatureId: string | undefined;
-            readonly DisplayMessageComponent: import("react").FC<any> | undefined;
+            readonly DisplayMessageComponent: undefined | import("react").FC<any>;
         } & {
             readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
             readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -803,8 +214,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
             selectFeature(feature: import("@jbrowse/core/util").Feature): void;
             navToFeature(feature: import("@jbrowse/core/util").Feature): void;
             clearFeatureSelection(): void;
-            setFeatureIdUnderMouse(feature?: string | undefined): void;
-            setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
+            setFeatureIdUnderMouse(feature?: string): void;
+            setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
         } & {
             reload(): Promise<void>;
         } & {
@@ -842,7 +253,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
             }, {
                 renderInProgress: AbortController | undefined;
                 filled: boolean;
-                reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                reactElement: import("react").ReactElement | undefined;
                 features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
                 layout: any;
                 status: string;
@@ -854,9 +265,9 @@ export default class LinearGenomeViewPlugin extends Plugin {
                         error?: unknown;
                         reload: () => void;
                         message: import("react").ReactNode;
-                        filled?: boolean | undefined;
-                        status?: string | undefined;
-                        reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
+                        filled?: boolean;
+                        status?: string;
+                        reactElement?: import("react").ReactElement;
                     };
                 }) => import("react").JSX.Element | undefined;
                 renderProps: any;
@@ -867,7 +278,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setLoading(abortController: AbortController): void;
                 setMessage(messageText: string): void;
                 setRendered(props: {
-                    reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
+                    reactElement: import("react").ReactElement;
                     features: Map<string, import("@jbrowse/core/util").Feature>;
                     layout: any;
                     maxHeightReached: boolean;
@@ -943,1333 +354,11 @@ export default class LinearGenomeViewPlugin extends Plugin {
             };
         }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>;
         SearchBox: ({ model, showHelp, }: {
-            showHelp?: boolean | undefined;
-            model: {
-                id: string;
-                displayName: string | undefined;
-                minimized: boolean;
-                type: string;
-                offsetPx: number;
-                bpPerPx: number;
-                displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
-                tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                hideHeader: boolean;
-                hideHeaderOverview: boolean;
-                hideNoTracksActive: boolean;
-                trackSelectorType: string;
-                showCenterLine: boolean;
-                showCytobandsSetting: boolean;
-                trackLabels: string;
-                showGridlines: boolean;
-                highlight: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>>;
-                colorByCDS: boolean;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                width: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                setDisplayName(name: string): void;
-                setWidth(newWidth: number): void;
-                setMinimized(flag: boolean): void; /**
-                 * #slot configuration.LinearGenomeViewPlugin.trackLabels
-                 */
-            } & {
-                volatileWidth: number | undefined;
-                minimumBlockWidth: number;
-                draggingTrackId: string | undefined;
-                volatileError: unknown;
-                afterDisplayedRegionsSetCallbacks: Function[];
-                scaleFactor: number;
-                trackRefs: Record<string, HTMLDivElement>;
-                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                coarseTotalBp: number;
-                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
-                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-            } & {
-                readonly trackLabelsSetting: any;
-                readonly width: number;
-                readonly interRegionPaddingWidth: number;
-                readonly assemblyNames: string[];
-            } & {
-                MiniControlsComponent(): import("react").FC<any>;
-                HeaderComponent(): import("react").FC<any>;
-                readonly assemblyErrors: string;
-                readonly assembliesInitialized: boolean;
-                readonly initialized: boolean;
-                readonly hasDisplayedRegions: boolean;
-                readonly scaleBarHeight: number;
-                readonly headerHeight: number;
-                readonly trackHeights: number;
-                readonly trackHeightsWithResizeHandles: number;
-                readonly height: number;
-                readonly totalBp: number;
-                readonly maxBpPerPx: number;
-                readonly minBpPerPx: number;
-                readonly error: {};
-                readonly maxOffset: number;
-                readonly minOffset: number;
-                readonly displayedRegionsTotalPx: number;
-                renderProps(): any;
-                searchScope(assemblyName: string): {
-                    assemblyName: string;
-                    includeAggregateIndexes: boolean;
-                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                };
-                getTrack(id: string): any;
-                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-            } & {
-                setColorByCDS(flag: boolean): void;
-                setShowCytobands(flag: boolean): void;
-                setWidth(newWidth: number): void;
-                setError(error: unknown): void;
-                setHideHeader(b: boolean): void;
-                setHideHeaderOverview(b: boolean): void;
-                setHideNoTracksActive(b: boolean): void;
-                setShowGridlines(b: boolean): void;
-                addToHighlights(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>[] | undefined): void;
-                removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
-                setNewView(bpPerPx: number, offsetPx: number): void;
-                horizontallyFlip(): void;
-                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-                hideTrack(trackId: string): number;
-            } & {
-                moveTrackDown(id: string): void;
-                moveTrackUp(id: string): void;
-                moveTrackToTop(id: string): void;
-                moveTrackToBottom(id: string): void;
-                moveTrack(movingId: string, targetId: string): void;
-                closeView(): void;
-                toggleTrack(trackId: string): boolean;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                setShowCenterLine(b: boolean): void;
-                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                activateTrackSelector(): import("@jbrowse/core/util").Widget;
-                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
-                    start: number;
-                    end: number;
-                    type: string;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
-                afterDisplayedRegionsSet(cb: Function): void;
-                horizontalScroll(distance: number): number;
-                center(): void;
-                showAllRegions(): void;
-                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-                setDraggingTrackId(idx?: string | undefined): void;
-                setScaleFactor(factor: number): void;
-                clearView(): void;
-                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
-            } & {
-                slide: (viewWidths: number) => void;
-            } & {
-                zoom: (targetBpPerPx: number) => void;
-            } & {
-                readonly canShowCytobands: boolean;
-                readonly showCytobands: boolean;
-                readonly anyCytobandsExist: boolean;
-                readonly cytobandOffset: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                readonly visibleLocStrings: string;
-                readonly coarseVisibleLocStrings: string;
-            } & {
-                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-                afterAttach(): void;
-            } & {
-                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
-                navToSearchString({ input, assembly, }: {
-                    input: string;
-                    assembly: {
-                        configuration: any;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-                    }, {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                }): Promise<void>;
-                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
-                navTo(query: import("./LinearGenomeView").NavLocation): void;
-                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
-            } & {
-                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                bpToPx({ refName, coord, regionNumber, }: {
-                    refName: string;
-                    coord: number;
-                    regionNumber?: number | undefined;
-                }): {
-                    index: number;
-                    offsetPx: number;
-                } | undefined;
-                centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
-                pxToBp(px: number): {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean | undefined;
-                };
-                readonly centerLineInfo: {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean | undefined;
-                } | undefined;
-            } & {
-                afterCreate(): void;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            } & {
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").IType<string | undefined, string, string>;
-                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-                colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-            }, {
-                width: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                setDisplayName(name: string): void;
-                setWidth(newWidth: number): void;
-                setMinimized(flag: boolean): void; /**
-                 * #slot configuration.LinearGenomeViewPlugin.trackLabels
-                 */
-            } & {
-                volatileWidth: number | undefined;
-                minimumBlockWidth: number;
-                draggingTrackId: string | undefined;
-                volatileError: unknown;
-                afterDisplayedRegionsSetCallbacks: Function[];
-                scaleFactor: number;
-                trackRefs: Record<string, HTMLDivElement>;
-                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                coarseTotalBp: number;
-                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
-                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-            } & {
-                readonly trackLabelsSetting: any;
-                readonly width: number;
-                readonly interRegionPaddingWidth: number;
-                readonly assemblyNames: string[];
-            } & {
-                MiniControlsComponent(): import("react").FC<any>;
-                HeaderComponent(): import("react").FC<any>;
-                readonly assemblyErrors: string;
-                readonly assembliesInitialized: boolean;
-                readonly initialized: boolean;
-                readonly hasDisplayedRegions: boolean;
-                readonly scaleBarHeight: number;
-                readonly headerHeight: number;
-                readonly trackHeights: number;
-                readonly trackHeightsWithResizeHandles: number;
-                readonly height: number;
-                readonly totalBp: number;
-                readonly maxBpPerPx: number;
-                readonly minBpPerPx: number;
-                readonly error: {};
-                readonly maxOffset: number;
-                readonly minOffset: number;
-                readonly displayedRegionsTotalPx: number;
-                renderProps(): any;
-                searchScope(assemblyName: string): {
-                    assemblyName: string;
-                    includeAggregateIndexes: boolean;
-                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                };
-                getTrack(id: string): any;
-                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-            } & {
-                setColorByCDS(flag: boolean): void;
-                setShowCytobands(flag: boolean): void;
-                setWidth(newWidth: number): void;
-                setError(error: unknown): void;
-                setHideHeader(b: boolean): void;
-                setHideHeaderOverview(b: boolean): void;
-                setHideNoTracksActive(b: boolean): void;
-                setShowGridlines(b: boolean): void;
-                addToHighlights(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>[] | undefined): void;
-                removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
-                setNewView(bpPerPx: number, offsetPx: number): void;
-                horizontallyFlip(): void;
-                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-                hideTrack(trackId: string): number;
-            } & {
-                moveTrackDown(id: string): void;
-                moveTrackUp(id: string): void;
-                moveTrackToTop(id: string): void;
-                moveTrackToBottom(id: string): void;
-                moveTrack(movingId: string, targetId: string): void;
-                closeView(): void;
-                toggleTrack(trackId: string): boolean;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                setShowCenterLine(b: boolean): void;
-                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                activateTrackSelector(): import("@jbrowse/core/util").Widget;
-                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
-                    start: number;
-                    end: number;
-                    type: string;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
-                afterDisplayedRegionsSet(cb: Function): void;
-                horizontalScroll(distance: number): number;
-                center(): void;
-                showAllRegions(): void;
-                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-                setDraggingTrackId(idx?: string | undefined): void;
-                setScaleFactor(factor: number): void;
-                clearView(): void;
-                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
-            } & {
-                slide: (viewWidths: number) => void;
-            } & {
-                zoom: (targetBpPerPx: number) => void;
-            } & {
-                readonly canShowCytobands: boolean;
-                readonly showCytobands: boolean;
-                readonly anyCytobandsExist: boolean;
-                readonly cytobandOffset: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                readonly visibleLocStrings: string;
-                readonly coarseVisibleLocStrings: string;
-            } & {
-                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-                afterAttach(): void;
-            } & {
-                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
-                navToSearchString({ input, assembly, }: {
-                    input: string;
-                    assembly: {
-                        configuration: any;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-                    }, {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                }): Promise<void>;
-                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
-                navTo(query: import("./LinearGenomeView").NavLocation): void;
-                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
-            } & {
-                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                bpToPx({ refName, coord, regionNumber, }: {
-                    refName: string;
-                    coord: number;
-                    regionNumber?: number | undefined;
-                }): {
-                    index: number;
-                    offsetPx: number;
-                } | undefined;
-                centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
-                pxToBp(px: number): {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean | undefined;
-                };
-                readonly centerLineInfo: {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean | undefined;
-                } | undefined;
-            } & {
-                afterCreate(): void;
-            }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            } & {
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").IType<string | undefined, string, string>;
-                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-                colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-            }>>, import("mobx-state-tree")._NotCustomized>>;
+            showHelp?: boolean;
+            model: import("./LinearGenomeView").LinearGenomeViewModel;
         }) => import("react").JSX.Element;
         ZoomControls: ({ model, }: {
-            model: {
-                id: string;
-                displayName: string | undefined;
-                minimized: boolean;
-                type: string;
-                offsetPx: number;
-                bpPerPx: number;
-                displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
-                tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                hideHeader: boolean;
-                hideHeaderOverview: boolean;
-                hideNoTracksActive: boolean;
-                trackSelectorType: string;
-                showCenterLine: boolean;
-                showCytobandsSetting: boolean;
-                trackLabels: string;
-                showGridlines: boolean;
-                highlight: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>>;
-                colorByCDS: boolean;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                width: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                setDisplayName(name: string): void;
-                setWidth(newWidth: number): void;
-                setMinimized(flag: boolean): void; /**
-                 * #slot configuration.LinearGenomeViewPlugin.trackLabels
-                 */
-            } & {
-                volatileWidth: number | undefined;
-                minimumBlockWidth: number;
-                draggingTrackId: string | undefined;
-                volatileError: unknown;
-                afterDisplayedRegionsSetCallbacks: Function[];
-                scaleFactor: number;
-                trackRefs: Record<string, HTMLDivElement>;
-                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                coarseTotalBp: number;
-                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
-                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-            } & {
-                readonly trackLabelsSetting: any;
-                readonly width: number;
-                readonly interRegionPaddingWidth: number;
-                readonly assemblyNames: string[];
-            } & {
-                MiniControlsComponent(): import("react").FC<any>;
-                HeaderComponent(): import("react").FC<any>;
-                readonly assemblyErrors: string;
-                readonly assembliesInitialized: boolean;
-                readonly initialized: boolean;
-                readonly hasDisplayedRegions: boolean;
-                readonly scaleBarHeight: number;
-                readonly headerHeight: number;
-                readonly trackHeights: number;
-                readonly trackHeightsWithResizeHandles: number;
-                readonly height: number;
-                readonly totalBp: number;
-                readonly maxBpPerPx: number;
-                readonly minBpPerPx: number;
-                readonly error: {};
-                readonly maxOffset: number;
-                readonly minOffset: number;
-                readonly displayedRegionsTotalPx: number;
-                renderProps(): any;
-                searchScope(assemblyName: string): {
-                    assemblyName: string;
-                    includeAggregateIndexes: boolean;
-                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                };
-                getTrack(id: string): any;
-                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-            } & {
-                setColorByCDS(flag: boolean): void;
-                setShowCytobands(flag: boolean): void;
-                setWidth(newWidth: number): void;
-                setError(error: unknown): void;
-                setHideHeader(b: boolean): void;
-                setHideHeaderOverview(b: boolean): void;
-                setHideNoTracksActive(b: boolean): void;
-                setShowGridlines(b: boolean): void;
-                addToHighlights(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>[] | undefined): void;
-                removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
-                setNewView(bpPerPx: number, offsetPx: number): void;
-                horizontallyFlip(): void;
-                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-                hideTrack(trackId: string): number;
-            } & {
-                moveTrackDown(id: string): void;
-                moveTrackUp(id: string): void;
-                moveTrackToTop(id: string): void;
-                moveTrackToBottom(id: string): void;
-                moveTrack(movingId: string, targetId: string): void;
-                closeView(): void;
-                toggleTrack(trackId: string): boolean;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                setShowCenterLine(b: boolean): void;
-                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                activateTrackSelector(): import("@jbrowse/core/util").Widget;
-                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
-                    start: number;
-                    end: number;
-                    type: string;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
-                afterDisplayedRegionsSet(cb: Function): void;
-                horizontalScroll(distance: number): number;
-                center(): void;
-                showAllRegions(): void;
-                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-                setDraggingTrackId(idx?: string | undefined): void;
-                setScaleFactor(factor: number): void;
-                clearView(): void;
-                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
-            } & {
-                slide: (viewWidths: number) => void;
-            } & {
-                zoom: (targetBpPerPx: number) => void;
-            } & {
-                readonly canShowCytobands: boolean;
-                readonly showCytobands: boolean;
-                readonly anyCytobandsExist: boolean;
-                readonly cytobandOffset: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                readonly visibleLocStrings: string;
-                readonly coarseVisibleLocStrings: string;
-            } & {
-                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-                afterAttach(): void;
-            } & {
-                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
-                navToSearchString({ input, assembly, }: {
-                    input: string;
-                    assembly: {
-                        configuration: any;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-                    }, {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                }): Promise<void>;
-                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
-                navTo(query: import("./LinearGenomeView").NavLocation): void;
-                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
-            } & {
-                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                bpToPx({ refName, coord, regionNumber, }: {
-                    refName: string;
-                    coord: number;
-                    regionNumber?: number | undefined;
-                }): {
-                    index: number;
-                    offsetPx: number;
-                } | undefined;
-                centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
-                pxToBp(px: number): {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean | undefined;
-                };
-                readonly centerLineInfo: {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean | undefined;
-                } | undefined;
-            } & {
-                afterCreate(): void;
-            } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            } & {
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").IType<string | undefined, string, string>;
-                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-                colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-            }, {
-                width: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                setDisplayName(name: string): void;
-                setWidth(newWidth: number): void;
-                setMinimized(flag: boolean): void; /**
-                 * #slot configuration.LinearGenomeViewPlugin.trackLabels
-                 */
-            } & {
-                volatileWidth: number | undefined;
-                minimumBlockWidth: number;
-                draggingTrackId: string | undefined;
-                volatileError: unknown;
-                afterDisplayedRegionsSetCallbacks: Function[];
-                scaleFactor: number;
-                trackRefs: Record<string, HTMLDivElement>;
-                coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                coarseTotalBp: number;
-                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
-                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
-            } & {
-                readonly trackLabelsSetting: any;
-                readonly width: number;
-                readonly interRegionPaddingWidth: number;
-                readonly assemblyNames: string[];
-            } & {
-                MiniControlsComponent(): import("react").FC<any>;
-                HeaderComponent(): import("react").FC<any>;
-                readonly assemblyErrors: string;
-                readonly assembliesInitialized: boolean;
-                readonly initialized: boolean;
-                readonly hasDisplayedRegions: boolean;
-                readonly scaleBarHeight: number;
-                readonly headerHeight: number;
-                readonly trackHeights: number;
-                readonly trackHeightsWithResizeHandles: number;
-                readonly height: number;
-                readonly totalBp: number;
-                readonly maxBpPerPx: number;
-                readonly minBpPerPx: number;
-                readonly error: {};
-                readonly maxOffset: number;
-                readonly minOffset: number;
-                readonly displayedRegionsTotalPx: number;
-                renderProps(): any;
-                searchScope(assemblyName: string): {
-                    assemblyName: string;
-                    includeAggregateIndexes: boolean;
-                    tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-                };
-                getTrack(id: string): any;
-                rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-                rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-                readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-            } & {
-                setColorByCDS(flag: boolean): void;
-                setShowCytobands(flag: boolean): void;
-                setWidth(newWidth: number): void;
-                setError(error: unknown): void;
-                setHideHeader(b: boolean): void;
-                setHideHeaderOverview(b: boolean): void;
-                setHideNoTracksActive(b: boolean): void;
-                setShowGridlines(b: boolean): void;
-                addToHighlights(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                setHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>[] | undefined): void;
-                removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
-                scrollTo(offsetPx: number): number;
-                zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
-                setNewView(bpPerPx: number, offsetPx: number): void;
-                horizontallyFlip(): void;
-                showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-                hideTrack(trackId: string): number;
-            } & {
-                moveTrackDown(id: string): void;
-                moveTrackUp(id: string): void;
-                moveTrackToTop(id: string): void;
-                moveTrackToBottom(id: string): void;
-                moveTrack(movingId: string, targetId: string): void;
-                closeView(): void;
-                toggleTrack(trackId: string): boolean;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
-                setShowCenterLine(b: boolean): void;
-                setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                activateTrackSelector(): import("@jbrowse/core/util").Widget;
-                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
-                    start: number;
-                    end: number;
-                    type: string;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
-                    refName: string;
-                    assemblyName: string;
-                    key: string;
-                    offsetPx: number;
-                    widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
-                }[];
-                afterDisplayedRegionsSet(cb: Function): void;
-                horizontalScroll(distance: number): number;
-                center(): void;
-                showAllRegions(): void;
-                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-                setDraggingTrackId(idx?: string | undefined): void;
-                setScaleFactor(factor: number): void;
-                clearView(): void;
-                exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
-            } & {
-                slide: (viewWidths: number) => void;
-            } & {
-                zoom: (targetBpPerPx: number) => void;
-            } & {
-                readonly canShowCytobands: boolean;
-                readonly showCytobands: boolean;
-                readonly anyCytobandsExist: boolean;
-                readonly cytobandOffset: number;
-            } & {
-                menuItems(): import("@jbrowse/core/ui").MenuItem[];
-            } & {
-                readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-                readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-                readonly visibleLocStrings: string;
-                readonly coarseVisibleLocStrings: string;
-            } & {
-                setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-                afterAttach(): void;
-            } & {
-                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
-                navToSearchString({ input, assembly, }: {
-                    input: string;
-                    assembly: {
-                        configuration: any;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-                    }, {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-                }): Promise<void>;
-                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
-                navTo(query: import("./LinearGenomeView").NavLocation): void;
-                navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
-            } & {
-                rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-                bpToPx({ refName, coord, regionNumber, }: {
-                    refName: string;
-                    coord: number;
-                    regionNumber?: number | undefined;
-                }): {
-                    index: number;
-                    offsetPx: number;
-                } | undefined;
-                centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
-                pxToBp(px: number): {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean | undefined;
-                };
-                readonly centerLineInfo: {
-                    coord: number;
-                    index: number;
-                    refName: string;
-                    oob: boolean;
-                    assemblyName: string;
-                    offset: number;
-                    start: number;
-                    end: number;
-                    reversed?: boolean | undefined;
-                } | undefined;
-            } & {
-                afterCreate(): void;
-            }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-                minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-            } & {
-                id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                type: import("mobx-state-tree").IType<string | undefined, string, string>;
-                offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-                displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-                tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-                hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-                trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-                showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-                highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>, Required<import("@jbrowse/core/util").ParsedLocString>>>, [undefined]>;
-                colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-            }>>, import("mobx-state-tree")._NotCustomized>>;
+            model: import("./LinearGenomeView").LinearGenomeViewModel;
         }) => import("react").JSX.Element;
         LinearGenomeView: ({ model }: {
             model: {
@@ -2298,21 +387,19 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 setDisplayName(name: string): void;
                 setWidth(newWidth: number): void;
-                setMinimized(flag: boolean): void; /**
-                 * #slot configuration.LinearGenomeViewPlugin.trackLabels
-                 */
+                setMinimized(flag: boolean): void;
             } & {
                 volatileWidth: number | undefined;
                 minimumBlockWidth: number;
-                draggingTrackId: string | undefined;
+                draggingTrackId: undefined | string;
                 volatileError: unknown;
                 afterDisplayedRegionsSetCallbacks: Function[];
                 scaleFactor: number;
                 trackRefs: Record<string, HTMLDivElement>;
                 coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 coarseTotalBp: number;
-                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
-                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
+                leftOffset: undefined | import("./LinearGenomeView").BpOffset;
+                rightOffset: undefined | import("./LinearGenomeView").BpOffset;
             } & {
                 readonly trackLabelsSetting: any;
                 readonly width: number;
@@ -2361,8 +448,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
+                setOffsets(left?: import("./LinearGenomeView").BpOffset, right?: import("./LinearGenomeView").BpOffset): void;
+                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
                 setNewView(bpPerPx: number, offsetPx: number): void;
                 horizontallyFlip(): void;
                 showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -2375,30 +462,30 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
                 setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
-                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
+                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset, rightOffset?: import("./LinearGenomeView").BpOffset): {
                     start: number;
                     end: number;
                     type: string;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
+                    regionNumber?: number;
+                    reversed?: boolean;
                     refName: string;
                     assemblyName: string;
                     key: string;
                     offsetPx: number;
                     widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                    variant?: string;
+                    isLeftEndOfDisplayedRegion?: boolean;
                 }[];
                 afterDisplayedRegionsSet(cb: Function): void;
                 horizontalScroll(distance: number): number;
                 center(): void;
                 showAllRegions(): void;
-                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-                setDraggingTrackId(idx?: string | undefined): void;
+                showAllRegionsInAssembly(assemblyName?: string): void;
+                setDraggingTrackId(idx?: string): void;
                 setScaleFactor(factor: number): void;
                 clearView(): void;
                 exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
@@ -2423,137 +510,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
                 afterAttach(): void;
             } & {
-                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+                moveTo(start?: import("./LinearGenomeView").BpOffset, end?: import("./LinearGenomeView").BpOffset): void;
+                navToLocString(input: string, optAssemblyName?: string): Promise<void>;
                 navToSearchString({ input, assembly, }: {
                     input: string;
-                    assembly: {
-                        configuration: any;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-                    }, {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                    assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
                 }): Promise<void>;
-                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
+                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -2561,12 +524,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 bpToPx({ refName, coord, regionNumber, }: {
                     refName: string;
                     coord: number;
-                    regionNumber?: number | undefined;
+                    regionNumber?: number;
                 }): {
                     index: number;
                     offsetPx: number;
                 } | undefined;
-                centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
+                centerAt(coord: number, refName: string, regionNumber?: number): void;
                 pxToBp(px: number): {
                     coord: number;
                     index: number;
@@ -2576,7 +539,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed?: boolean | undefined;
+                    reversed?: boolean;
                 };
                 readonly centerLineInfo: {
                     coord: number;
@@ -2587,7 +550,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed?: boolean | undefined;
+                    reversed?: boolean;
                 } | undefined;
             } & {
                 afterCreate(): void;
@@ -2619,21 +582,19 @@ export default class LinearGenomeViewPlugin extends Plugin {
             } & {
                 setDisplayName(name: string): void;
                 setWidth(newWidth: number): void;
-                setMinimized(flag: boolean): void; /**
-                 * #slot configuration.LinearGenomeViewPlugin.trackLabels
-                 */
+                setMinimized(flag: boolean): void;
             } & {
                 volatileWidth: number | undefined;
                 minimumBlockWidth: number;
-                draggingTrackId: string | undefined;
+                draggingTrackId: undefined | string;
                 volatileError: unknown;
                 afterDisplayedRegionsSetCallbacks: Function[];
                 scaleFactor: number;
                 trackRefs: Record<string, HTMLDivElement>;
                 coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
                 coarseTotalBp: number;
-                leftOffset: import("./LinearGenomeView").BpOffset | undefined;
-                rightOffset: import("./LinearGenomeView").BpOffset | undefined;
+                leftOffset: undefined | import("./LinearGenomeView").BpOffset;
+                rightOffset: undefined | import("./LinearGenomeView").BpOffset;
             } & {
                 readonly trackLabelsSetting: any;
                 readonly width: number;
@@ -2682,8 +643,8 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 removeHighlight(highlight: Required<import("@jbrowse/core/util").ParsedLocString>): void;
                 scrollTo(offsetPx: number): number;
                 zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-                setOffsets(left?: import("./LinearGenomeView").BpOffset | undefined, right?: import("./LinearGenomeView").BpOffset | undefined): void;
-                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string | undefined): void;
+                setOffsets(left?: import("./LinearGenomeView").BpOffset, right?: import("./LinearGenomeView").BpOffset): void;
+                setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
                 setNewView(bpPerPx: number, offsetPx: number): void;
                 horizontallyFlip(): void;
                 showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
@@ -2696,30 +657,30 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 moveTrack(movingId: string, targetId: string): void;
                 closeView(): void;
                 toggleTrack(trackId: string): boolean;
-                setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
+                setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
                 setShowCenterLine(b: boolean): void;
                 setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
                 activateTrackSelector(): import("@jbrowse/core/util").Widget;
-                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset | undefined, rightOffset?: import("./LinearGenomeView").BpOffset | undefined): {
+                getSelectedRegions(leftOffset?: import("./LinearGenomeView").BpOffset, rightOffset?: import("./LinearGenomeView").BpOffset): {
                     start: number;
                     end: number;
                     type: string;
-                    regionNumber?: number | undefined;
-                    reversed?: boolean | undefined;
+                    regionNumber?: number;
+                    reversed?: boolean;
                     refName: string;
                     assemblyName: string;
                     key: string;
                     offsetPx: number;
                     widthPx: number;
-                    variant?: string | undefined;
-                    isLeftEndOfDisplayedRegion?: boolean | undefined;
+                    variant?: string;
+                    isLeftEndOfDisplayedRegion?: boolean;
                 }[];
                 afterDisplayedRegionsSet(cb: Function): void;
                 horizontalScroll(distance: number): number;
                 center(): void;
                 showAllRegions(): void;
-                showAllRegionsInAssembly(assemblyName?: string | undefined): void;
-                setDraggingTrackId(idx?: string | undefined): void;
+                showAllRegionsInAssembly(assemblyName?: string): void;
+                setDraggingTrackId(idx?: string): void;
                 setScaleFactor(factor: number): void;
                 clearView(): void;
                 exportSvg(opts?: import("./LinearGenomeView").ExportSvgOptions): Promise<void>;
@@ -2744,137 +705,13 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
                 afterAttach(): void;
             } & {
-                moveTo(start?: import("./LinearGenomeView").BpOffset | undefined, end?: import("./LinearGenomeView").BpOffset | undefined): void;
-                navToLocString(input: string, optAssemblyName?: string | undefined): Promise<void>;
+                moveTo(start?: import("./LinearGenomeView").BpOffset, end?: import("./LinearGenomeView").BpOffset): void;
+                navToLocString(input: string, optAssemblyName?: string): Promise<void>;
                 navToSearchString({ input, assembly, }: {
                     input: string;
-                    assembly: {
-                        configuration: any;
-                    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
-                        configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
-                    }, {
-                        error: unknown;
-                        loaded: boolean;
-                        loadingP: Promise<void> | undefined;
-                        volatileRegions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        refNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        lowerCaseRefNameAliases: {
-                            [x: string]: string | undefined;
-                        } | undefined;
-                        cytobands: import("@jbrowse/core/util").Feature[] | undefined;
-                    } & {
-                        getConf(arg: string): any;
-                    } & {
-                        readonly initialized: boolean;
-                        readonly name: string;
-                        readonly regions: import("@jbrowse/core/assemblyManager/assembly").BasicRegion[] | undefined;
-                        readonly aliases: string[];
-                        readonly displayName: string | undefined;
-                        hasName(name: string): boolean;
-                        readonly allAliases: string[];
-                        readonly allRefNames: string[] | undefined;
-                        readonly lowerCaseRefNames: string[] | undefined;
-                        readonly allRefNamesWithLowerCase: string[] | undefined;
-                        readonly rpcManager: import("@jbrowse/core/rpc/RpcManager").default;
-                        readonly refNameColors: string[];
-                    } & {
-                        readonly refNames: string[] | undefined;
-                    } & {
-                        getCanonicalRefName(refName: string): string | undefined;
-                        getRefNameColor(refName: string): string | undefined;
-                        isValidRefName(refName: string): boolean;
-                    } & {
-                        setLoaded({ adapterRegionsWithAssembly, refNameAliases, lowerCaseRefNameAliases, cytobands, }: import("@jbrowse/core/assemblyManager/assembly").Loading): void;
-                        setError(e: unknown): void;
-                        setRegions(regions: import("@jbrowse/core/util").Region[]): void;
-                        setRefNameAliases(aliases: {
-                            [x: string]: string | undefined;
-                        }, lcAliases: {
-                            [x: string]: string | undefined;
-                        }): void;
-                        setCytobands(cytobands: import("@jbrowse/core/util").Feature[]): void;
-                        setLoadingP(p?: Promise<void> | undefined): void;
-                        load(): Promise<void>;
-                        loadPre(): Promise<void>;
-                    } & {
-                        getAdapterMapEntry(adapterConf: {
-                            [x: string]: unknown;
-                        }, options: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<import("@jbrowse/core/assemblyManager/assembly").RefNameMap>;
-                        getRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                        getReverseRefNameMapForAdapter(adapterConf: {
-                            [x: string]: unknown;
-                        }, opts: import("@jbrowse/core/data_adapters/BaseAdapter").BaseOptions): Promise<{
-                            [x: string]: string | undefined;
-                        }>;
-                    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+                    assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
                 }): Promise<void>;
-                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string | undefined): Promise<void>;
+                navToLocations(parsedLocStrings: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string): Promise<void>;
                 navTo(query: import("./LinearGenomeView").NavLocation): void;
                 navToMultiple(locations: import("./LinearGenomeView").NavLocation[]): void;
             } & {
@@ -2882,12 +719,12 @@ export default class LinearGenomeViewPlugin extends Plugin {
                 bpToPx({ refName, coord, regionNumber, }: {
                     refName: string;
                     coord: number;
-                    regionNumber?: number | undefined;
+                    regionNumber?: number;
                 }): {
                     index: number;
                     offsetPx: number;
                 } | undefined;
-                centerAt(coord: number, refName: string, regionNumber?: number | undefined): void;
+                centerAt(coord: number, refName: string, regionNumber?: number): void;
                 pxToBp(px: number): {
                     coord: number;
                     index: number;
@@ -2897,7 +734,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed?: boolean | undefined;
+                    reversed?: boolean;
                 };
                 readonly centerLineInfo: {
                     coord: number;
@@ -2908,7 +745,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
                     offset: number;
                     start: number;
                     end: number;
-                    reversed?: boolean | undefined;
+                    reversed?: boolean;
                 } | undefined;
             } & {
                 afterCreate(): void;