@jbrowse/plugin-linear-genome-view 2.11.2 → 2.12.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (63) hide show
  1. package/dist/BaseLinearDisplay/components/Block.js +3 -3
  2. package/dist/BaseLinearDisplay/components/BlockMsg.js +1 -1
  3. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +22 -24
  4. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +2 -2
  5. package/dist/BaseLinearDisplay/models/FeatureDensityMixin.js +1 -1
  6. package/dist/BaseLinearDisplay/models/TrackHeightMixin.js +1 -1
  7. package/dist/BaseLinearDisplay/models/autorunFeatureDensityStats.js +1 -1
  8. package/dist/BaseLinearDisplay/models/renderSvg.js +1 -2
  9. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +4 -4
  10. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +1 -2
  11. package/dist/BaseLinearDisplay/models/util.js +3 -4
  12. package/dist/BasicTrack/index.js +1 -1
  13. package/dist/FeatureTrack/index.js +1 -1
  14. package/dist/LaunchLinearGenomeView/index.js +1 -1
  15. package/dist/LinearBareDisplay/configSchema.js +1 -2
  16. package/dist/LinearBareDisplay/index.js +1 -1
  17. package/dist/LinearBareDisplay/model.d.ts +26 -33
  18. package/dist/LinearBareDisplay/model.js +1 -2
  19. package/dist/LinearBasicDisplay/index.js +1 -1
  20. package/dist/LinearBasicDisplay/model.d.ts +52 -53
  21. package/dist/LinearGenomeView/components/ExportSvgDialog.js +1 -1
  22. package/dist/LinearGenomeView/components/RefNameAutocomplete/AutocompleteTextField.js +1 -1
  23. package/dist/LinearGenomeView/components/RefNameAutocomplete/EndAdornment.js +1 -1
  24. package/dist/LinearGenomeView/components/RefNameAutocomplete/HelpDialog.js +1 -1
  25. package/dist/LinearGenomeView/components/RefNameAutocomplete/util.js +3 -4
  26. package/dist/LinearGenomeView/components/RubberbandSpan.js +1 -1
  27. package/dist/LinearGenomeView/components/SearchResultsDialog.js +1 -1
  28. package/dist/LinearGenomeView/components/SearchResultsTable.js +1 -1
  29. package/dist/LinearGenomeView/components/TrackLabel.js +4 -4
  30. package/dist/LinearGenomeView/components/TrackRenderingContainer.js +10 -5
  31. package/dist/LinearGenomeView/components/hooks.d.ts +2 -2
  32. package/dist/LinearGenomeView/components/hooks.js +11 -17
  33. package/dist/LinearGenomeView/components/util.js +4 -5
  34. package/dist/LinearGenomeView/index.js +1 -1
  35. package/dist/LinearGenomeView/model.d.ts +12 -30
  36. package/dist/LinearGenomeView/model.js +4 -4
  37. package/dist/LinearGenomeView/svgcomponents/SVGBackground.js +1 -1
  38. package/dist/LinearGenomeView/svgcomponents/SVGHeader.js +1 -1
  39. package/dist/LinearGenomeView/svgcomponents/SVGLinearGenomeView.js +2 -2
  40. package/dist/LinearGenomeView/svgcomponents/SVGRegionSeparators.js +1 -1
  41. package/dist/LinearGenomeView/svgcomponents/SVGRuler.js +1 -1
  42. package/dist/LinearGenomeView/svgcomponents/SVGScalebar.js +1 -1
  43. package/dist/LinearGenomeView/svgcomponents/SVGTrackLabel.js +1 -1
  44. package/dist/LinearGenomeView/svgcomponents/SVGTracks.js +1 -1
  45. package/dist/LinearGenomeView/svgcomponents/util.js +1 -2
  46. package/dist/LinearGenomeView/util.d.ts +3 -3
  47. package/dist/LinearGenomeView/util.js +4 -5
  48. package/dist/index.d.ts +81 -2352
  49. package/dist/searchUtils.js +5 -6
  50. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +22 -24
  51. package/esm/BaseLinearDisplay/models/FeatureDensityMixin.d.ts +2 -2
  52. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +4 -4
  53. package/esm/LinearBareDisplay/model.d.ts +26 -33
  54. package/esm/LinearBasicDisplay/model.d.ts +52 -53
  55. package/esm/LinearGenomeView/components/TrackLabel.js +4 -4
  56. package/esm/LinearGenomeView/components/TrackRenderingContainer.js +10 -5
  57. package/esm/LinearGenomeView/components/hooks.d.ts +2 -2
  58. package/esm/LinearGenomeView/components/hooks.js +8 -10
  59. package/esm/LinearGenomeView/model.d.ts +12 -30
  60. package/esm/LinearGenomeView/model.js +3 -3
  61. package/esm/LinearGenomeView/util.d.ts +3 -3
  62. package/esm/index.d.ts +81 -2352
  63. package/package.json +2 -4
@@ -3,7 +3,9 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- exports.InterRegionPaddingBlock = exports.ElidedBlock = exports.ContentBlock = void 0;
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+ exports.ContentBlock = void 0;
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+ exports.ElidedBlock = ElidedBlock;
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+ exports.InterRegionPaddingBlock = InterRegionPaddingBlock;
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  const react_1 = __importDefault(require("react"));
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  const mui_1 = require("tss-react/mui");
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  const mobx_react_1 = require("mobx-react");
@@ -40,7 +42,6 @@ function ElidedBlock({ width }) {
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  const { classes } = useStyles();
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  return react_1.default.createElement("div", { className: classes.elidedBlock, style: { width } });
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  }
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- exports.ElidedBlock = ElidedBlock;
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  function InterRegionPaddingBlock({ boundary, width, style = {}, }) {
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  const { classes } = useStyles();
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  return (react_1.default.createElement("div", { style: {
@@ -50,4 +51,3 @@ function InterRegionPaddingBlock({ boundary, width, style = {}, }) {
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  ? classes.boundaryPaddingBlock
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  : classes.interRegionPaddingBlock }));
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  }
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- exports.InterRegionPaddingBlock = InterRegionPaddingBlock;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = BlockMsg;
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  const react_1 = __importDefault(require("react"));
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  const material_1 = require("@mui/material");
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  const mui_1 = require("tss-react/mui");
@@ -18,4 +19,3 @@ function BlockMsg({ message, severity, action, }) {
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  react_1.default.createElement(material_1.Tooltip, { title: message },
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  react_1.default.createElement("div", null, message))));
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  }
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- exports.default = BlockMsg;
@@ -50,7 +50,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  }, {
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  renderInProgress: AbortController | undefined;
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  filled: boolean;
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- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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+ reactElement: React.ReactElement | undefined;
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  features: Map<string, Feature> | undefined;
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  layout: any;
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  status: string;
@@ -62,9 +62,9 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  error?: unknown;
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  reload: () => void;
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  message: React.ReactNode;
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- filled?: boolean | undefined;
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- status?: string | undefined;
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- reactElement?: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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+ filled?: boolean;
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+ status?: string;
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+ reactElement?: React.ReactElement;
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  };
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  }) => React.JSX.Element | undefined;
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  renderProps: any;
@@ -75,7 +75,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  setLoading(abortController: AbortController): void;
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  setMessage(messageText: string): void;
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  setRendered(props: {
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- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
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+ reactElement: React.ReactElement;
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  features: Map<string, Feature>;
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  layout: any;
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  maxHeightReached: boolean;
@@ -139,8 +139,8 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  error: unknown;
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  message: string | undefined;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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- onHorizontalScroll?: Function | undefined;
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- blockState?: Record<string, any> | undefined;
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+ onHorizontalScroll?: Function;
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+ blockState?: Record<string, any>;
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  }>;
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  readonly DisplayBlurb: React.FC<{
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  model: {
@@ -165,12 +165,12 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  readonly parentTrack: any;
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  renderProps(): any;
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  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
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- readonly DisplayMessageComponent: React.FC<any> | undefined;
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+ readonly DisplayMessageComponent: undefined | React.FC<any>;
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  trackMenuItems(): MenuItem[];
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  readonly viewMenuActions: MenuItem[];
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  regionCannotBeRendered(): null;
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  } & {
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- setMessage(arg?: string | undefined): void;
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+ setMessage(arg?: string): void;
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  setError(error?: unknown): void;
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  setRpcDriverName(rpcDriverName: string): void;
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  reload(): void;
@@ -183,8 +183,8 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  setHeight(displayHeight: number): number;
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  resizeHeight(distance: number): number;
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  } & {
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- featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
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- featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
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+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
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  currStatsBpPerPx: number;
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  } & {
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  readonly currentBytesRequested: number;
@@ -196,22 +196,20 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  afterAttach(): void;
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  } & {
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  setCurrStatsBpPerPx(n: number): void;
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- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
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  getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
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  setFeatureDensityStatsP(arg: any): void;
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- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
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+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
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  clearFeatureDensityStats(): void;
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  } & {
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  readonly regionTooLarge: boolean;
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  readonly regionTooLargeReason: string;
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  } & {
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- regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features"; /**
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- * #action
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- */
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+ regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
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  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): React.JSX.Element | null;
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  } & {
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- featureIdUnderMouse: string | undefined;
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- contextMenuFeature: Feature | undefined;
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+ featureIdUnderMouse: undefined | string;
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+ contextMenuFeature: undefined | Feature;
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  } & {
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  /**
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  * #getter
@@ -243,7 +241,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  * if a display-level message should be displayed instead of the blocks,
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  * make this return a react component
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  */
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- readonly DisplayMessageComponent: React.FC<any> | undefined;
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+ readonly DisplayMessageComponent: undefined | React.FC<any>;
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  } & {
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  /**
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  * #getter
@@ -352,7 +350,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  }, {
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  renderInProgress: AbortController | undefined;
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  filled: boolean;
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- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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+ reactElement: React.ReactElement | undefined;
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  features: Map<string, Feature> | undefined;
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  layout: any;
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  status: string;
@@ -364,9 +362,9 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  error?: unknown;
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  reload: () => void;
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  message: React.ReactNode;
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- filled?: boolean | undefined;
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- status?: string | undefined;
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- reactElement?: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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+ filled?: boolean;
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+ status?: string;
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+ reactElement?: React.ReactElement;
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  };
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  }) => React.JSX.Element | undefined;
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  renderProps: any;
@@ -377,7 +375,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  setLoading(abortController: AbortController): void;
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  setMessage(messageText: string): void;
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  setRendered(props: {
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- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>>;
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+ reactElement: React.ReactElement;
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  features: Map<string, Feature>;
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  layout: any;
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  maxHeightReached: boolean;
@@ -15,8 +15,8 @@ export default function FeatureDensityMixin(): import("mobx-state-tree").IModelT
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  */
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  userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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  }, {
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- featureDensityStatsP: Promise<FeatureDensityStats> | undefined;
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- featureDensityStats: FeatureDensityStats | undefined;
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+ featureDensityStatsP: undefined | Promise<FeatureDensityStats>;
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+ featureDensityStats: undefined | FeatureDensityStats;
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  currStatsBpPerPx: number;
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  } & {
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  /**
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = FeatureDensityMixin;
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  /* eslint-disable @typescript-eslint/no-explicit-any */
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  const react_1 = __importDefault(require("react"));
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  const configuration_1 = require("@jbrowse/core/configuration");
@@ -186,4 +187,3 @@ function FeatureDensityMixin() {
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  },
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  }));
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  }
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- exports.default = FeatureDensityMixin;
@@ -1,5 +1,6 @@
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  "use strict";
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = TrackHeightMixin;
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  const configuration_1 = require("@jbrowse/core/configuration");
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  const mobx_state_tree_1 = require("mobx-state-tree");
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  const minDisplayHeight = 20;
@@ -52,4 +53,3 @@ function TrackHeightMixin() {
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  },
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  }));
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  }
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- exports.default = TrackHeightMixin;
@@ -1,5 +1,6 @@
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  "use strict";
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = autorunFeatureDensityStats;
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  const util_1 = require("@jbrowse/core/util");
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  const mobx_state_tree_1 = require("mobx-state-tree");
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  // stats estimation autorun calls getFeatureDensityStats against the data
@@ -38,4 +39,3 @@ async function autorunFeatureDensityStats(self) {
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  }
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  }
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  }
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- exports.default = autorunFeatureDensityStats;
@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- exports.renderBaseLinearDisplaySvg = void 0;
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+ exports.renderBaseLinearDisplaySvg = renderBaseLinearDisplaySvg;
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  const react_1 = __importDefault(require("react"));
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  const util_1 = require("@jbrowse/core/util");
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  const serverSideRenderedBlock_1 = __importStar(require("./serverSideRenderedBlock"));
@@ -80,4 +80,3 @@ async function renderBaseLinearDisplaySvg(self, opts) {
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  react_1.default.createElement(util_1.ReactRendering, { rendering: rendering })))));
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  })));
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  }
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- exports.renderBaseLinearDisplaySvg = renderBaseLinearDisplaySvg;
@@ -20,7 +20,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
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  }, {
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  renderInProgress: AbortController | undefined;
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  filled: boolean;
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- reactElement: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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+ reactElement: React.ReactElement | undefined;
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  features: Map<string, Feature> | undefined;
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  layout: any;
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  status: string;
@@ -32,9 +32,9 @@ declare const blockState: import("mobx-state-tree").IModelType<{
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  error?: unknown;
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  reload: () => void;
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  message: React.ReactNode;
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- filled?: boolean | undefined;
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- status?: string | undefined;
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- reactElement?: React.ReactElement<any, string | React.JSXElementConstructor<any>> | undefined;
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+ filled?: boolean;
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+ status?: string;
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+ reactElement?: React.ReactElement;
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  };
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  }) => React.JSX.Element | undefined;
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  renderProps: any;
@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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- exports.renderBlockData = void 0;
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+ exports.renderBlockData = renderBlockData;
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  const mobx_state_tree_1 = require("mobx-state-tree");
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  const configuration_1 = require("@jbrowse/core/configuration");
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  const util_1 = require("@jbrowse/core/util");
@@ -207,7 +207,6 @@ function renderBlockData(self, optDisplay) {
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  return { displayError: e };
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  }
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  }
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- exports.renderBlockData = renderBlockData;
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  async function renderBlockEffect(props, signal, self) {
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  if (!props) {
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  return;
@@ -1,6 +1,8 @@
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  "use strict";
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  Object.defineProperty(exports, "__esModule", { value: true });
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- exports.getFeatureDensityStatsPre = exports.getId = exports.getDisplayStr = void 0;
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+ exports.getDisplayStr = getDisplayStr;
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+ exports.getId = getId;
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+ exports.getFeatureDensityStatsPre = getFeatureDensityStatsPre;
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  const util_1 = require("@jbrowse/core/util");
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  const tracks_1 = require("@jbrowse/core/util/tracks");
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  const mobx_state_tree_1 = require("mobx-state-tree");
@@ -17,7 +19,6 @@ function getDisplayStr(totalBytes) {
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  }
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  return displayBp;
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  }
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- exports.getDisplayStr = getDisplayStr;
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  // stabilize clipid under test for snapshot
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  function getId(id, index) {
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  const notJest = typeof jest === 'undefined';
@@ -25,7 +26,6 @@ function getId(id, index) {
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  .filter(f => !!f)
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  .join('-');
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  }
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- exports.getId = getId;
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  async function getFeatureDensityStatsPre(self) {
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  const view = (0, util_1.getContainingView)(self);
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  const regions = view.staticBlocks.contentBlocks;
@@ -48,4 +48,3 @@ async function getFeatureDensityStatsPre(self) {
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  },
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  });
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  }
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- exports.getFeatureDensityStatsPre = getFeatureDensityStatsPre;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = BasicTrackF;
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  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  function BasicTrackF(pm) {
@@ -15,4 +16,3 @@ function BasicTrackF(pm) {
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  });
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  });
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  }
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- exports.default = BasicTrackF;
@@ -3,6 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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  return (mod && mod.__esModule) ? mod : { "default": mod };
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  };
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = FeatureTrackF;
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  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
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  const configSchema_1 = __importDefault(require("./configSchema"));
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  function FeatureTrackF(pm) {
@@ -16,4 +17,3 @@ function FeatureTrackF(pm) {
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  });
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  });
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  }
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- exports.default = FeatureTrackF;
@@ -1,5 +1,6 @@
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  "use strict";
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  Object.defineProperty(exports, "__esModule", { value: true });
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+ exports.default = LaunchLinearGenomeViewF;
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  const util_1 = require("@jbrowse/core/util");
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  const searchUtils_1 = require("../searchUtils");
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  function LaunchLinearGenomeViewF(pluginManager) {
@@ -52,7 +53,6 @@ function LaunchLinearGenomeViewF(pluginManager) {
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  }
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54
  });
54
55
  }
55
- exports.default = LaunchLinearGenomeViewF;
56
56
  function tryTrack(model, trackId, idsNotFound) {
57
57
  try {
58
58
  model.showTrack(trackId);
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.configSchemaFactory = void 0;
3
+ exports.configSchemaFactory = configSchemaFactory;
4
4
  const configuration_1 = require("@jbrowse/core/configuration");
5
5
  const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
6
6
  /**
@@ -21,4 +21,3 @@ function configSchemaFactory(pluginManager) {
21
21
  explicitlyTyped: true,
22
22
  });
23
23
  }
24
- exports.configSchemaFactory = configSchemaFactory;
@@ -1,6 +1,7 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  exports.stateModelFactory = exports.configSchemaFactory = void 0;
4
+ exports.default = LinearBareDisplayF;
4
5
  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
5
6
  // locals
6
7
  const configSchema_1 = require("./configSchema");
@@ -20,7 +21,6 @@ function LinearBareDisplayF(pluginManager) {
20
21
  });
21
22
  });
22
23
  }
23
- exports.default = LinearBareDisplayF;
24
24
  var configSchema_2 = require("./configSchema");
25
25
  Object.defineProperty(exports, "configSchemaFactory", { enumerable: true, get: function () { return configSchema_2.configSchemaFactory; } });
26
26
  var model_2 = require("./model");
@@ -1,4 +1,3 @@
1
- /// <reference types="react" />
2
1
  import { AnyConfigurationSchemaType } from '@jbrowse/core/configuration';
3
2
  /**
4
3
  * #stateModel LinearBareDisplay
@@ -34,7 +33,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
34
33
  }, {
35
34
  renderInProgress: AbortController | undefined;
36
35
  filled: boolean;
37
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
36
+ reactElement: import("react").ReactElement | undefined;
38
37
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
39
38
  layout: any;
40
39
  status: string;
@@ -46,9 +45,9 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
46
45
  error?: unknown;
47
46
  reload: () => void;
48
47
  message: import("react").ReactNode;
49
- filled?: boolean | undefined;
50
- status?: string | undefined;
51
- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
48
+ filled?: boolean;
49
+ status?: string;
50
+ reactElement?: import("react").ReactElement;
52
51
  };
53
52
  }) => import("react").JSX.Element | undefined;
54
53
  renderProps: any;
@@ -59,7 +58,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
59
58
  setLoading(abortController: AbortController): void;
60
59
  setMessage(messageText: string): void;
61
60
  setRendered(props: {
62
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
61
+ reactElement: import("react").ReactElement;
63
62
  features: Map<string, import("@jbrowse/core/util").Feature>;
64
63
  layout: any;
65
64
  maxHeightReached: boolean;
@@ -77,9 +76,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
77
76
  };
78
77
  fetchSizeLimit: {
79
78
  type: string;
80
- defaultValue: number; /**
81
- * #method
82
- */
79
+ defaultValue: number;
83
80
  description: string;
84
81
  };
85
82
  height: {
@@ -131,8 +128,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
131
128
  error: unknown;
132
129
  message: string | undefined;
133
130
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
134
- onHorizontalScroll?: Function | undefined;
135
- blockState?: Record<string, any> | undefined;
131
+ onHorizontalScroll?: Function;
132
+ blockState?: Record<string, any>;
136
133
  }>;
137
134
  readonly DisplayBlurb: import("react").FC<{
138
135
  model: {
@@ -157,12 +154,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
157
154
  readonly parentTrack: any;
158
155
  renderProps(): any;
159
156
  readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType;
160
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
157
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
161
158
  trackMenuItems(): import("@jbrowse/core/ui").MenuItem[];
162
159
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
163
160
  regionCannotBeRendered(): null;
164
161
  } & {
165
- setMessage(arg?: string | undefined): void;
162
+ setMessage(arg?: string): void;
166
163
  setError(error?: unknown): void;
167
164
  setRpcDriverName(rpcDriverName: string): void;
168
165
  reload(): void;
@@ -171,14 +168,12 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
171
168
  } & {
172
169
  readonly height: number;
173
170
  } & {
174
- setScrollTop(scrollTop: number): void; /**
175
- * #method
176
- */
171
+ setScrollTop(scrollTop: number): void;
177
172
  setHeight(displayHeight: number): number;
178
173
  resizeHeight(distance: number): number;
179
174
  } & {
180
- featureDensityStatsP: Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats> | undefined;
181
- featureDensityStats: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined;
175
+ featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
176
+ featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats;
182
177
  currStatsBpPerPx: number;
183
178
  } & {
184
179
  readonly currentBytesRequested: number;
@@ -190,10 +185,10 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
190
185
  afterAttach(): void;
191
186
  } & {
192
187
  setCurrStatsBpPerPx(n: number): void;
193
- setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
188
+ setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
194
189
  getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>;
195
190
  setFeatureDensityStatsP(arg: any): void;
196
- setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats | undefined): void;
191
+ setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void;
197
192
  clearFeatureDensityStats(): void;
198
193
  } & {
199
194
  readonly regionTooLarge: boolean;
@@ -202,8 +197,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
202
197
  regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features";
203
198
  regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react").JSX.Element | null;
204
199
  } & {
205
- featureIdUnderMouse: string | undefined;
206
- contextMenuFeature: import("@jbrowse/core/util").Feature | undefined;
200
+ featureIdUnderMouse: undefined | string;
201
+ contextMenuFeature: undefined | import("@jbrowse/core/util").Feature;
207
202
  } & {
208
203
  readonly blockType: "dynamicBlocks" | "staticBlocks";
209
204
  readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -211,7 +206,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
211
206
  readonly renderDelay: number;
212
207
  readonly TooltipComponent: import("react").FC<any>;
213
208
  readonly selectedFeatureId: string | undefined;
214
- readonly DisplayMessageComponent: import("react").FC<any> | undefined;
209
+ readonly DisplayMessageComponent: undefined | import("react").FC<any>;
215
210
  } & {
216
211
  readonly features: import("@jbrowse/core/util/compositeMap").default<string, import("@jbrowse/core/util").Feature>;
217
212
  readonly featureUnderMouse: import("@jbrowse/core/util").Feature | undefined;
@@ -224,8 +219,8 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
224
219
  selectFeature(feature: import("@jbrowse/core/util").Feature): void;
225
220
  navToFeature(feature: import("@jbrowse/core/util").Feature): void;
226
221
  clearFeatureSelection(): void;
227
- setFeatureIdUnderMouse(feature?: string | undefined): void;
228
- setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature | undefined): void;
222
+ setFeatureIdUnderMouse(feature?: string): void;
223
+ setContextMenuFeature(feature?: import("@jbrowse/core/util").Feature): void;
229
224
  } & {
230
225
  reload(): Promise<void>;
231
226
  } & {
@@ -274,7 +269,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
274
269
  }, {
275
270
  renderInProgress: AbortController | undefined;
276
271
  filled: boolean;
277
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
272
+ reactElement: import("react").ReactElement | undefined;
278
273
  features: Map<string, import("@jbrowse/core/util").Feature> | undefined;
279
274
  layout: any;
280
275
  status: string;
@@ -286,9 +281,9 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
286
281
  error?: unknown;
287
282
  reload: () => void;
288
283
  message: import("react").ReactNode;
289
- filled?: boolean | undefined;
290
- status?: string | undefined;
291
- reactElement?: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>> | undefined;
284
+ filled?: boolean;
285
+ status?: string;
286
+ reactElement?: import("react").ReactElement;
292
287
  };
293
288
  }) => import("react").JSX.Element | undefined;
294
289
  renderProps: any;
@@ -299,7 +294,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
299
294
  setLoading(abortController: AbortController): void;
300
295
  setMessage(messageText: string): void;
301
296
  setRendered(props: {
302
- reactElement: import("react").ReactElement<any, string | import("react").JSXElementConstructor<any>>;
297
+ reactElement: import("react").ReactElement;
303
298
  features: Map<string, import("@jbrowse/core/util").Feature>;
304
299
  layout: any;
305
300
  maxHeightReached: boolean;
@@ -317,9 +312,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
317
312
  };
318
313
  fetchSizeLimit: {
319
314
  type: string;
320
- defaultValue: number; /**
321
- * #method
322
- */
315
+ defaultValue: number;
323
316
  description: string;
324
317
  };
325
318
  height: {
@@ -1,6 +1,6 @@
1
1
  "use strict";
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
- exports.stateModelFactory = void 0;
3
+ exports.stateModelFactory = stateModelFactory;
4
4
  const configuration_1 = require("@jbrowse/core/configuration");
5
5
  const tracks_1 = require("@jbrowse/core/util/tracks");
6
6
  const mobx_state_tree_1 = require("mobx-state-tree");
@@ -46,4 +46,3 @@ function stateModelFactory(configSchema) {
46
46
  };
47
47
  });
48
48
  }
49
- exports.stateModelFactory = stateModelFactory;
@@ -4,6 +4,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
4
4
  };
5
5
  Object.defineProperty(exports, "__esModule", { value: true });
6
6
  exports.configSchema = exports.modelFactory = void 0;
7
+ exports.default = LinearBasicDisplay;
7
8
  const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
8
9
  const BaseLinearDisplay_1 = require("../BaseLinearDisplay");
9
10
  // locals
@@ -23,7 +24,6 @@ function LinearBasicDisplay(pluginManager) {
23
24
  });
24
25
  });
25
26
  }
26
- exports.default = LinearBasicDisplay;
27
27
  var model_2 = require("./model");
28
28
  Object.defineProperty(exports, "modelFactory", { enumerable: true, get: function () { return __importDefault(model_2).default; } });
29
29
  var configSchema_2 = require("./configSchema");