@jbrowse/plugin-linear-genome-view 2.11.2 → 2.12.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (63) hide show
  1. package/dist/BaseLinearDisplay/components/Block.js +3 -3
  2. package/dist/BaseLinearDisplay/components/BlockMsg.js +1 -1
  3. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +22 -24
  4. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +2 -2
  5. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +1 -1
  6. package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +1 -1
  7. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +1 -1
  8. package/dist/BaseLinearDisplay/models/renderSvg.js +1 -2
  9. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +4 -4
  10. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +1 -2
  11. package/dist/BaseLinearDisplay/models/util.js +3 -4
  12. package/dist/BasicTrack/index.js +1 -1
  13. package/dist/FeatureTrack/index.js +1 -1
  14. package/dist/LaunchLinearGenomeView/index.js +1 -1
  15. package/dist/LinearBareDisplay/configSchema.js +1 -2
  16. package/dist/LinearBareDisplay/index.js +1 -1
  17. package/dist/LinearBareDisplay/model.d.ts +26 -33
  18. package/dist/LinearBareDisplay/model.js +1 -2
  19. package/dist/LinearBasicDisplay/index.js +1 -1
  20. package/dist/LinearBasicDisplay/model.d.ts +52 -53
  21. package/dist/LinearGenomeView/components/ExportSvgDialog.js +1 -1
  22. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +1 -1
  23. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +1 -1
  24. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +1 -1
  25. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +3 -4
  26. package/dist/LinearGenomeView/components/RubberbandSpan.js +1 -1
  27. package/dist/LinearGenomeView/components/SearchResultsDialog.js +1 -1
  28. package/dist/LinearGenomeView/components/SearchResultsTable.js +1 -1
  29. package/dist/LinearGenomeView/components/TrackLabel.js +4 -4
  30. package/dist/LinearGenomeView/components/TrackRenderingContainer.js +10 -5
  31. package/dist/LinearGenomeView/components/hooks.d.ts +2 -2
  32. package/dist/LinearGenomeView/components/hooks.js +11 -17
  33. package/dist/LinearGenomeView/components/util.js +4 -5
  34. package/dist/LinearGenomeView/index.js +1 -1
  35. package/dist/LinearGenomeView/model.d.ts +12 -30
  36. package/dist/LinearGenomeView/model.js +4 -4
  37. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +1 -1
  38. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +1 -1
  39. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +2 -2
  40. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +1 -1
  41. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +1 -1
  42. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +1 -1
  43. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +1 -1
  44. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +1 -1
  45. package/dist/LinearGenomeView/svgcomponents/util.js +1 -2
  46. package/dist/LinearGenomeView/util.d.ts +3 -3
  47. package/dist/LinearGenomeView/util.js +4 -5
  48. package/dist/index.d.ts +81 -2352
  49. package/dist/searchUtils.js +5 -6
  50. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +22 -24
  51. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +2 -2
  52. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +4 -4
  53. package/esm/LinearBareDisplay/model.d.ts +26 -33
  54. package/esm/LinearBasicDisplay/model.d.ts +52 -53
  55. package/esm/LinearGenomeView/components/TrackLabel.js +4 -4
  56. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +10 -5
  57. package/esm/LinearGenomeView/components/hooks.d.ts +2 -2
  58. package/esm/LinearGenomeView/components/hooks.js +8 -10
  59. package/esm/LinearGenomeView/model.d.ts +12 -30
  60. package/esm/LinearGenomeView/model.js +3 -3
  61. package/esm/LinearGenomeView/util.d.ts +3 -3
  62. package/esm/index.d.ts +81 -2352
  63. package/package.json +2 -4
@@ -1,4 +1,3 @@
1
- /// <reference types="react" />
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1
  import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
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  import { MenuItem } from '@jbrowse/core/ui';
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  import { Instance } from 'mobx-state-tree';
@@ -40,7 +39,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  }, {
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  renderInProgress: AbortController | undefined;
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  filled: boolean;
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- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ reactElement: import("react").ReactElement | undefined;
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  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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  layout: any;
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  status: string;
@@ -51,12 +50,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  model: {
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  error?: unknown;
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  reload: () => void;
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- message: import("react").ReactNode; /**
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- * #property
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- */
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- filled?: boolean | undefined;
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- status?: string | undefined;
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- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ message: import("react").ReactNode;
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+ filled?: boolean;
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+ status?: string;
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+ reactElement?: import("react").ReactElement;
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  };
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  }) => import("react").JSX.Element | undefined;
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  renderProps: any;
@@ -64,12 +61,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  doReload(): void;
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  afterAttach(): void;
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  setStatus(message: string): void;
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- setLoading(abortController: AbortController): void; /**
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- * #getter
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- */
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+ setLoading(abortController: AbortController): void;
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  setMessage(messageText: string): void;
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  setRendered(props: {
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- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
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+ reactElement: import("react").ReactElement;
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  features: Map<string, import("@jbrowse/core/util").Feature>;
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  layout: any;
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  maxHeightReached: boolean;
@@ -97,9 +92,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  };
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  mouseover: {
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  type: string;
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- description: string; /**
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- * #property
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- */
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+ description: string;
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  defaultValue: string;
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  contextVariable: string[];
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  };
@@ -153,18 +146,20 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  error: unknown;
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  message: string | undefined;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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- id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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- type: import("mobx-state-tree").ISimpleType<string>; /**
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+ id: import("mobx-state-tree" /**
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  * #property
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- */
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+ */).IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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+ type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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  error: unknown;
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  message: string | undefined;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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- onHorizontalScroll?: Function | undefined;
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- blockState?: Record<string, any> | undefined;
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+ onHorizontalScroll?: Function;
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+ blockState? /**
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+ * #getter
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+ */: Record<string, any>;
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  }>;
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  readonly DisplayBlurb: import("react").FC<{
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  model: {
@@ -184,19 +179,17 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  error: unknown;
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  message: string | undefined;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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- }> | null; /**
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- * #getter
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- */
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+ }> | null;
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  readonly adapterConfig: any;
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  readonly parentTrack: any;
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  renderProps(): any;
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  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
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- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
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  trackMenuItems(): MenuItem[];
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  readonly viewMenuActions: MenuItem[];
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  regionCannotBeRendered(): null;
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  } & {
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- setMessage(arg?: string | undefined): void;
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+ setMessage(arg?: string): void;
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  setError(error?: unknown): void;
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  setRpcDriverName(rpcDriverName: string): void;
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  reload(): void;
@@ -209,8 +202,8 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  setHeight(displayHeight: number): number;
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  resizeHeight(distance: number): number;
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  } & {
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- featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
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- featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
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+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
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  currStatsBpPerPx: number;
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  } & {
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  readonly currentBytesRequested: number;
@@ -222,22 +215,20 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  afterAttach(): void;
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  } & {
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  setCurrStatsBpPerPx(n: number): void;
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- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
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  getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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  setFeatureDensityStatsP(arg: any): void;
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- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
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  clearFeatureDensityStats(): void;
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  } & {
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- readonly regionTooLarge: boolean; /**
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- * #method
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- */
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+ readonly regionTooLarge: boolean;
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  readonly regionTooLargeReason: string;
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  } & {
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  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
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  } & {
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- featureIdUnderMouse: string | undefined;
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- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
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+ featureIdUnderMouse: undefined | string;
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+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
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  } & {
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  readonly blockType: "dynamicBlocks" | "staticBlocks";
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  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -245,7 +236,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  readonly renderDelay: number;
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  readonly TooltipComponent: import("react").FC<any>;
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  readonly selectedFeatureId: string | undefined;
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- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
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+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
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  } & {
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  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
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  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -258,8 +249,8 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
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  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
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  clearFeatureSelection(): void;
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- setFeatureIdUnderMouse(feature?: string | undefined): void;
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- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
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+ setFeatureIdUnderMouse(feature?: string): void;
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+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
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  } & {
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  reload(): Promise<void>;
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  } & {
@@ -301,7 +292,15 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  readonly rendererConfig: {
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  [x: string]: any;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal" /**
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+ * #property
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+ */).NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
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  } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
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  } & {
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  /**
@@ -332,7 +331,13 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  config: {
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  [x: string]: any;
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  } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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- setSubschema(slotName: string, data: unknown): any;
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
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+ setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
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+ [x: string]: any;
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+ } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
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+ } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>);
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  } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>;
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  filters: SerializableFilterChain;
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  };
@@ -370,7 +375,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  }, {
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  renderInProgress: AbortController | undefined;
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  filled: boolean;
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- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ reactElement: import("react").ReactElement | undefined;
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  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
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  layout: any;
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  status: string;
@@ -381,12 +386,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  model: {
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  error?: unknown;
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  reload: () => void;
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- message: import("react").ReactNode; /**
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- * #property
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- */
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- filled?: boolean | undefined;
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- status?: string | undefined;
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- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
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+ message: import("react").ReactNode;
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+ filled?: boolean;
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+ status?: string;
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+ reactElement?: import("react").ReactElement;
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  };
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  }) => import("react").JSX.Element | undefined;
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  renderProps: any;
@@ -394,12 +397,10 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  doReload(): void;
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  afterAttach(): void;
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  setStatus(message: string): void;
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- setLoading(abortController: AbortController): void; /**
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- * #getter
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- */
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+ setLoading(abortController: AbortController): void;
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  setMessage(messageText: string): void;
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  setRendered(props: {
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- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
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+ reactElement: import("react").ReactElement;
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  features: Map<string, import("@jbrowse/core/util").Feature>;
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  layout: any;
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  maxHeightReached: boolean;
@@ -427,9 +428,7 @@ declare function stateModelFactory(configSchema: AnyConfigurationSchemaType): im
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  };
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  mouseover: {
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  type: string;
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- description: string; /**
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- * #property
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- */
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+ description: string;
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  defaultValue: string;
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  contextVariable: string[];
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  };
@@ -23,6 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
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  return result;
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = ExportSvgDialog;
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  const react_1 = __importStar(require("react"));
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  const material_1 = require("@mui/material");
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  const ui_1 = require("@jbrowse/core/ui");
@@ -84,4 +85,3 @@ function ExportSvgDialog({ model, handleClose, }) {
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  }
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  } }, "Submit"))));
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  }
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- exports.default = ExportSvgDialog;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = AutocompleteTextField;
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  const react_1 = __importDefault(require("react"));
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  const material_1 = require("@mui/material");
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  // locals
@@ -18,4 +19,3 @@ function AutocompleteTextField({ TextFieldProps, inputBoxVal, params, showHelp,
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  endAdornment: (react_1.default.createElement(EndAdornment_1.default, { showHelp: showHelp, endAdornment: params.InputProps.endAdornment })),
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  }, placeholder: "Search for location", onChange: e => setCurrentSearch(e.target.value) }));
20
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  }
21
- exports.default = AutocompleteTextField;
@@ -26,6 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
29
+ exports.default = EndAdornment;
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  const react_1 = __importStar(require("react"));
30
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  const material_1 = require("@mui/material");
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  // icons
@@ -48,4 +49,3 @@ function EndAdornment({ showHelp, endAdornment, }) {
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  showHelp ? react_1.default.createElement(HelpAdornment, null) : null),
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  endAdornment));
50
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  }
51
- exports.default = EndAdornment;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
4
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.default = HelpDialog;
6
7
  const react_1 = __importDefault(require("react"));
7
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  const material_1 = require("@mui/material");
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  const ui_1 = require("@jbrowse/core/ui");
@@ -45,4 +46,3 @@ function HelpDialog({ handleClose, }) {
45
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  react_1.default.createElement(material_1.DialogActions, null,
46
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  react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "primary" }, "Close"))));
47
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  }
48
- exports.default = HelpDialog;
@@ -3,7 +3,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
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  return (mod && mod.__esModule) ? mod : { "default": mod };
4
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.getDeduplicatedResult = exports.aggregateResults = exports.getFiltered = void 0;
6
+ exports.getFiltered = getFiltered;
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+ exports.aggregateResults = aggregateResults;
8
+ exports.getDeduplicatedResult = getDeduplicatedResult;
7
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  const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
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  // filter so don't need re-filtering
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  function filterOptions(options, searchQuery) {
@@ -28,7 +30,6 @@ function getFiltered(opts, inputValue) {
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  : []),
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  ];
30
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  }
31
- exports.getFiltered = getFiltered;
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  function aggregateResults(results) {
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  const m = {};
34
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  for (const result of results) {
@@ -40,7 +41,6 @@ function aggregateResults(results) {
40
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  }
41
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  return m;
42
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  }
43
- exports.aggregateResults = aggregateResults;
44
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  function getDeduplicatedResult(results) {
45
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  return Object.entries(aggregateResults(results)).map(([displayString, results]) => results.length === 1
46
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  ? {
@@ -55,4 +55,3 @@ function getDeduplicatedResult(results) {
55
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  }),
56
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  });
57
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  }
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- exports.getDeduplicatedResult = getDeduplicatedResult;
@@ -23,6 +23,7 @@ var __importStar = (this && this.__importStar) || function (mod) {
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  return result;
24
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
26
+ exports.default = RubberbandSpan;
26
27
  const react_1 = __importStar(require("react"));
27
28
  const mui_1 = require("tss-react/mui");
28
29
  const material_1 = require("@mui/material");
@@ -72,4 +73,3 @@ function RubberbandSpan({ leftBpOffset, rightBpOffset, numOfBpSelected, left, wi
72
73
  (0, util_1.toLocale)(numOfBpSelected),
73
74
  " bp")) : null)));
74
75
  }
75
- exports.default = RubberbandSpan;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.default = SearchResultsDialog;
6
7
  const react_1 = __importDefault(require("react"));
7
8
  const ui_1 = require("@jbrowse/core/ui");
8
9
  const material_1 = require("@mui/material");
@@ -20,4 +21,3 @@ function SearchResultsDialog({ model, assemblyName, searchQuery, searchResults,
20
21
  react_1.default.createElement(material_1.DialogActions, null,
21
22
  react_1.default.createElement(material_1.Button, { onClick: () => handleClose(), color: "primary" }, "Cancel"))));
22
23
  }
23
- exports.default = SearchResultsDialog;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
+ exports.default = SearchResultsTable;
6
7
  const react_1 = __importDefault(require("react"));
7
8
  const material_1 = require("@mui/material");
8
9
  const mobx_state_tree_1 = require("mobx-state-tree");
@@ -79,4 +80,3 @@ function SearchResultsTable({ searchResults, assemblyName: optAssemblyName, mode
79
80
  handleClose();
80
81
  }, color: "primary", variant: "contained" }, "Go")))))))));
81
82
  }
82
- exports.default = SearchResultsTable;
@@ -30,10 +30,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
30
30
  },
31
31
  },
32
32
  trackName: {
33
- margin: '0 auto',
34
- width: '90%',
35
33
  fontSize: '0.8rem',
36
- pointerEvents: 'none',
37
34
  },
38
35
  iconButton: {
39
36
  padding: theme.spacing(1),
@@ -87,7 +84,10 @@ const TrackLabel = (0, mobx_react_1.observer)(react_1.default.forwardRef(functio
87
84
  react_1.default.createElement(TrackLabelDragHandle_1.default, { track: track, trackId: trackId, view: view }),
88
85
  react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track" },
89
86
  react_1.default.createElement(Close_1.default, { fontSize: "small" })),
90
- react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName },
87
+ react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName, onMouseDown: event => {
88
+ // avoid becoming a click-and-drag action on the lgv
89
+ event.stopPropagation();
90
+ } },
91
91
  react_1.default.createElement(ui_1.SanitizedHTML, { html: [trackName, minimized ? '(minimized)' : '']
92
92
  .filter(f => !!f)
93
93
  .join(' ') })),
@@ -51,19 +51,24 @@ const TrackRenderingContainer = (0, mobx_react_1.observer)(function ({ model, tr
51
51
  const { classes } = useStyles();
52
52
  const display = track.displays[0];
53
53
  const { height, RenderingComponent, DisplayBlurb } = display;
54
+ const { trackRefs, id, scaleFactor } = model;
54
55
  const trackId = (0, configuration_1.getConf)(track, 'trackId');
55
56
  const ref = (0, react_1.useRef)(null);
56
57
  const minimized = track.minimized;
57
58
  (0, react_1.useEffect)(() => {
58
59
  if (ref.current) {
59
- model.trackRefs[trackId] = ref.current;
60
+ trackRefs[trackId] = ref.current;
60
61
  }
61
62
  return () => {
62
- delete model.trackRefs[trackId];
63
+ delete trackRefs[trackId];
63
64
  };
64
- }, [model.trackRefs, trackId]);
65
- return (react_1.default.createElement("div", { className: classes.trackRenderingContainer, style: { height: minimized ? 20 : height }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: onDragEnter, "data-testid": `trackRenderingContainer-${model.id}-${trackId}` }, !minimized ? (react_1.default.createElement(react_1.default.Fragment, null,
66
- react_1.default.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: { transform: `scaleX(${model.scaleFactor})` } },
65
+ }, [trackRefs, trackId]);
66
+ return (react_1.default.createElement("div", { className: classes.trackRenderingContainer, style: {
67
+ height: minimized ? 20 : height,
68
+ }, onScroll: evt => display.setScrollTop(evt.currentTarget.scrollTop), onDragEnter: onDragEnter, "data-testid": `trackRenderingContainer-${id}-${trackId}` }, !minimized ? (react_1.default.createElement(react_1.default.Fragment, null,
69
+ react_1.default.createElement("div", { ref: ref, className: classes.renderingComponentContainer, style: {
70
+ transform: scaleFactor !== 1 ? `scaleX(${scaleFactor})` : undefined,
71
+ } },
67
72
  react_1.default.createElement(react_1.Suspense, { fallback: react_1.default.createElement(ui_1.LoadingEllipses, null) },
68
73
  react_1.default.createElement(RenderingComponent, { model: display, onHorizontalScroll: model.horizontalScroll }))),
69
74
  DisplayBlurb ? (react_1.default.createElement("div", { style: {
@@ -42,7 +42,7 @@ export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement>, mod
42
42
  offset: number;
43
43
  start: number;
44
44
  end: number;
45
- reversed: boolean;
45
+ reversed?: boolean;
46
46
  };
47
47
  rightBpOffset: {
48
48
  coord: number;
@@ -53,7 +53,7 @@ export declare function useRangeSelect(ref: React.RefObject<HTMLDivElement>, mod
53
53
  offset: number;
54
54
  start: number;
55
55
  end: number;
56
- reversed: boolean;
56
+ reversed?: boolean;
57
57
  };
58
58
  anchorPosition: AnchorPosition | undefined;
59
59
  numOfBpSelected: number;
@@ -1,11 +1,9 @@
1
1
  "use strict";
2
- var __importDefault = (this && this.__importDefault) || function (mod) {
3
- return (mod && mod.__esModule) ? mod : { "default": mod };
4
- };
5
2
  Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.useWheelScroll = exports.useRangeSelect = exports.useSideScroll = void 0;
3
+ exports.useSideScroll = useSideScroll;
4
+ exports.useRangeSelect = useRangeSelect;
5
+ exports.useWheelScroll = useWheelScroll;
7
6
  const react_1 = require("react");
8
- const normalize_wheel_1 = __importDefault(require("normalize-wheel"));
9
7
  const util_1 = require("./util");
10
8
  function useSideScroll(model) {
11
9
  const [mouseDragging, setMouseDragging] = (0, react_1.useState)(false);
@@ -71,7 +69,6 @@ function useSideScroll(model) {
71
69
  }
72
70
  return { mouseDown, mouseUp };
73
71
  }
74
- exports.useSideScroll = useSideScroll;
75
72
  function useRangeSelect(ref, model, shiftOnly) {
76
73
  const [startX, setStartX] = (0, react_1.useState)();
77
74
  const [currentX, setCurrentX] = (0, react_1.useState)();
@@ -205,7 +202,6 @@ function useRangeSelect(ref, model, shiftOnly) {
205
202
  };
206
203
  }
207
204
  }
208
- exports.useRangeSelect = useRangeSelect;
209
205
  function useWheelScroll(ref, model) {
210
206
  const delta = (0, react_1.useRef)(0);
211
207
  const timeout = (0, react_1.useRef)();
@@ -214,11 +210,10 @@ function useWheelScroll(ref, model) {
214
210
  const curr = ref.current;
215
211
  // if ctrl is held down, zoom in with y-scroll
216
212
  // else scroll horizontally with x-scroll
217
- function onWheel(origEvent) {
218
- const event = (0, normalize_wheel_1.default)(origEvent);
219
- if (origEvent.ctrlKey === true) {
220
- origEvent.preventDefault();
221
- delta.current += event.pixelY / 500;
213
+ function onWheel(event) {
214
+ if (event.ctrlKey === true) {
215
+ event.preventDefault();
216
+ delta.current += event.deltaY / 500;
222
217
  model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
223
218
  if (timeout.current) {
224
219
  clearTimeout(timeout.current);
@@ -227,7 +222,7 @@ function useWheelScroll(ref, model) {
227
222
  model.setScaleFactor(1);
228
223
  model.zoomTo(delta.current > 0
229
224
  ? model.bpPerPx * (1 + delta.current)
230
- : model.bpPerPx / (1 - delta.current), origEvent.clientX - ((curr === null || curr === void 0 ? void 0 : curr.getBoundingClientRect().left) || 0));
225
+ : model.bpPerPx / (1 - delta.current), event.clientX - ((curr === null || curr === void 0 ? void 0 : curr.getBoundingClientRect().left) || 0));
231
226
  delta.current = 0;
232
227
  }, 300);
233
228
  }
@@ -235,10 +230,10 @@ function useWheelScroll(ref, model) {
235
230
  // this is needed to stop the event from triggering "back button
236
231
  // action" on MacOSX etc. but is a heuristic to avoid preventing the
237
232
  // inner-track scroll behavior
238
- if (Math.abs(event.pixelX) > Math.abs(2 * event.pixelY)) {
239
- origEvent.preventDefault();
233
+ if (Math.abs(event.deltaX) > Math.abs(2 * event.deltaY)) {
234
+ event.preventDefault();
240
235
  }
241
- delta.current += event.pixelX;
236
+ delta.current += event.deltaX;
242
237
  if (!scheduled.current) {
243
238
  // use rAF to make it so multiple event handlers aren't fired per-frame
244
239
  // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
@@ -260,4 +255,3 @@ function useWheelScroll(ref, model) {
260
255
  return () => { };
261
256
  }, [model, ref]);
262
257
  }
263
- exports.useWheelScroll = useWheelScroll;
@@ -3,7 +3,10 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
3
3
  return (mod && mod.__esModule) ? mod : { "default": mod };
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
- exports.getCytobands = exports.getRelativeX = exports.splitLast = exports.fetchResults = void 0;
6
+ exports.fetchResults = fetchResults;
7
+ exports.splitLast = splitLast;
8
+ exports.getRelativeX = getRelativeX;
9
+ exports.getCytobands = getCytobands;
7
10
  const util_1 = require("@jbrowse/core/util");
8
11
  const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
9
12
  async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
@@ -18,7 +21,6 @@ async function fetchResults({ queryString, searchType, searchScope, rankSearchRe
18
21
  const refNameResults = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _a === void 0 ? void 0 : _a.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase())).slice(0, 10).map(r => new BaseResults_1.default({ label: r }));
19
22
  return (0, util_1.dedupe)([...(refNameResults || []), ...(textSearchResults || [])], elt => elt.getId());
20
23
  }
21
- exports.fetchResults = fetchResults;
22
24
  // splits on the last instance of a character
23
25
  function splitLast(str, split) {
24
26
  const lastIndex = str.lastIndexOf(split);
@@ -31,11 +33,9 @@ function splitLast(str, split) {
31
33
  return [before, after];
32
34
  }
33
35
  }
34
- exports.splitLast = splitLast;
35
36
  function getRelativeX(event, element) {
36
37
  return event.clientX - ((element === null || element === void 0 ? void 0 : element.getBoundingClientRect().left) || 0);
37
38
  }
38
- exports.getRelativeX = getRelativeX;
39
39
  function getCytobands(assembly, refName) {
40
40
  var _a;
41
41
  return (((_a = assembly === null || assembly === void 0 ? void 0 : assembly.cytobands) === null || _a === void 0 ? void 0 : _a.map(f => ({
@@ -45,4 +45,3 @@ function getCytobands(assembly, refName) {
45
45
  type: f.get('type'),
46
46
  })).filter(f => f.refName === refName)) || []);
47
47
  }
48
- exports.getCytobands = getCytobands;
@@ -26,6 +26,7 @@ var __exportStar = (this && this.__exportStar) || function(m, exports) {
26
26
  for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
27
27
  };
28
28
  Object.defineProperty(exports, "__esModule", { value: true });
29
+ exports.default = LinearGenomeViewF;
29
30
  const react_1 = require("react");
30
31
  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
31
32
  const model_1 = require("./model");
@@ -39,5 +40,4 @@ function LinearGenomeViewF(pluginManager) {
39
40
  });
40
41
  });
41
42
  }
42
- exports.default = LinearGenomeViewF;
43
43
  __exportStar(require("./model"), exports);