@jbrowse/plugin-linear-genome-view 2.12.0 → 2.12.1

package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGTrackLabel;
 const react_1 = __importDefault(require("react"));
 const material_1 = require("@mui/material");
 const util_1 = require("@jbrowse/core/util");
@@ -14,4 +15,3 @@ function SVGTrackLabel({ trackLabels, trackName, fontSize, trackLabelOffset, x,
     const name = (0, util_1.coarseStripHTML)(trackName);
     return trackLabels !== 'none' ? (react_1.default.createElement("g", null, trackLabels === 'left' ? (react_1.default.createElement("text", { x: trackLabelOffset - 40, y: 20, fill: fill, fontSize: fontSize, dominantBaseline: "hanging", textAnchor: "end" }, name)) : (react_1.default.createElement("text", { x: x + xoff, y: yoff, fill: fill, fontSize: fontSize, dominantBaseline: "hanging" }, name)))) : null;
 }
-exports.default = SVGTrackLabel;

package/dist/LinearGenomeView/svgcomponents/SVGTracks.js

@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = SVGTracks;
 const react_1 = __importDefault(require("react"));
 const tracks_1 = require("@jbrowse/core/util/tracks");
 const util_1 = require("@jbrowse/core/util");
@@ -26,4 +27,3 @@ function SVGTracks({ displayResults, model, offset, textHeight, fontSize, trackL
             react_1.default.createElement(SVGTrackLabel_1.default, { trackName: trackName, fontSize: fontSize, trackLabels: trackLabels, trackLabelOffset: trackLabelOffset, x: x })));
     })));
 }
-exports.default = SVGTracks;

package/dist/LinearGenomeView/svgcomponents/util.js

@@ -1,9 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.totalHeight = void 0;
+exports.totalHeight = totalHeight;
 const util_1 = require("@jbrowse/core/util");
 function totalHeight(tracks, textHeight, trackLabels) {
     return (0, util_1.sum)(tracks.map(t => t.displays[0].height +
         (['none', 'left'].includes(trackLabels) ? 0 : textHeight)));
 }
-exports.totalHeight = totalHeight;

package/dist/LinearGenomeView/util.d.ts

@@ -23,9 +23,9 @@ export declare function makeTicks(start: number, end: number, bpPerPx: number, e
 export declare function generateLocations(regions: ParsedLocString[] | undefined, assemblyManager: AssemblyManager, assemblyName?: string): Promise<{
     assemblyName: string;
     parentRegion: import("@jbrowse/core/assemblyManager/assembly").BasicRegion;
-    end?: number | undefined;
-    start?: number | undefined;
-    reversed?: boolean | undefined;
+    end?: number;
+    start?: number;
+    reversed?: boolean;
     refName: string;
 }[]>;
 /**

package/dist/LinearGenomeView/util.js

@@ -1,6 +1,9 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.parseLocStrings = exports.generateLocations = exports.makeTicks = exports.chooseGridPitch = void 0;
+exports.chooseGridPitch = chooseGridPitch;
+exports.makeTicks = makeTicks;
+exports.generateLocations = generateLocations;
+exports.parseLocStrings = parseLocStrings;
 const util_1 = require("@jbrowse/core/util");
 /**
  * Given a scale ( bp/px ) and minimum distances (px) between major and minor
@@ -33,7 +36,6 @@ function chooseGridPitch(scale, minMajorPitchPx, minMinorPitchPx) {
     }
     return { majorPitch, minorPitch };
 }
-exports.chooseGridPitch = chooseGridPitch;
 function makeTicks(start, end, bpPerPx, emitMajor = true, emitMinor = true) {
     const gridPitch = chooseGridPitch(bpPerPx, 60, 15);
     let minBase = start;
@@ -64,7 +66,6 @@ function makeTicks(start, end, bpPerPx, emitMajor = true, emitMinor = true) {
     }
     return ticks;
 }
-exports.makeTicks = makeTicks;
 /**
  * Generate location objects for a set of parsed locstrings, which includes
  * translating the refNames to assembly-canonical refNames and adding the
@@ -102,7 +103,6 @@ async function generateLocations(regions = [], assemblyManager, assemblyName) {
         };
     }));
 }
-exports.generateLocations = generateLocations;
 /**
  * Parses locString or space separated set of locStrings into location objects
  * Example inputs:
@@ -141,4 +141,3 @@ function parseLocStrings(input, assemblyName, isValidRefName) {
         }
     }
 }
-exports.parseLocStrings = parseLocStrings;