@jbrowse/plugin-linear-genome-view 2.1.2 → 2.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearGenomeView/components/ImportForm.js +37 -41
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +2 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +14 -8
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +26 -6
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchBox.js +36 -32
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +7 -4
- package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/util.d.ts +1 -0
- package/dist/LinearGenomeView/components/util.js +14 -1
- package/dist/LinearGenomeView/components/util.js.map +1 -1
- package/dist/LinearGenomeView/index.d.ts +1 -1
- package/esm/LinearGenomeView/components/ImportForm.js +38 -42
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +2 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +14 -8
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +26 -6
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js +37 -33
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.js +7 -4
- package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/esm/LinearGenomeView/components/util.d.ts +1 -0
- package/esm/LinearGenomeView/components/util.js +12 -0
- package/esm/LinearGenomeView/components/util.js.map +1 -1
- package/esm/LinearGenomeView/index.d.ts +1 -1
- package/package.json +2 -2
- package/src/LinearGenomeView/components/ImportForm.tsx +39 -42
- package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +4 -4
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +27 -8
- package/src/LinearGenomeView/components/SearchBox.tsx +38 -35
- package/src/LinearGenomeView/components/SearchResultsDialog.tsx +7 -4
- package/src/LinearGenomeView/components/TrackLabel.tsx +3 -1
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +2 -2
- package/src/LinearGenomeView/components/util.ts +12 -0
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@@ -4,11 +4,10 @@ import { observer } from 'mobx-react';
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import { getSession } from '@jbrowse/core/util';
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import { Button, CircularProgress, Container, Grid } from '@mui/material';
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import { ErrorMessage, AssemblySelector } from '@jbrowse/core/ui';
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-
import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
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import CloseIcon from '@mui/icons-material/Close';
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// locals
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import RefNameAutocomplete from './RefNameAutocomplete';
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import { fetchResults } from './util';
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import { fetchResults, splitLast } from './util';
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import { WIDGET_HEIGHT } from '..';
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const SearchResultsDialog = lazy(() => import('./SearchResultsDialog'));
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const useStyles = makeStyles()(theme => ({
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@@ -30,6 +29,7 @@ const ImportForm = observer(({ model }) => {
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const { rankSearchResults, isSearchDialogDisplayed, error } = model;
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const [selectedAsm, setSelectedAsm] = useState(assemblyNames[0]);
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const [importError, setImportError] = useState(error);
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const [option, setOption] = useState();
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const searchScope = model.searchScope(selectedAsm);
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const assembly = assemblyManager.get(selectedAsm);
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const assemblyError = assemblyNames.length
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@@ -39,55 +39,51 @@ const ImportForm = observer(({ model }) => {
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const err = assemblyError || importError;
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const [myVal, setValue] = useState('');
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const value = myVal || ((_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName);
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function navToOption(option) {
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const location = option.getLocation();
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const trackId = option.getTrackId();
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if (location) {
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model.navToLocString(location, selectedAsm);
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if (trackId) {
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model.showTrack(trackId);
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}
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}
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}
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// gets a string as input, or use stored option results from previous query,
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// then re-query and
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// 1) if it has multiple results: pop a dialog
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// 2) if it's a single result navigate to it
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// 3) else assume it's a locstring and navigate to it
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async function handleSelectedRegion(input) {
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if (!option) {
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return;
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}
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let trackId = option.getTrackId();
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let location = input || option.getLocation() || '';
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const [ref, rest] = location.split(':');
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const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
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try {
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// - or looks like locstring
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// then just navigate as if it were a locstring
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if (allRefs.includes(location) ||
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(allRefs.includes(ref) &&
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rest !== undefined &&
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!Number.isNaN(parseInt(rest, 10)))) {
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model.navToLocString(location, selectedAsm);
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if ((option === null || option === void 0 ? void 0 : option.getDisplayString()) === input && option.hasLocation()) {
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navToOption(option);
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}
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else {
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const
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textSearchManager,
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assembly,
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});
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if (results.length > 1) {
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model.setSearchResults(results, input.toLowerCase());
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return;
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const [ref, rest] = splitLast(input, ':');
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const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
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if (allRefs.includes(input) ||
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(allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
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model.navToLocString(input, selectedAsm);
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}
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else
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else {
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const results = await fetchResults({
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queryString: input,
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searchType: 'exact',
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searchScope,
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rankSearchResults,
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textSearchManager,
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assembly,
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});
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if (results.length > 1) {
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model.setSearchResults(results, input.toLowerCase());
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}
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else if (results.length === 1) {
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navToOption(results[0]);
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}
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else {
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model.navToLocString(input, selectedAsm);
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}
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}
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}
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}
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@@ -124,7 +120,7 @@ const ImportForm = observer(({ model }) => {
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searchScope,
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}), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value,
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// note: minWidth 270 accomodates full width of helperText
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minWidth: 270, onChange: str => setValue(str), TextFieldProps: {
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minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
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variant: 'outlined',
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helperText: 'Enter sequence name, feature name, or location',
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style: { minWidth: '175px' },
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@@ -1 +1 @@
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1
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+
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@@ -96,7 +96,8 @@ function SVGTracks({ displayResults, model, offset, }) {
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return (React.createElement(React.Fragment, null, displayResults.map(({ track, result }) => {
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const current = offset;
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const trackName = getConf(track, 'name') ||
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-
`Reference sequence (${readConfObject(getParent(track.configuration), '
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+
`Reference sequence (${readConfObject(getParent(track.configuration), 'displayName') ||
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+
readConfObject(getParent(track.configuration), 'name')})`;
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const display = track.displays[0];
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offset += display.height + paddingHeight + textHeight;
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return (React.createElement("g", { key: track.configuration.trackId, transform: `translate(0 ${current})` },
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@@ -1 +1 @@
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1
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@@ -28,10 +28,13 @@ declare const Cytobands: ({ overview, block, assembly, }: {
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@@ -62,17 +65,17 @@ declare const Cytobands: ({ overview, block, assembly, }: {
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[
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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configuration: import("mobx-state-tree").IMaybe<import("mobx-state-tree").IReferenceType<import("mobx-state-tree").IAnyType>>;
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} & {
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@@ -124,17 +130,17 @@ declare const Cytobands: ({ overview, block, assembly, }: {
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getAdapterMapEntry(adapterConf: unknown, options: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
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forwardMap: {
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[key: string]: string;
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getRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
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}>;
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getReverseRefNameMapForAdapter(adapterConf: unknown, opts: import("@jbrowse/core/assemblyManager/assembly").BaseOptions): Promise<{
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[
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
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block: ContentBlock;
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@@ -6,7 +6,6 @@ import { Autocomplete, CircularProgress, IconButton, InputAdornment, TextField,
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// icons
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import SearchIcon from '@mui/icons-material/Search';
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import HelpIcon from '@mui/icons-material/Help';
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-
import { dedupe } from './util';
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// lazy
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11
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const HelpDialog = lazy(() => import('./HelpDialog'));
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// the logic of this method is to only apply a filter to RefSequenceResults
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@@ -29,8 +28,8 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
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const [inputValue, setInputValue] = useState('');
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const [searchOptions, setSearchOptions] = useState();
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const debouncedSearch = useDebounce(currentSearch, 300);
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-
const { coarseVisibleLocStrings, hasDisplayedRegions } = model;
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const assembly = assemblyName ? assemblyManager.get(assemblyName) : undefined;
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+
const { coarseVisibleLocStrings, hasDisplayedRegions } = model;
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|
// eslint-disable-next-line react-hooks/exhaustive-deps
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const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
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const options = useMemo(() => regions.map(option => ({
|
|
@@ -50,9 +49,30 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
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setLoaded(false);
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const results = await fetchResults(debouncedSearch);
|
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if (active) {
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-
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-
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-
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+
const m = {};
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|
+
for (let i = 0; i < results.length; i++) {
|
|
54
|
+
const r = results[i];
|
|
55
|
+
const d = r.getDisplayString();
|
|
56
|
+
if (!m[d]) {
|
|
57
|
+
m[d] = [];
|
|
58
|
+
}
|
|
59
|
+
m[d].push(r);
|
|
60
|
+
}
|
|
61
|
+
const display = Object.entries(m).map(([displayString, results]) => {
|
|
62
|
+
if (results.length === 1) {
|
|
63
|
+
return { result: results[0] };
|
|
64
|
+
}
|
|
65
|
+
else {
|
|
66
|
+
return {
|
|
67
|
+
result: new BaseResult({
|
|
68
|
+
displayString,
|
|
69
|
+
results,
|
|
70
|
+
label: displayString,
|
|
71
|
+
}),
|
|
72
|
+
};
|
|
73
|
+
}
|
|
74
|
+
});
|
|
75
|
+
setSearchOptions(display);
|
|
56
76
|
setLoaded(true);
|
|
57
77
|
}
|
|
58
78
|
}
|
|
@@ -74,7 +94,7 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
|
|
|
74
94
|
// notes on implementation:
|
|
75
95
|
// The selectOnFocus setting helps highlight the field when clicked
|
|
76
96
|
return (React.createElement(React.Fragment, null,
|
|
77
|
-
React.createElement(Autocomplete, { id: `refNameAutocomplete-${model.id}`, "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (
|
|
97
|
+
React.createElement(Autocomplete, { id: `refNameAutocomplete-${model.id}`, "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (_event, newInputValue) => {
|
|
78
98
|
setInputValue(newInputValue);
|
|
79
99
|
onChange === null || onChange === void 0 ? void 0 : onChange(newInputValue);
|
|
80
100
|
}, loadingText: "loading results", open: open, onOpen: () => setOpen(true), onClose: () => {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"RefNameAutocomplete.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RefNameAutocomplete.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC3E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAA;AACzE,OAAO,UAAU,EAAE,EACjB,iBAAiB,GAClB,MAAM,sCAAsC,CAAA;AAC7C,OAAO,EACL,YAAY,EACZ,gBAAgB,EAChB,UAAU,EACV,cAAc,EACd,SAAS,GAEV,MAAM,eAAe,CAAA;AAEtB,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,QAAQ,MAAM,0BAA0B,CAAA;
|
|
1
|
+
{"version":3,"file":"RefNameAutocomplete.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RefNameAutocomplete.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,EAAE,QAAQ,EAAE,IAAI,EAAE,OAAO,EAAE,SAAS,EAAE,QAAQ,EAAE,MAAM,OAAO,CAAA;AAC3E,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,UAAU,EAAE,WAAW,EAAE,WAAW,EAAE,MAAM,oBAAoB,CAAA;AACzE,OAAO,UAAU,EAAE,EACjB,iBAAiB,GAClB,MAAM,sCAAsC,CAAA;AAC7C,OAAO,EACL,YAAY,EACZ,gBAAgB,EAChB,UAAU,EACV,cAAc,EACd,SAAS,GAEV,MAAM,eAAe,CAAA;AAEtB,QAAQ;AACR,OAAO,UAAU,MAAM,4BAA4B,CAAA;AACnD,OAAO,QAAQ,MAAM,0BAA0B,CAAA;AAK/C,OAAO;AACP,MAAM,UAAU,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,cAAc,CAAC,CAAC,CAAA;AAOrD,2EAA2E;AAC3E,4EAA4E;AAC5E,oCAAoC;AACpC,SAAS,aAAa,CAAC,OAAiB,EAAE,WAAmB;IAC3D,OAAO,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;QAC7B,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;QACzB,OAAO,CACL,MAAM,CAAC,QAAQ,EAAE,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;YACrD,MAAM,CAAC,aAAa,CACrB,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,SAAS,mBAAmB,CAAC,EAC3B,KAAK,EACL,QAAQ,EACR,YAAY,EACZ,KAAK,EACL,YAAY,EACZ,QAAQ,EACR,KAAK,EACL,QAAQ,GAAG,IAAI,EACf,QAAQ,GAAG,GAAG,EACd,cAAc,GAAG,EAAE,GAYpB;IACC,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,CAAC,qBAAqB,EAAE,sBAAsB,CAAC,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAA;IACvE,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IACtD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,QAAQ,CAAC,EAAE,CAAC,CAAA;IAChD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,QAAQ,EAAY,CAAA;IAC9D,MAAM,eAAe,GAAG,WAAW,CAAC,aAAa,EAAE,GAAG,CAAC,CAAA;IACvD,MAAM,QAAQ,GAAG,YAAY,CAAC,CAAC,CAAC,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IAC7E,MAAM,EAAE,uBAAuB,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IAE9D,uDAAuD;IACvD,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IAEvC,MAAM,OAAO,GAAG,OAAO,CACrB,GAAG,EAAE,CACH,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QACrB,MAAM,EAAE,IAAI,iBAAiB,CAAC;YAC5B,OAAO,EAAE,MAAM,CAAC,OAAO;YACvB,KAAK,EAAE,MAAM,CAAC,OAAO;YACrB,gBAAgB,EAAE,SAAS;SAC5B,CAAC;KACH,CAAC,CAAC,EACL,CAAC,OAAO,CAAC,CACV,CAAA;IAED,SAAS,CAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,IAAI,CAEhB;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI;gBACF,IAAI,eAAe,KAAK,EAAE,IAAI,CAAC,YAAY,EAAE;oBAC3C,OAAM;iBACP;gBAED,SAAS,CAAC,KAAK,CAAC,CAAA;gBAChB,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC,eAAe,CAAC,CAAA;gBACnD,IAAI,MAAM,EAAE;oBACV,MAAM,CAAC,GAAoC,EAAE,CAAA;oBAE7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;wBACvC,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAA;wBACpB,MAAM,CAAC,GAAG,CAAC,CAAC,gBAAgB,EAAE,CAAA;wBAC9B,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE;4BACT,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAA;yBACV;wBACD,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;qBACb;oBACD,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,aAAa,EAAE,OAAO,CAAC,EAAE,EAAE;wBACjE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;4BACxB,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CAAA;yBAC9B;6BAAM;4BACL,OAAO;gCACL,MAAM,EAAE,IAAI,UAAU,CAAC;oCACrB,aAAa;oCACb,OAAO;oCACP,KAAK,EAAE,aAAa;iCACrB,CAAC;6BACH,CAAA;yBACF;oBACH,CAAC,CAAC,CAAA;oBAEF,gBAAgB,CAAC,OAAO,CAAC,CAAA;oBACzB,SAAS,CAAC,IAAI,CAAC,CAAA;iBAChB;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,MAAM,EAAE;oBACV,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;iBAChC;aACF;QACH,CAAC,CAAC,EAAE,CAAA;QAEJ,OAAO,GAAG,EAAE;YACV,MAAM,GAAG,KAAK,CAAA;QAChB,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC,CAAA;IAEjE,MAAM,WAAW,GAAG,uBAAuB,IAAI,KAAK,IAAI,EAAE,CAAA;IAE1D,qCAAqC;IACrC,6CAA6C;IAC7C,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CACpB,IAAI,CAAC,GAAG,CAAC,WAAW,CAAC,WAAW,EAAE,EAAE,CAAC,GAAG,EAAE,EAAE,QAAQ,CAAC,EACrD,GAAG,CACJ,CAAA;IAED,2BAA2B;IAC3B,mEAAmE;IACnE,OAAO,CACL;QACE,oBAAC,YAAY,IACX,EAAE,EAAE,uBAAuB,KAAK,CAAC,EAAE,EAAE,iBACzB,cAAc,EAC1B,eAAe,QACf,gBAAgB,QAChB,QAAQ,EAAE,CAAC,YAAY,EACvB,QAAQ,QACR,kBAAkB,QAClB,aAAa,QACb,KAAK,EAAE,EAAE,GAAG,KAAK,EAAE,KAAK,EAAE,EAC1B,KAAK,EAAE,WAAW,EAClB,OAAO,EAAE,CAAC,MAAM,EAChB,UAAU,EAAE,UAAU,EACtB,aAAa,EAAE,CAAC,MAAM,EAAE,aAAa,EAAE,EAAE;gBACvC,aAAa,CAAC,aAAa,CAAC,CAAA;gBAC5B,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,aAAa,CAAC,CAAA;YAC3B,CAAC,EACD,WAAW,EAAC,iBAAiB,EAC7B,IAAI,EAAE,IAAI,EACV,MAAM,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EAC3B,OAAO,EAAE,GAAG,EAAE;gBACZ,OAAO,CAAC,KAAK,CAAC,CAAA;gBACd,SAAS,CAAC,IAAI,CAAC,CAAA;gBACf,IAAI,mBAAmB,EAAE;oBACvB,gBAAgB,CAAC,EAAE,CAAC,CAAA;oBACpB,gBAAgB,CAAC,SAAS,CAAC,CAAA;iBAC5B;YACH,CAAC,EACD,QAAQ,EAAE,CAAC,MAAM,EAAE,cAAc,EAAE,EAAE;gBACnC,IAAI,CAAC,cAAc,IAAI,CAAC,YAAY,EAAE;oBACpC,OAAM;iBACP;gBAED,IAAI,OAAO,cAAc,KAAK,QAAQ,EAAE;oBACtC,0CAA0C;oBAC1C,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,IAAI,UAAU,CAAC,EAAE,KAAK,EAAE,cAAc,EAAE,CAAC,CAAC,CAAA;iBACtD;qBAAM;oBACL,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,cAAc,CAAC,MAAM,CAAC,CAAA;iBAClC;gBACD,aAAa,CAAC,WAAW,CAAC,CAAA;YAC5B,CAAC,EACD,OAAO,EAAE,CAAC,CAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,aAAa,EACzD,iBAAiB,EAAE,MAAM,CAAC,EAAE,CAAC,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,KAAK,MAAK,aAAa,EAC5D,aAAa,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;gBACjC,MAAM,QAAQ,GAAG,aAAa,CAC5B,OAAO,EACP,MAAM,CAAC,UAAU,CAAC,iBAAiB,EAAE,CACtC,CAAA;gBACD,OAAO;oBACL,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;oBACzB,GAAG,CAAC,QAAQ,CAAC,MAAM,GAAG,GAAG;wBACvB,CAAC,CAAC;4BACE;gCACE,KAAK,EAAE,aAAa;gCACpB,MAAM,EAAE,IAAI,UAAU,CAAC;oCACrB,KAAK,EAAE,8BAA8B;iCACtC,CAAC;6BACH;yBACF;wBACH,CAAC,CAAC,EAAE,CAAC;iBACR,CAAA;YACH,CAAC,EACD,WAAW,EAAE,MAAM,CAAC,EAAE;gBACpB,MAAM,EAAE,UAAU,EAAE,UAAU,GAAG,EAAE,EAAE,GAAG,cAAc,CAAA;gBACtD,OAAO,CACL,oBAAC,SAAS,IACR,MAAM,EAAE,GAAG,EAAE;oBACX,gEAAgE;oBAChE,yBAAyB;oBACzB,aAAa,CAAC,WAAW,CAAC,KAExB,MAAM,KACN,cAAc,EAClB,UAAU,EAAE,UAAU,EACtB,UAAU,EAAE;wBACV,GAAG,MAAM,CAAC,UAAU;wBACpB,GAAG,UAAU;wBAEb,YAAY,EAAE,CACZ;4BACG,OAAO,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CACtB,oBAAC,gBAAgB,IAAC,KAAK,EAAC,SAAS,EAAC,IAAI,EAAE,EAAE,GAAI,CAC/C,CAAC,CAAC,CAAC,CACF,oBAAC,cAAc,IAAC,QAAQ,EAAC,KAAK,EAAC,KAAK,EAAE,EAAE,WAAW,EAAE,CAAC,EAAE;gCACtD,oBAAC,UAAU,IAAC,QAAQ,EAAC,OAAO,GAAG;gCAC9B,QAAQ,CAAC,CAAC,CAAC,CACV,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,sBAAsB,CAAC,IAAI,CAAC,EAC3C,IAAI,EAAC,OAAO;oCAEZ,oBAAC,QAAQ,IAAC,QAAQ,EAAC,OAAO,GAAG,CAClB,CACd,CAAC,CAAC,CAAC,IAAI,CACO,CAClB;4BACA,MAAM,CAAC,UAAU,CAAC,YAAY,CAC9B,CACJ;qBACF,EACD,WAAW,EAAC,qBAAqB,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,GAC/C,CACH,CAAA;YACH,CAAC,EACD,cAAc,EAAE,MAAM,CAAC,EAAE,CACvB,CAAC,OAAO,MAAM,KAAK,QAAQ;gBACzB,CAAC,CAAC,MAAM;gBACR,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,gBAAgB,EAAE,CAAC,IAAI,EAAE,GAE7C;QACD,qBAAqB,CAAC,CAAC,CAAC,CACvB,oBAAC,QAAQ,IAAC,QAAQ,EAAE,gCAAO;YACzB,oBAAC,UAAU,IAAC,WAAW,EAAE,GAAG,EAAE,CAAC,sBAAsB,CAAC,KAAK,CAAC,GAAI,CACvD,CACZ,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,mBAAmB,CAAC,CAAA"}
|
|
@@ -5,7 +5,7 @@ import { makeStyles } from 'tss-react/mui';
|
|
|
5
5
|
import { getSession } from '@jbrowse/core/util';
|
|
6
6
|
// locals
|
|
7
7
|
import RefNameAutocomplete from './RefNameAutocomplete';
|
|
8
|
-
import { fetchResults } from './util';
|
|
8
|
+
import { fetchResults, splitLast } from './util';
|
|
9
9
|
import { SPACING, WIDGET_HEIGHT } from '..';
|
|
10
10
|
const useStyles = makeStyles()(() => ({
|
|
11
11
|
headerRefName: {
|
|
@@ -21,48 +21,52 @@ function SearchBox({ model, showHelp, }) {
|
|
|
21
21
|
const assemblyName = assemblyNames[0];
|
|
22
22
|
const assembly = assemblyManager.get(assemblyName);
|
|
23
23
|
const searchScope = model.searchScope(assemblyName);
|
|
24
|
+
function navToOption(option) {
|
|
25
|
+
const location = option.getLocation();
|
|
26
|
+
const trackId = option.getTrackId();
|
|
27
|
+
if (location) {
|
|
28
|
+
model.navToLocString(location, assemblyName);
|
|
29
|
+
if (trackId) {
|
|
30
|
+
model.showTrack(trackId);
|
|
31
|
+
}
|
|
32
|
+
}
|
|
33
|
+
}
|
|
24
34
|
// gets a string as input, or use stored option results from previous query,
|
|
25
35
|
// then re-query and
|
|
26
36
|
// 1) if it has multiple results: pop a dialog
|
|
27
37
|
// 2) if it's a single result navigate to it
|
|
28
38
|
// 3) else assume it's a locstring and navigate to it
|
|
29
39
|
async function handleSelectedRegion(option) {
|
|
30
|
-
let trackId = option.getTrackId();
|
|
31
|
-
let location = option.getLocation();
|
|
32
|
-
const label = option.getLabel();
|
|
33
|
-
const [ref, rest] = location.split(':');
|
|
34
|
-
const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
|
|
35
40
|
try {
|
|
36
|
-
|
|
37
|
-
|
|
38
|
-
// - or looks like locString
|
|
39
|
-
// then just navigate as if it were a locString
|
|
40
|
-
if (allRefs.includes(location) ||
|
|
41
|
-
(allRefs.includes(ref) &&
|
|
42
|
-
rest !== undefined &&
|
|
43
|
-
!Number.isNaN(parseInt(rest, 10)))) {
|
|
44
|
-
model.navToLocString(location, assemblyName);
|
|
41
|
+
if (option.hasLocation()) {
|
|
42
|
+
navToOption(option);
|
|
45
43
|
}
|
|
46
44
|
else {
|
|
47
|
-
const
|
|
48
|
-
|
|
49
|
-
|
|
50
|
-
|
|
51
|
-
|
|
52
|
-
|
|
53
|
-
assembly,
|
|
54
|
-
});
|
|
55
|
-
if (results.length > 1) {
|
|
56
|
-
model.setSearchResults(results, label.toLowerCase());
|
|
57
|
-
return;
|
|
58
|
-
}
|
|
59
|
-
else if (results.length === 1) {
|
|
60
|
-
location = results[0].getLocation();
|
|
61
|
-
trackId = results[0].getTrackId();
|
|
45
|
+
const input = option.getLabel();
|
|
46
|
+
const [ref, rest] = splitLast(input, ':');
|
|
47
|
+
const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
|
|
48
|
+
if (allRefs.includes(input) ||
|
|
49
|
+
(allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
|
|
50
|
+
model.navToLocString(input, assemblyName);
|
|
62
51
|
}
|
|
63
|
-
|
|
64
|
-
|
|
65
|
-
|
|
52
|
+
else {
|
|
53
|
+
const results = await fetchResults({
|
|
54
|
+
queryString: input,
|
|
55
|
+
searchType: 'exact',
|
|
56
|
+
searchScope,
|
|
57
|
+
rankSearchResults,
|
|
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|
+
textSearchManager,
|
|
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|
+
assembly,
|
|
60
|
+
});
|
|
61
|
+
if (results.length > 1) {
|
|
62
|
+
model.setSearchResults(results, input.toLowerCase());
|
|
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|
+
}
|
|
64
|
+
else if (results.length === 1) {
|
|
65
|
+
navToOption(results[0]);
|
|
66
|
+
}
|
|
67
|
+
else {
|
|
68
|
+
model.navToLocString(input, assemblyName);
|
|
69
|
+
}
|
|
66
70
|
}
|
|
67
71
|
}
|
|
68
72
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,QAAQ,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAG/C,SAAS;AACT,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,YAAY,EAAE,MAAM,QAAQ,CAAA;
|
|
1
|
+
{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AACrC,OAAO,EAAE,QAAQ,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AAC/C,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAG/C,SAAS;AACT,OAAO,mBAAmB,MAAM,uBAAuB,CAAA;AACvD,OAAO,EAAE,YAAY,EAAE,SAAS,EAAE,MAAM,QAAQ,CAAA;AAChD,OAAO,EAAyB,OAAO,EAAE,aAAa,EAAE,MAAM,IAAI,CAAA;AAElE,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,QAAQ,EAAE,CAAA;IACxB,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,iBAAiB,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACtD,MAAM,EAAE,aAAa,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAClD,MAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,YAAY,CAAC,CAAA;IAEnD,SAAS,WAAW,CAAC,MAAkB;QACrC,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACnC,IAAI,QAAQ,EAAE;YACZ,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;YAC5C,IAAI,OAAO,EAAE;gBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;aACzB;SACF;IACH,CAAC;IAED,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,MAAkB;QACpD,IAAI;YACF,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE;gBACxB,WAAW,CAAC,MAAM,CAAC,CAAA;aACpB;iBAAM;gBACL,MAAM,KAAK,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;gBAC/B,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,SAAS,CAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACzC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,wBAAwB,KAAI,EAAE,CAAA;gBACxD,IACE,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;oBACvB,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EAC5D;oBACA,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;iBAC1C;qBAAM;oBACL,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC;wBACjC,WAAW,EAAE,KAAK;wBAClB,UAAU,EAAE,OAAO;wBACnB,WAAW;wBACX,iBAAiB;wBACjB,iBAAiB;wBACjB,QAAQ;qBACT,CAAC,CAAA;oBAEF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;wBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;qBACrD;yBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;wBAC/B,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;qBACxB;yBAAM;wBACL,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;qBAC1C;iBACF;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IACD,OAAO,CACL,oBAAC,mBAAmB,IAClB,QAAQ,EAAE,QAAQ,EAClB,QAAQ,EAAE,oBAAoB,EAC9B,YAAY,EAAE,YAAY,EAC1B,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,YAAY,CAAC;YACX,WAAW;YACX,WAAW;YACX,iBAAiB;YACjB,iBAAiB;YACjB,QAAQ;SACT,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE;YACd,OAAO,EAAE,UAAU;YACnB,SAAS,EAAE,OAAO,CAAC,aAAa;YAChC,KAAK,EAAE,EAAE,MAAM,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE;YAC7C,UAAU,EAAE;gBACV,KAAK,EAAE;oBACL,OAAO,EAAE,CAAC;oBACV,MAAM,EAAE,aAAa;oBACrB,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;iBACvD;aACF;SACF,GACD,CACH,CAAA;AACH,CAAC;AAED,eAAe,QAAQ,CAAC,SAAS,CAAC,CAAA"}
|
|
@@ -93,10 +93,13 @@ export default function SearchResultsDialog({ model, optAssemblyName, handleClos
|
|
|
93
93
|
React.createElement(TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
|
|
94
94
|
React.createElement(TableCell, { align: "right" },
|
|
95
95
|
React.createElement(Button, { onClick: () => {
|
|
96
|
-
|
|
97
|
-
|
|
98
|
-
|
|
99
|
-
|
|
96
|
+
const location = result.getLocation();
|
|
97
|
+
if (location) {
|
|
98
|
+
handleClick(location);
|
|
99
|
+
const resultTrackId = result.getTrackId();
|
|
100
|
+
if (resultTrackId) {
|
|
101
|
+
model.showTrack(resultTrackId);
|
|
102
|
+
}
|
|
100
103
|
}
|
|
101
104
|
handleClose();
|
|
102
105
|
}, color: "primary", variant: "contained" }, "Go"))))))))))),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"SearchResultsDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,MAAM,EAAE,iBAAiB,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EACL,MAAM,EACN,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,OAAO,EACP,UAAU,EACV,KAAK,EACL,KAAK,EACL,SAAS,EACT,SAAS,EACT,cAAc,EACd,SAAS,EACT,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAGjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,EAC1C,KAAK,EACL,eAAe,EACf,WAAW,GAKZ;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,OAAO,CAAC,CAAA;IACzC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,IAAI,YAAY,GAAG,eAAe,CAAA;IAClC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE;QACrC,YAAY,GAAG,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA;KACvD;IACD,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;KAC3C;IACD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,YAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,qBAAqB,CAAC,CAAA;KAC/D;IACD,MAAM,eAAe,GAAG,QAAQ,CAAC,OAAO,CAAA;IAExC,SAAS,WAAW,CAAC,QAAgB;QACnC,IAAI;YACF,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CACpC,MAAM,CAAC,EAAE,CAAC,QAAQ,KAAK,MAAM,CAAC,OAAO,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aAC7C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,MAAM,iBAAiB,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC1E,MAAM,aAAa,GAAG,iBAAiB,CACrC,iBAAiB,EACjB,OAAO,CAAC,KAAK,CAAC,EACd,OAAO,CACR,CAAA;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,MAAA,aAAa,CAAC,IAAI,0CAAE,KAAK,CAAA;aACjC;SACF;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW;QAC7C,oBAAC,WAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,oBAAC,UAAU,mBACG,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,IAAI,EAAC,OAAO;gBAEZ,oBAAC,SAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,oBAAC,OAAO,OAAG;QACX,oBAAC,aAAa,QACX,CAAC,CAAA,MAAA,KAAK,CAAC,aAAa,0CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,CAC9B,oBAAC,UAAU;;YACY,+BAAI,KAAK,CAAC,WAAW,CAAK,CACpC,CACd,CAAC,CAAC,CAAC,CACF;YACE,oBAAC,UAAU;;gBACW,+BAAI,KAAK,CAAC,WAAW,CAAK,CACnC;YACb,oBAAC,cAAc,IAAC,SAAS,EAAE,KAAK;gBAC9B,oBAAC,KAAK;oBACJ,oBAAC,SAAS;wBACR,oBAAC,QAAQ;4BACP,oBAAC,SAAS,eAAiB;4BAC3B,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;4BAC7C,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;4BAC1C,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;oBACZ,oBAAC,SAAS,QACP,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACjC,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE;wBAChC,oBAAC,SAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,IACrB,MAAM,CAAC,WAAW,EAAE,CACX;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO;4BACtB,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;oCACZ,
|
|
1
|
+
{"version":3,"file":"SearchResultsDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsDialog.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAC1C,OAAO,EAAE,MAAM,EAAE,iBAAiB,EAAE,OAAO,EAAE,MAAM,iBAAiB,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,oBAAoB,CAAA;AAC/C,OAAO,EACL,MAAM,EACN,MAAM,EACN,aAAa,EACb,aAAa,EACb,WAAW,EACX,OAAO,EACP,UAAU,EACV,KAAK,EACL,KAAK,EACL,SAAS,EACT,SAAS,EACT,cAAc,EACd,SAAS,EACT,QAAQ,EACR,UAAU,GACX,MAAM,eAAe,CAAA;AACtB,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAGjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,MAAM,CAAC,OAAO,UAAU,mBAAmB,CAAC,EAC1C,KAAK,EACL,eAAe,EACf,WAAW,GAKZ;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,MAAM,CAAC,OAAO,CAAC,CAAA;IACzC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,IAAI,YAAY,GAAG,eAAe,CAAA;IAClC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE;QACrC,YAAY,GAAG,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA;KACvD;IACD,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;KAC3C;IACD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,YAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,qBAAqB,CAAC,CAAA;KAC/D;IACD,MAAM,eAAe,GAAG,QAAQ,CAAC,OAAO,CAAA;IAExC,SAAS,WAAW,CAAC,QAAgB;QACnC,IAAI;YACF,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CACpC,MAAM,CAAC,EAAE,CAAC,QAAQ,KAAK,MAAM,CAAC,OAAO,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aAC7C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,MAAM,iBAAiB,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC1E,MAAM,aAAa,GAAG,iBAAiB,CACrC,iBAAiB,EACjB,OAAO,CAAC,KAAK,CAAC,EACd,OAAO,CACR,CAAA;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,MAAA,aAAa,CAAC,IAAI,0CAAE,KAAK,CAAA;aACjC;SACF;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO,CACL,oBAAC,MAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW;QAC7C,oBAAC,WAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,oBAAC,UAAU,mBACG,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,IAAI,EAAC,OAAO;gBAEZ,oBAAC,SAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,oBAAC,OAAO,OAAG;QACX,oBAAC,aAAa,QACX,CAAC,CAAA,MAAA,KAAK,CAAC,aAAa,0CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,CAC9B,oBAAC,UAAU;;YACY,+BAAI,KAAK,CAAC,WAAW,CAAK,CACpC,CACd,CAAC,CAAC,CAAC,CACF;YACE,oBAAC,UAAU;;gBACW,+BAAI,KAAK,CAAC,WAAW,CAAK,CACnC;YACb,oBAAC,cAAc,IAAC,SAAS,EAAE,KAAK;gBAC9B,oBAAC,KAAK;oBACJ,oBAAC,SAAS;wBACR,oBAAC,QAAQ;4BACP,oBAAC,SAAS,eAAiB;4BAC3B,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;4BAC7C,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;4BAC1C,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;oBACZ,oBAAC,SAAS,QACP,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACjC,oBAAC,QAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE;wBAChC,oBAAC,SAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,IACrB,MAAM,CAAC,WAAW,EAAE,CACX;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;wBACZ,oBAAC,SAAS,IAAC,KAAK,EAAC,OAAO;4BACtB,oBAAC,MAAM,IACL,OAAO,EAAE,GAAG,EAAE;oCACZ,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;oCACrC,IAAI,QAAQ,EAAE;wCACZ,WAAW,CAAC,QAAQ,CAAC,CAAA;wCACrB,MAAM,aAAa,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;wCACzC,IAAI,aAAa,EAAE;4CACjB,KAAK,CAAC,SAAS,CAAC,aAAa,CAAC,CAAA;yCAC/B;qCACF;oCACD,WAAW,EAAE,CAAA;gCACf,CAAC,EACD,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,SAGZ,CACC,CACH,CACZ,CAAC,CACQ,CACN,CACO,CAChB,CACJ,CACa;QAChB,oBAAC,OAAO,OAAG;QACX,oBAAC,aAAa;YACZ,oBAAC,MAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE,KAAK,EAAC,SAAS,aAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC"}
|
|
@@ -45,7 +45,7 @@ function getTrackName(track, session) {
|
|
|
45
45
|
const asm = session.assemblies.find(a => a.sequence === track.configuration);
|
|
46
46
|
return (trackName ||
|
|
47
47
|
(asm
|
|
48
|
-
? `Reference Sequence (${readConfObject(asm, 'name')})`
|
|
48
|
+
? `Reference Sequence (${readConfObject(asm, 'displayName') || readConfObject(asm, 'name')})`
|
|
49
49
|
: 'Reference Sequence'));
|
|
50
50
|
}
|
|
51
51
|
return trackName;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAEL,OAAO,EACP,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAElE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAIjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,SAAS,YAAY,CACnB,KAAqB,EACrB,OAAgD;IAEhD,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,IAAI,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACvD,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,aAAa,CAAC,CAAA;QAC5E,OAAO,CACL,SAAS;YACT,CAAC,GAAG;gBACF,CAAC,CAAC,
|
|
1
|
+
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"AAAA,OAAO,KAAK,MAAM,OAAO,CAAA;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,YAAY,CAAA;AAErC,OAAO,EAEL,OAAO,EACP,cAAc,GACf,MAAM,6BAA6B,CAAA;AACpC,OAAO,aAAa,MAAM,gCAAgC,CAAA;AAC1D,OAAO,EAAE,UAAU,EAAE,iBAAiB,EAAE,MAAM,oBAAoB,CAAA;AAElE,OAAO,EAAE,UAAU,EAAE,KAAK,EAAE,UAAU,EAAE,KAAK,EAAE,MAAM,eAAe,CAAA;AACpE,OAAO,EAAE,UAAU,EAAE,MAAM,eAAe,CAAA;AAE1C,OAAO,EACL,WAAW,EACX,WAAW,EACX,aAAa,GACd,MAAM,+BAA+B,CAAA;AAEtC,QAAQ;AACR,OAAO,YAAY,MAAM,8BAA8B,CAAA;AACvD,OAAO,QAAQ,MAAM,mCAAmC,CAAA;AACxD,OAAO,SAAS,MAAM,2BAA2B,CAAA;AAIjD,MAAM,SAAS,GAAG,UAAU,EAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,SAAS,YAAY,CACnB,KAAqB,EACrB,OAAgD;IAEhD,MAAM,SAAS,GAAG,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,IAAI,OAAO,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACvD,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,aAAa,CAAC,CAAA;QAC5E,OAAO,CACL,SAAS;YACT,CAAC,GAAG;gBACF,CAAC,CAAC,uBACE,cAAc,CAAC,GAAG,EAAE,aAAa,CAAC,IAAI,cAAc,CAAC,GAAG,EAAE,MAAM,CAClE,GAAG;gBACL,CAAC,CAAC,oBAAoB,CAAC,CAC1B,CAAA;KACF;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AACD,MAAM,UAAU,GAAG,KAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,iBAAiB,CAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,UAAU,CAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;IAE9C,MAAM,UAAU,GAAG,aAAa,CAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,WAAW,GAAG,CAAC,KAAuC,EAAE,EAAE;QAC9D,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;QAClC,IAAI,MAAM,CAAC,UAAU,EAAE;YACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;YAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;YAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;SAClC;IACH,CAAC,CAAA;IAED,MAAM,KAAK,GAAG;QACZ,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,oBAAC,KAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,8BACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,oBAAC,QAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,oBAAC,UAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,oBAAC,SAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QACb,oBAAC,UAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,CACC;QACb,oBAAC,UAAU,OACL,WAAW,CAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,oBAAC,YAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,oBAAC,aAAa,OACR,WAAW,CAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,eAAe,QAAQ,CAAC,UAAU,CAAC,CAAA"}
|
|
@@ -14,4 +14,16 @@ export async function fetchResults({ queryString, searchType, searchScope, rankS
|
|
|
14
14
|
const refNameResults = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _a === void 0 ? void 0 : _a.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase())).slice(0, 10).map(r => new BaseResult({ label: r }));
|
|
15
15
|
return dedupe([...(refNameResults || []), ...(textSearchResults || [])], elt => elt.getId());
|
|
16
16
|
}
|
|
17
|
+
// splits on the last instance of a character
|
|
18
|
+
export function splitLast(str, split) {
|
|
19
|
+
const lastIndex = str.lastIndexOf(split);
|
|
20
|
+
if (lastIndex === -1) {
|
|
21
|
+
return [str, ''];
|
|
22
|
+
}
|
|
23
|
+
else {
|
|
24
|
+
const before = str.slice(0, lastIndex);
|
|
25
|
+
const after = str.slice(lastIndex + 1);
|
|
26
|
+
return [before, after];
|
|
27
|
+
}
|
|
28
|
+
}
|
|
17
29
|
//# sourceMappingURL=util.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/util.ts"],"names":[],"mappings":"AAEA,OAAO,UAAU,MAAM,sCAAsC,CAAA;AAI7D,MAAM,UAAU,MAAM,CACpB,UAAwB,EAAE,EAC1B,EAAkC;IAElC,OAAO,OAAO,CAAC,MAAM,CACnB,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CACnE,CAAA;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,EACjC,WAAW,EACX,UAAU,EACV,WAAW,EACX,iBAAiB,EACjB,iBAAiB,EACjB,QAAQ,GAQT;;IACC,IAAI,CAAC,iBAAiB,EAAE;QACtB,OAAO,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;KACvC;IAED,MAAM,iBAAiB,GAAG,MAAM,CAAA,iBAAiB,aAAjB,iBAAiB,uBAAjB,iBAAiB,CAAE,MAAM,CACvD;QACE,WAAW;QACX,UAAU;KACX,EACD,WAAW,EACX,iBAAiB,CAClB,CAAA,CAAA;IAED,MAAM,cAAc,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,0CACxC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,EACtE,KAAK,CAAC,CAAC,EAAE,EAAE,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,UAAU,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAEzC,OAAO,MAAM,CACX,CAAC,GAAG,CAAC,cAAc,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,iBAAiB,IAAI,EAAE,CAAC,CAAC,EACzD,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,EAAE,CACnB,CAAA;AACH,CAAC"}
|
|
1
|
+
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/util.ts"],"names":[],"mappings":"AAEA,OAAO,UAAU,MAAM,sCAAsC,CAAA;AAI7D,MAAM,UAAU,MAAM,CACpB,UAAwB,EAAE,EAC1B,EAAkC;IAElC,OAAO,OAAO,CAAC,MAAM,CACnB,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CACnE,CAAA;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,YAAY,CAAC,EACjC,WAAW,EACX,UAAU,EACV,WAAW,EACX,iBAAiB,EACjB,iBAAiB,EACjB,QAAQ,GAQT;;IACC,IAAI,CAAC,iBAAiB,EAAE;QACtB,OAAO,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;KACvC;IAED,MAAM,iBAAiB,GAAG,MAAM,CAAA,iBAAiB,aAAjB,iBAAiB,uBAAjB,iBAAiB,CAAE,MAAM,CACvD;QACE,WAAW;QACX,UAAU;KACX,EACD,WAAW,EACX,iBAAiB,CAClB,CAAA,CAAA;IAED,MAAM,cAAc,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,0CACxC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,EACtE,KAAK,CAAC,CAAC,EAAE,EAAE,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,UAAU,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAEzC,OAAO,MAAM,CACX,CAAC,GAAG,CAAC,cAAc,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,iBAAiB,IAAI,EAAE,CAAC,CAAC,EACzD,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,EAAE,CACnB,CAAA;AACH,CAAC;AAED,6CAA6C;AAC7C,MAAM,UAAU,SAAS,CAAC,GAAW,EAAE,KAAa;IAClD,MAAM,SAAS,GAAG,GAAG,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;IACxC,IAAI,SAAS,KAAK,CAAC,CAAC,EAAE;QACpB,OAAO,CAAC,GAAG,EAAE,EAAE,CAAC,CAAA;KACjB;SAAM;QACL,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAA;QACtC,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QACtC,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;KACvB;AACH,CAAC"}
|
|
@@ -57,7 +57,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
|
|
|
57
57
|
hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
58
58
|
hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
59
59
|
hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
60
|
-
trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<
|
|
60
|
+
trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
61
61
|
trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
62
62
|
showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
63
63
|
showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@jbrowse/plugin-linear-genome-view",
|
|
3
|
-
"version": "2.1.
|
|
3
|
+
"version": "2.1.4",
|
|
4
4
|
"description": "JBrowse 2 linear genome view",
|
|
5
5
|
"keywords": [
|
|
6
6
|
"jbrowse",
|
|
@@ -64,5 +64,5 @@
|
|
|
64
64
|
"access": "public"
|
|
65
65
|
},
|
|
66
66
|
"module": "esm/index.js",
|
|
67
|
-
"gitHead": "
|
|
67
|
+
"gitHead": "8f53e016dd83b01a1beea0fc61c33964f5b6c809"
|
|
68
68
|
}
|