@jbrowse/plugin-linear-genome-view 2.1.2 → 2.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/LinearGenomeView/components/ImportForm.js +37 -41
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +2 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +14 -8
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +26 -6
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchBox.js +36 -32
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +7 -4
- package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/util.d.ts +1 -0
- package/dist/LinearGenomeView/components/util.js +14 -1
- package/dist/LinearGenomeView/components/util.js.map +1 -1
- package/dist/LinearGenomeView/index.d.ts +1 -1
- package/esm/LinearGenomeView/components/ImportForm.js +38 -42
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +2 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +14 -8
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +26 -6
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js +37 -33
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.js +7 -4
- package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/esm/LinearGenomeView/components/util.d.ts +1 -0
- package/esm/LinearGenomeView/components/util.js +12 -0
- package/esm/LinearGenomeView/components/util.js.map +1 -1
- package/esm/LinearGenomeView/index.d.ts +1 -1
- package/package.json +2 -2
- package/src/LinearGenomeView/components/ImportForm.tsx +39 -42
- package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +4 -4
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +27 -8
- package/src/LinearGenomeView/components/SearchBox.tsx +38 -35
- package/src/LinearGenomeView/components/SearchResultsDialog.tsx +7 -4
- package/src/LinearGenomeView/components/TrackLabel.tsx +3 -1
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +2 -2
- package/src/LinearGenomeView/components/util.ts +12 -0
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@@ -32,7 +32,6 @@ const mobx_react_1 = require("mobx-react");
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const util_1 = require("@jbrowse/core/util");
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const material_1 = require("@mui/material");
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const ui_1 = require("@jbrowse/core/ui");
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const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
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const Close_1 = __importDefault(require("@mui/icons-material/Close"));
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// locals
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const RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
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@@ -58,6 +57,7 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
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const { rankSearchResults, isSearchDialogDisplayed, error } = model;
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const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyNames[0]);
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const [importError, setImportError] = (0, react_1.useState)(error);
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const [option, setOption] = (0, react_1.useState)();
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const searchScope = model.searchScope(selectedAsm);
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const assembly = assemblyManager.get(selectedAsm);
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const assemblyError = assemblyNames.length
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@@ -67,55 +67,51 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
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const err = assemblyError || importError;
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const [myVal, setValue] = (0, react_1.useState)('');
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const value = myVal || ((_a = regions[0]) === null || _a === void 0 ? void 0 : _a.refName);
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function navToOption(option) {
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const location = option.getLocation();
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const trackId = option.getTrackId();
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if (location) {
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model.navToLocString(location, selectedAsm);
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if (trackId) {
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model.showTrack(trackId);
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}
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}
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}
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// gets a string as input, or use stored option results from previous query,
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// then re-query and
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// 1) if it has multiple results: pop a dialog
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// 2) if it's a single result navigate to it
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// 3) else assume it's a locstring and navigate to it
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async function handleSelectedRegion(input) {
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if (!option) {
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return;
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}
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let trackId = option.getTrackId();
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let location = input || option.getLocation() || '';
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const [ref, rest] = location.split(':');
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const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
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try {
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// - or looks like locstring
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// then just navigate as if it were a locstring
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if (allRefs.includes(location) ||
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(allRefs.includes(ref) &&
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rest !== undefined &&
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!Number.isNaN(parseInt(rest, 10)))) {
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model.navToLocString(location, selectedAsm);
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if ((option === null || option === void 0 ? void 0 : option.getDisplayString()) === input && option.hasLocation()) {
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navToOption(option);
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}
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else {
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const
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textSearchManager,
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assembly,
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});
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if (results.length > 1) {
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model.setSearchResults(results, input.toLowerCase());
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return;
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const [ref, rest] = (0, util_2.splitLast)(input, ':');
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const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
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if (allRefs.includes(input) ||
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(allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
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model.navToLocString(input, selectedAsm);
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}
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else
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else {
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const results = await (0, util_2.fetchResults)({
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queryString: input,
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searchType: 'exact',
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searchScope,
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rankSearchResults,
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textSearchManager,
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assembly,
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});
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if (results.length > 1) {
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model.setSearchResults(results, input.toLowerCase());
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}
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else if (results.length === 1) {
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navToOption(results[0]);
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}
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else {
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model.navToLocString(input, selectedAsm);
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}
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}
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}
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}
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@@ -152,7 +148,7 @@ const ImportForm = (0, mobx_react_1.observer)(({ model }) => {
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searchScope,
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}), model: model, assemblyName: assemblyError ? undefined : selectedAsm, value: value,
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// note: minWidth 270 accomodates full width of helperText
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minWidth: 270, onChange: str => setValue(str), TextFieldProps: {
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minWidth: 270, onChange: str => setValue(str), onSelect: val => setOption(val), TextFieldProps: {
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variant: 'outlined',
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helperText: 'Enter sequence name, feature name, or location',
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style: { minWidth: '175px' },
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@@ -1 +1 @@
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1
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-
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1
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@@ -102,7 +102,8 @@ function SVGTracks({ displayResults, model, offset, }) {
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return (react_1.default.createElement(react_1.default.Fragment, null, displayResults.map(({ track, result }) => {
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const current = offset;
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const trackName = (0, configuration_1.getConf)(track, 'name') ||
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-
`Reference sequence (${(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(track.configuration), '
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`Reference sequence (${(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(track.configuration), 'displayName') ||
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(0, configuration_1.readConfObject)((0, mobx_state_tree_1.getParent)(track.configuration), 'name')})`;
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const display = track.displays[0];
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offset += display.height + paddingHeight + textHeight;
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return (react_1.default.createElement("g", { key: track.configuration.trackId, transform: `translate(0 ${current})` },
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@@ -1 +1 @@
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1
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-
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|
|
1
|
+
{"version":3,"file":"LinearGenomeViewSvg.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/LinearGenomeViewSvg.tsx"],"names":[],"mappings":";;;;;;AAAA,kDAAyB;AACzB,6CAAuD;AACvD,+BAA2B;AAC3B,qDAA2C;AAC3C,+DAAqE;AACrE,6CAAgE;AAEhE,yFAA2D;AAE3D,SAAS;AACT,oDAA2B;AAC3B,0BAIW;AACX,yDAAuD;AAIvD,SAAS,QAAQ,CAAC,EAAE,KAAK,EAAE,QAAQ,EAAoC;IACrE,MAAM,EACJ,QAAQ,EACR,aAAa,EAAE,EAAE,0BAA0B,EAAE,YAAY,EAAE,OAAO,EAAE,GACrE,GAAG,KAAK,CAAA;IACT,MAAM,SAAS,GAAG,IAAA,sBAAe,EAAC,OAAO,CAAC,CAAA;IAC1C,MAAM,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,QAAQ,EAAE,CAAC,CAAC,CAAA;IACjC,MAAM,EAAE,GAAG,EAAE,GAAG,YAAY,CAAA;IAC5B,OAAO,CACL;QACE,wCAAM,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,MAAM,EAAC,OAAO,GAAG;QACvD,wCAAM,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,MAAM,EAAC,OAAO,GAAG;QACtD,wCAAM,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,MAAM,EAAC,OAAO,GAAG;QACtD,wCACE,CAAC,EAAE,EAAE,GAAG,CAAC,EAAE,GAAG,EAAE,CAAC,GAAG,CAAC,EACrB,CAAC,EAAE,QAAQ,GAAG,CAAC,EACf,UAAU,EAAC,QAAQ,EACnB,QAAQ,EAAE,QAAQ,IAEjB,SAAS,CACL,CACN,CACJ,CAAA;AACH,CAAC;AAED,SAAS,QAAQ,CAAC,EAChB,KAAK,EACL,QAAQ,EACR,KAAK,GAKN;IACC,MAAM,EACJ,aAAa,EAAE,EAAE,aAAa,EAAE,EAChC,QAAQ,EAAE,YAAY,EACtB,OAAO,GACR,GAAG,KAAK,CAAA;IACT,MAAM,WAAW,GAAG,aAAa,CAAC,MAAM,GAAG,CAAC,CAAA;IAC5C,OAAO,CACL;QACE;YACE,4CAAU,EAAE,EAAC,YAAY;gBACvB,wCAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,EAAE,GAAI,CACrC,CACN;QACN,aAAa,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE;YACzB,MAAM,EAAE,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,GAAG,KAAK,CAAA;YAC9D,MAAM,UAAU,GAAG,QAAQ,GAAG,YAAY,CAAA;YAC1C,OAAO,CACL,qCAAG,GAAG,EAAE,GAAG,GAAG,EAAE,EAAE,SAAS,EAAE,aAAa,UAAU,KAAK;gBACvD,wCAAM,CAAC,EAAE,UAAU,GAAG,OAAO,EAAE,CAAC,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,IAC3D,OAAO,CACH;gBACN,WAAW,CAAC,CAAC,CAAC,CACb,qCAAG,SAAS,EAAC,iBAAiB,EAAC,QAAQ,EAAC,kBAAkB;oBACxD,8BAAC,eAAK,IACJ,KAAK,EAAE,KAAK,EACZ,GAAG,EAAE,GAAG,EACR,OAAO,EAAE,OAAO,EAChB,QAAQ,EAAE,QAAQ,GAClB,CACA,CACL,CAAC,CAAC,CAAC,CACF,wCACE,WAAW,EAAE,CAAC,EACd,MAAM,EAAC,OAAO,EACd,EAAE,EAAE,KAAK,GAAG,OAAO,EACnB,EAAE,EAAE,GAAG,GAAG,OAAO,EACjB,EAAE,EAAE,EAAE,EACN,EAAE,EAAE,EAAE,GACN,CACH,CACC,CACL,CAAA;QACH,CAAC,CAAC,CACD,CACJ,CAAA;AACH,CAAC;AAED,MAAM,QAAQ,GAAG,EAAE,CAAA;AACnB,MAAM,WAAW,GAAG,EAAE,CAAA;AACtB,MAAM,UAAU,GAAG,QAAQ,GAAG,CAAC,CAAA;AAC/B,MAAM,aAAa,GAAG,EAAE,CAAA;AACxB,MAAM,YAAY,GAAG,UAAU,GAAG,EAAE,CAAA;AACpC,MAAM,sBAAsB,GAAG,GAAG,CAAA;AASlC,MAAM,WAAW,GAAG,CAAC,MAAe,EAAE,EAAE;IACtC,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,EAAE;QACpC,MAAM,OAAO,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAA;QACjC,OAAO,KAAK,GAAG,OAAO,CAAC,MAAM,GAAG,aAAa,GAAG,UAAU,CAAA;IAC5D,CAAC,EAAE,CAAC,CAAC,CAAA;AACP,CAAC,CAAA;AAED,yCAAyC;AACzC,MAAM,SAAS,GAAG,CAAC,EAAE,KAAK,EAAkB,EAAE,EAAE;IAC9C,MAAM,EAAE,KAAK,EAAE,aAAa,EAAE,aAAa,EAAE,gBAAgB,EAAE,GAAG,KAAK,CAAA;IACvE,MAAM,EAAE,eAAe,EAAE,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAC7C,MAAM,YAAY,GAAG,aAAa,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IACrE,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAElD,MAAM,QAAQ,GAAG,yBAAU,CAAC,MAAM,CAAC;QACjC,gBAAgB,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,gBAAgB,CAAC,CAAC;QAC9D,uBAAuB,EAAE,CAAC;QAC1B,iBAAiB,EAAE,KAAK,CAAC,iBAAiB;KAC3C,CAAC,CAAA;IACF,MAAM,cAAc,GAAG,KAAK,CAAC,aAAa,CAAC,aAAa,CAAA;IAExD,QAAQ,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAA;IAChC,QAAQ,CAAC,cAAc,EAAE,CAAA;IACzB,MAAM,KAAK,GAAG,QAAQ,CAAC,aAAa,CAAC,aAAa,CAAC,CAAC,CAAC,CAAA;IAErD,MAAM,KAAK,GAAG,cAAc,CAAC,CAAC,CAAC,CAAA;IAC/B,MAAM,eAAe,GACnB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,KAAK;QACR,KAAK,EAAE,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,KAAK,CAAC,KAAK;KAChD,CAAC,IAAI,CAAC,CAAA;IAET,MAAM,IAAI,GAAG,cAAc,CAAC,cAAc,CAAC,MAAM,GAAG,CAAC,CAAC,CAAA;IACtD,MAAM,cAAc,GAClB,QAAQ,CAAC,MAAM,CAAC;QACd,GAAG,IAAI;QACP,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG;KAC7C,CAAC,IAAI,CAAC,CAAA;IAET,MAAM,cAAc,GAAG,aAAa,CAAC,CAAC,CAAC,sBAAsB,CAAC,CAAC,CAAC,CAAC,CAAA;IAEjE,OAAO,CACL,qCAAG,EAAE,EAAC,QAAQ;QACZ,wCAAM,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,IACxC,YAAY,CACR;QAEN,aAAa,CAAC,CAAC,CAAC,CACf,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG;YACzC,8BAAC,4BAAS,IAAC,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,GAAI;YACnE,wCACE,MAAM,EAAC,KAAK,EACZ,IAAI,EAAC,kBAAkB,EACvB,KAAK,EAAE,IAAI,CAAC,GAAG,CAAC,cAAc,GAAG,eAAe,EAAE,GAAG,CAAC,EACtD,MAAM,EAAE,0BAAsB,GAAG,CAAC,EAClC,CAAC,EAAE,eAAe,EAClB,CAAC,EAAE,GAAG,GACN;YACF,qCAAG,SAAS,EAAE,eAAe,0BAAsB,GAAG;gBACpD,8BAAC,0BAAO,IAAC,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,KAAK,GAAI,CAC7D,CACF,CACL,CAAC,CAAC,CAAC,IAAI;QAER,qCAAG,SAAS,EAAE,eAAe,QAAQ,GAAG,cAAc,GAAG;YACvD,8BAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,GAAI,CAC5C;QACJ,qCAAG,SAAS,EAAE,eAAe,WAAW,GAAG,cAAc,GAAG;YAC1D,8BAAC,QAAQ,IAAC,KAAK,EAAE,KAAK,EAAE,QAAQ,EAAE,QAAQ,EAAE,KAAK,EAAE,KAAK,GAAI,CAC1D,CACF,CACL,CAAA;AACH,CAAC,CAAA;AAED,kCAAkC;AAClC,MAAM,mBAAmB,GAAG,CAAC,EAC3B,KAAK,EACL,MAAM,GAIP,EAAE,EAAE;IACH,MAAM,EAAE,aAAa,EAAE,QAAQ,EAAE,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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>) | undefined;
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block: ContentBlock;
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@@ -34,7 +34,6 @@ const material_1 = require("@mui/material");
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const util_2 = require("./util");
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const HelpDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./HelpDialog'))));
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// the logic of this method is to only apply a filter to RefSequenceResults
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@@ -57,8 +56,8 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
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const [inputValue, setInputValue] = (0, react_1.useState)('');
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const [searchOptions, setSearchOptions] = (0, react_1.useState)();
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const debouncedSearch = (0, util_1.useDebounce)(currentSearch, 300);
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const { coarseVisibleLocStrings, hasDisplayedRegions } = model;
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const { coarseVisibleLocStrings, hasDisplayedRegions } = model;
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// eslint-disable-next-line react-hooks/exhaustive-deps
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const regions = (assembly === null || assembly === void 0 ? void 0 : assembly.regions) || [];
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const options = (0, react_1.useMemo)(() => regions.map(option => ({
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@@ -78,9 +77,30 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
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setLoaded(false);
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const results = await fetchResults(debouncedSearch);
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if (active) {
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const m = {};
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for (let i = 0; i < results.length; i++) {
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const r = results[i];
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const d = r.getDisplayString();
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if (!m[d]) {
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m[d] = [];
|
|
86
|
+
}
|
|
87
|
+
m[d].push(r);
|
|
88
|
+
}
|
|
89
|
+
const display = Object.entries(m).map(([displayString, results]) => {
|
|
90
|
+
if (results.length === 1) {
|
|
91
|
+
return { result: results[0] };
|
|
92
|
+
}
|
|
93
|
+
else {
|
|
94
|
+
return {
|
|
95
|
+
result: new BaseResults_1.default({
|
|
96
|
+
displayString,
|
|
97
|
+
results,
|
|
98
|
+
label: displayString,
|
|
99
|
+
}),
|
|
100
|
+
};
|
|
101
|
+
}
|
|
102
|
+
});
|
|
103
|
+
setSearchOptions(display);
|
|
84
104
|
setLoaded(true);
|
|
85
105
|
}
|
|
86
106
|
}
|
|
@@ -102,7 +122,7 @@ function RefNameAutocomplete({ model, onSelect, assemblyName, style, fetchResult
|
|
|
102
122
|
// notes on implementation:
|
|
103
123
|
// The selectOnFocus setting helps highlight the field when clicked
|
|
104
124
|
return (react_1.default.createElement(react_1.default.Fragment, null,
|
|
105
|
-
react_1.default.createElement(material_1.Autocomplete, { id: `refNameAutocomplete-${model.id}`, "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (
|
|
125
|
+
react_1.default.createElement(material_1.Autocomplete, { id: `refNameAutocomplete-${model.id}`, "data-testid": "autocomplete", disableListWrap: true, disableClearable: true, disabled: !assemblyName, freeSolo: true, includeInputInList: true, selectOnFocus: true, style: { ...style, width }, value: inputBoxVal, loading: !loaded, inputValue: inputValue, onInputChange: (_event, newInputValue) => {
|
|
106
126
|
setInputValue(newInputValue);
|
|
107
127
|
onChange === null || onChange === void 0 ? void 0 : onChange(newInputValue);
|
|
108
128
|
}, loadingText: "loading results", open: open, onOpen: () => setOpen(true), onClose: () => {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"RefNameAutocomplete.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RefNameAutocomplete.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA2E;AAC3E,2CAAqC;AACrC,6CAAyE;AACzE,oFAE6C;AAC7C,4CAOsB;AAEtB,QAAQ;AACR,wEAAmD;AACnD,oEAA+C;
|
|
1
|
+
{"version":3,"file":"RefNameAutocomplete.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/RefNameAutocomplete.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA2E;AAC3E,2CAAqC;AACrC,6CAAyE;AACzE,oFAE6C;AAC7C,4CAOsB;AAEtB,QAAQ;AACR,wEAAmD;AACnD,oEAA+C;AAK/C,OAAO;AACP,MAAM,UAAU,GAAG,IAAA,YAAI,EAAC,GAAG,EAAE,mDAAQ,cAAc,GAAC,CAAC,CAAA;AAOrD,2EAA2E;AAC3E,4EAA4E;AAC5E,oCAAoC;AACpC,SAAS,aAAa,CAAC,OAAiB,EAAE,WAAmB;IAC3D,OAAO,OAAO,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE;QAC7B,MAAM,EAAE,MAAM,EAAE,GAAG,MAAM,CAAA;QACzB,OAAO,CACL,MAAM,CAAC,QAAQ,EAAE,CAAC,WAAW,EAAE,CAAC,QAAQ,CAAC,WAAW,CAAC;YACrD,MAAM,CAAC,aAAa,CACrB,CAAA;IACH,CAAC,CAAC,CAAA;AACJ,CAAC;AAED,SAAS,mBAAmB,CAAC,EAC3B,KAAK,EACL,QAAQ,EACR,YAAY,EACZ,KAAK,EACL,YAAY,EACZ,QAAQ,EACR,KAAK,EACL,QAAQ,GAAG,IAAI,EACf,QAAQ,GAAG,GAAG,EACd,cAAc,GAAG,EAAE,GAYpB;IACC,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,MAAM,CAAC,IAAI,EAAE,OAAO,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvC,MAAM,CAAC,MAAM,EAAE,SAAS,CAAC,GAAG,IAAA,gBAAQ,EAAC,IAAI,CAAC,CAAA;IAC1C,MAAM,CAAC,qBAAqB,EAAE,sBAAsB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IACvE,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IACtD,MAAM,CAAC,UAAU,EAAE,aAAa,CAAC,GAAG,IAAA,gBAAQ,EAAC,EAAE,CAAC,CAAA;IAChD,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,GAAY,CAAA;IAC9D,MAAM,eAAe,GAAG,IAAA,kBAAW,EAAC,aAAa,EAAE,GAAG,CAAC,CAAA;IACvD,MAAM,QAAQ,GAAG,YAAY,CAAC,CAAC,CAAC,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC,CAAC,CAAC,SAAS,CAAA;IAC7E,MAAM,EAAE,uBAAuB,EAAE,mBAAmB,EAAE,GAAG,KAAK,CAAA;IAE9D,uDAAuD;IACvD,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,OAAO,KAAI,EAAE,CAAA;IAEvC,MAAM,OAAO,GAAG,IAAA,eAAO,EACrB,GAAG,EAAE,CACH,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC;QACrB,MAAM,EAAE,IAAI,+BAAiB,CAAC;YAC5B,OAAO,EAAE,MAAM,CAAC,OAAO;YACvB,KAAK,EAAE,MAAM,CAAC,OAAO;YACrB,gBAAgB,EAAE,SAAS;SAC5B,CAAC;KACH,CAAC,CAAC,EACL,CAAC,OAAO,CAAC,CACV,CAAA;IAED,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,MAAM,GAAG,IAAI,CAEhB;QAAA,CAAC,KAAK,IAAI,EAAE;YACX,IAAI;gBACF,IAAI,eAAe,KAAK,EAAE,IAAI,CAAC,YAAY,EAAE;oBAC3C,OAAM;iBACP;gBAED,SAAS,CAAC,KAAK,CAAC,CAAA;gBAChB,MAAM,OAAO,GAAG,MAAM,YAAY,CAAC,eAAe,CAAC,CAAA;gBACnD,IAAI,MAAM,EAAE;oBACV,MAAM,CAAC,GAAoC,EAAE,CAAA;oBAE7C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;wBACvC,MAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAA;wBACpB,MAAM,CAAC,GAAG,CAAC,CAAC,gBAAgB,EAAE,CAAA;wBAC9B,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE;4BACT,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAA;yBACV;wBACD,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;qBACb;oBACD,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,aAAa,EAAE,OAAO,CAAC,EAAE,EAAE;wBACjE,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;4BACxB,OAAO,EAAE,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC,EAAE,CAAA;yBAC9B;6BAAM;4BACL,OAAO;gCACL,MAAM,EAAE,IAAI,qBAAU,CAAC;oCACrB,aAAa;oCACb,OAAO;oCACP,KAAK,EAAE,aAAa;iCACrB,CAAC;6BACH,CAAA;yBACF;oBACH,CAAC,CAAC,CAAA;oBAEF,gBAAgB,CAAC,OAAO,CAAC,CAAA;oBACzB,SAAS,CAAC,IAAI,CAAC,CAAA;iBAChB;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;gBAChB,IAAI,MAAM,EAAE;oBACV,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,CAAC,CAAA;iBAChC;aACF;QACH,CAAC,CAAC,EAAE,CAAA;QAEJ,OAAO,GAAG,EAAE;YACV,MAAM,GAAG,KAAK,CAAA;QAChB,CAAC,CAAA;IACH,CAAC,EAAE,CAAC,YAAY,EAAE,YAAY,EAAE,eAAe,EAAE,OAAO,EAAE,KAAK,CAAC,CAAC,CAAA;IAEjE,MAAM,WAAW,GAAG,uBAAuB,IAAI,KAAK,IAAI,EAAE,CAAA;IAE1D,qCAAqC;IACrC,6CAA6C;IAC7C,MAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CACpB,IAAI,CAAC,GAAG,CAAC,IAAA,kBAAW,EAAC,WAAW,EAAE,EAAE,CAAC,GAAG,EAAE,EAAE,QAAQ,CAAC,EACrD,GAAG,CACJ,CAAA;IAED,2BAA2B;IAC3B,mEAAmE;IACnE,OAAO,CACL;QACE,8BAAC,uBAAY,IACX,EAAE,EAAE,uBAAuB,KAAK,CAAC,EAAE,EAAE,iBACzB,cAAc,EAC1B,eAAe,QACf,gBAAgB,QAChB,QAAQ,EAAE,CAAC,YAAY,EACvB,QAAQ,QACR,kBAAkB,QAClB,aAAa,QACb,KAAK,EAAE,EAAE,GAAG,KAAK,EAAE,KAAK,EAAE,EAC1B,KAAK,EAAE,WAAW,EAClB,OAAO,EAAE,CAAC,MAAM,EAChB,UAAU,EAAE,UAAU,EACtB,aAAa,EAAE,CAAC,MAAM,EAAE,aAAa,EAAE,EAAE;gBACvC,aAAa,CAAC,aAAa,CAAC,CAAA;gBAC5B,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,aAAa,CAAC,CAAA;YAC3B,CAAC,EACD,WAAW,EAAC,iBAAiB,EAC7B,IAAI,EAAE,IAAI,EACV,MAAM,EAAE,GAAG,EAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EAC3B,OAAO,EAAE,GAAG,EAAE;gBACZ,OAAO,CAAC,KAAK,CAAC,CAAA;gBACd,SAAS,CAAC,IAAI,CAAC,CAAA;gBACf,IAAI,mBAAmB,EAAE;oBACvB,gBAAgB,CAAC,EAAE,CAAC,CAAA;oBACpB,gBAAgB,CAAC,SAAS,CAAC,CAAA;iBAC5B;YACH,CAAC,EACD,QAAQ,EAAE,CAAC,MAAM,EAAE,cAAc,EAAE,EAAE;gBACnC,IAAI,CAAC,cAAc,IAAI,CAAC,YAAY,EAAE;oBACpC,OAAM;iBACP;gBAED,IAAI,OAAO,cAAc,KAAK,QAAQ,EAAE;oBACtC,0CAA0C;oBAC1C,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,IAAI,qBAAU,CAAC,EAAE,KAAK,EAAE,cAAc,EAAE,CAAC,CAAC,CAAA;iBACtD;qBAAM;oBACL,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAG,cAAc,CAAC,MAAM,CAAC,CAAA;iBAClC;gBACD,aAAa,CAAC,WAAW,CAAC,CAAA;YAC5B,CAAC,EACD,OAAO,EAAE,CAAC,CAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,aAAa,EACzD,iBAAiB,EAAE,MAAM,CAAC,EAAE,CAAC,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,KAAK,MAAK,aAAa,EAC5D,aAAa,EAAE,CAAC,OAAO,EAAE,MAAM,EAAE,EAAE;gBACjC,MAAM,QAAQ,GAAG,aAAa,CAC5B,OAAO,EACP,MAAM,CAAC,UAAU,CAAC,iBAAiB,EAAE,CACtC,CAAA;gBACD,OAAO;oBACL,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC,EAAE,GAAG,CAAC;oBACzB,GAAG,CAAC,QAAQ,CAAC,MAAM,GAAG,GAAG;wBACvB,CAAC,CAAC;4BACE;gCACE,KAAK,EAAE,aAAa;gCACpB,MAAM,EAAE,IAAI,qBAAU,CAAC;oCACrB,KAAK,EAAE,8BAA8B;iCACtC,CAAC;6BACH;yBACF;wBACH,CAAC,CAAC,EAAE,CAAC;iBACR,CAAA;YACH,CAAC,EACD,WAAW,EAAE,MAAM,CAAC,EAAE;gBACpB,MAAM,EAAE,UAAU,EAAE,UAAU,GAAG,EAAE,EAAE,GAAG,cAAc,CAAA;gBACtD,OAAO,CACL,8BAAC,oBAAS,IACR,MAAM,EAAE,GAAG,EAAE;oBACX,gEAAgE;oBAChE,yBAAyB;oBACzB,aAAa,CAAC,WAAW,CAAC,KAExB,MAAM,KACN,cAAc,EAClB,UAAU,EAAE,UAAU,EACtB,UAAU,EAAE;wBACV,GAAG,MAAM,CAAC,UAAU;wBACpB,GAAG,UAAU;wBAEb,YAAY,EAAE,CACZ;4BACG,OAAO,CAAC,MAAM,KAAK,CAAC,CAAC,CAAC,CAAC,CACtB,8BAAC,2BAAgB,IAAC,KAAK,EAAC,SAAS,EAAC,IAAI,EAAE,EAAE,GAAI,CAC/C,CAAC,CAAC,CAAC,CACF,8BAAC,yBAAc,IAAC,QAAQ,EAAC,KAAK,EAAC,KAAK,EAAE,EAAE,WAAW,EAAE,CAAC,EAAE;gCACtD,8BAAC,gBAAU,IAAC,QAAQ,EAAC,OAAO,GAAG;gCAC9B,QAAQ,CAAC,CAAC,CAAC,CACV,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,sBAAsB,CAAC,IAAI,CAAC,EAC3C,IAAI,EAAC,OAAO;oCAEZ,8BAAC,cAAQ,IAAC,QAAQ,EAAC,OAAO,GAAG,CAClB,CACd,CAAC,CAAC,CAAC,IAAI,CACO,CAClB;4BACA,MAAM,CAAC,UAAU,CAAC,YAAY,CAC9B,CACJ;qBACF,EACD,WAAW,EAAC,qBAAqB,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,CAAC,gBAAgB,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,GAC/C,CACH,CAAA;YACH,CAAC,EACD,cAAc,EAAE,MAAM,CAAC,EAAE,CACvB,CAAC,OAAO,MAAM,KAAK,QAAQ;gBACzB,CAAC,CAAC,MAAM;gBACR,CAAC,CAAC,MAAM,CAAC,MAAM,CAAC,gBAAgB,EAAE,CAAC,IAAI,EAAE,GAE7C;QACD,qBAAqB,CAAC,CAAC,CAAC,CACvB,8BAAC,gBAAQ,IAAC,QAAQ,EAAE,0CAAO;YACzB,8BAAC,UAAU,IAAC,WAAW,EAAE,GAAG,EAAE,CAAC,sBAAsB,CAAC,KAAK,CAAC,GAAI,CACvD,CACZ,CAAC,CAAC,CAAC,IAAI,CACP,CACJ,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,mBAAmB,CAAC,CAAA"}
|
|
@@ -26,48 +26,52 @@ function SearchBox({ model, showHelp, }) {
|
|
|
26
26
|
const assemblyName = assemblyNames[0];
|
|
27
27
|
const assembly = assemblyManager.get(assemblyName);
|
|
28
28
|
const searchScope = model.searchScope(assemblyName);
|
|
29
|
+
function navToOption(option) {
|
|
30
|
+
const location = option.getLocation();
|
|
31
|
+
const trackId = option.getTrackId();
|
|
32
|
+
if (location) {
|
|
33
|
+
model.navToLocString(location, assemblyName);
|
|
34
|
+
if (trackId) {
|
|
35
|
+
model.showTrack(trackId);
|
|
36
|
+
}
|
|
37
|
+
}
|
|
38
|
+
}
|
|
29
39
|
// gets a string as input, or use stored option results from previous query,
|
|
30
40
|
// then re-query and
|
|
31
41
|
// 1) if it has multiple results: pop a dialog
|
|
32
42
|
// 2) if it's a single result navigate to it
|
|
33
43
|
// 3) else assume it's a locstring and navigate to it
|
|
34
44
|
async function handleSelectedRegion(option) {
|
|
35
|
-
let trackId = option.getTrackId();
|
|
36
|
-
let location = option.getLocation();
|
|
37
|
-
const label = option.getLabel();
|
|
38
|
-
const [ref, rest] = location.split(':');
|
|
39
|
-
const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
|
|
40
45
|
try {
|
|
41
|
-
|
|
42
|
-
|
|
43
|
-
// - or looks like locString
|
|
44
|
-
// then just navigate as if it were a locString
|
|
45
|
-
if (allRefs.includes(location) ||
|
|
46
|
-
(allRefs.includes(ref) &&
|
|
47
|
-
rest !== undefined &&
|
|
48
|
-
!Number.isNaN(parseInt(rest, 10)))) {
|
|
49
|
-
model.navToLocString(location, assemblyName);
|
|
46
|
+
if (option.hasLocation()) {
|
|
47
|
+
navToOption(option);
|
|
50
48
|
}
|
|
51
49
|
else {
|
|
52
|
-
const
|
|
53
|
-
|
|
54
|
-
|
|
55
|
-
|
|
56
|
-
|
|
57
|
-
|
|
58
|
-
assembly,
|
|
59
|
-
});
|
|
60
|
-
if (results.length > 1) {
|
|
61
|
-
model.setSearchResults(results, label.toLowerCase());
|
|
62
|
-
return;
|
|
63
|
-
}
|
|
64
|
-
else if (results.length === 1) {
|
|
65
|
-
location = results[0].getLocation();
|
|
66
|
-
trackId = results[0].getTrackId();
|
|
50
|
+
const input = option.getLabel();
|
|
51
|
+
const [ref, rest] = (0, util_2.splitLast)(input, ':');
|
|
52
|
+
const allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNamesWithLowerCase) || [];
|
|
53
|
+
if (allRefs.includes(input) ||
|
|
54
|
+
(allRefs.includes(ref) && !Number.isNaN(parseInt(rest, 10)))) {
|
|
55
|
+
model.navToLocString(input, assemblyName);
|
|
67
56
|
}
|
|
68
|
-
|
|
69
|
-
|
|
70
|
-
|
|
57
|
+
else {
|
|
58
|
+
const results = await (0, util_2.fetchResults)({
|
|
59
|
+
queryString: input,
|
|
60
|
+
searchType: 'exact',
|
|
61
|
+
searchScope,
|
|
62
|
+
rankSearchResults,
|
|
63
|
+
textSearchManager,
|
|
64
|
+
assembly,
|
|
65
|
+
});
|
|
66
|
+
if (results.length > 1) {
|
|
67
|
+
model.setSearchResults(results, input.toLowerCase());
|
|
68
|
+
}
|
|
69
|
+
else if (results.length === 1) {
|
|
70
|
+
navToOption(results[0]);
|
|
71
|
+
}
|
|
72
|
+
else {
|
|
73
|
+
model.navToLocString(input, assemblyName);
|
|
74
|
+
}
|
|
71
75
|
}
|
|
72
76
|
}
|
|
73
77
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA+C;AAC/C,uCAA0C;AAC1C,6CAA+C;AAG/C,SAAS;AACT,gFAAuD;AACvD,
|
|
1
|
+
{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AACrC,4CAA+C;AAC/C,uCAA0C;AAC1C,6CAA+C;AAG/C,SAAS;AACT,gFAAuD;AACvD,iCAAgD;AAChD,0BAAkE;AAElE,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,GAAG,EAAE,CAAC,CAAC;IACpC,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,CAAC,CAAA;AAEH,SAAS,SAAS,CAAC,EACjB,KAAK,EACL,QAAQ,GAIT;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEjC,MAAM,EAAE,iBAAiB,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACtD,MAAM,EAAE,aAAa,EAAE,iBAAiB,EAAE,GAAG,KAAK,CAAA;IAClD,MAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,MAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,YAAY,CAAC,CAAA;IAEnD,SAAS,WAAW,CAAC,MAAkB;QACrC,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;QACrC,MAAM,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;QACnC,IAAI,QAAQ,EAAE;YACZ,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;YAC5C,IAAI,OAAO,EAAE;gBACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;aACzB;SACF;IACH,CAAC;IAED,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,KAAK,UAAU,oBAAoB,CAAC,MAAkB;QACpD,IAAI;YACF,IAAI,MAAM,CAAC,WAAW,EAAE,EAAE;gBACxB,WAAW,CAAC,MAAM,CAAC,CAAA;aACpB;iBAAM;gBACL,MAAM,KAAK,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;gBAC/B,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,CAAC,CAAA;gBACzC,MAAM,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,wBAAwB,KAAI,EAAE,CAAA;gBACxD,IACE,OAAO,CAAC,QAAQ,CAAC,KAAK,CAAC;oBACvB,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,EAC5D;oBACA,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;iBAC1C;qBAAM;oBACL,MAAM,OAAO,GAAG,MAAM,IAAA,mBAAY,EAAC;wBACjC,WAAW,EAAE,KAAK;wBAClB,UAAU,EAAE,OAAO;wBACnB,WAAW;wBACX,iBAAiB;wBACjB,iBAAiB;wBACjB,QAAQ;qBACT,CAAC,CAAA;oBAEF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;wBACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;qBACrD;yBAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;wBAC/B,WAAW,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAA;qBACxB;yBAAM;wBACL,KAAK,CAAC,cAAc,CAAC,KAAK,EAAE,YAAY,CAAC,CAAA;qBAC1C;iBACF;aACF;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAA;YAChB,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IACD,OAAO,CACL,8BAAC,6BAAmB,IAClB,QAAQ,EAAE,QAAQ,EAClB,QAAQ,EAAE,oBAAoB,EAC9B,YAAY,EAAE,YAAY,EAC1B,YAAY,EAAE,WAAW,CAAC,EAAE,CAC1B,IAAA,mBAAY,EAAC;YACX,WAAW;YACX,WAAW;YACX,iBAAiB;YACjB,iBAAiB;YACjB,QAAQ;SACT,CAAC,EAEJ,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE;YACd,OAAO,EAAE,UAAU;YACnB,SAAS,EAAE,OAAO,CAAC,aAAa;YAChC,KAAK,EAAE,EAAE,MAAM,EAAE,WAAO,EAAE,QAAQ,EAAE,OAAO,EAAE;YAC7C,UAAU,EAAE;gBACV,KAAK,EAAE;oBACL,OAAO,EAAE,CAAC;oBACV,MAAM,EAAE,iBAAa;oBACrB,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;iBACvD;aACF;SACF,GACD,CACH,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,SAAS,CAAC,CAAA"}
|
|
@@ -98,10 +98,13 @@ function SearchResultsDialog({ model, optAssemblyName, handleClose, }) {
|
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|
98
98
|
react_1.default.createElement(material_1.TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
|
|
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99
|
react_1.default.createElement(material_1.TableCell, { align: "right" },
|
|
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100
|
react_1.default.createElement(material_1.Button, { onClick: () => {
|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
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|
+
const location = result.getLocation();
|
|
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|
+
if (location) {
|
|
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|
+
handleClick(location);
|
|
104
|
+
const resultTrackId = result.getTrackId();
|
|
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|
+
if (resultTrackId) {
|
|
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|
+
model.showTrack(resultTrackId);
|
|
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|
+
}
|
|
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108
|
}
|
|
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|
handleClose();
|
|
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|
}, color: "primary", variant: "contained" }, "Go"))))))))))),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"SearchResultsDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,uCAA0C;AAC1C,qDAAoE;AACpE,6CAA+C;AAC/C,4CAgBsB;AACtB,sEAAiD;AAGjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,SAAwB,mBAAmB,CAAC,EAC1C,KAAK,EACL,eAAe,EACf,WAAW,GAKZ;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,wBAAM,EAAC,OAAO,CAAC,CAAA;IACzC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,IAAI,YAAY,GAAG,eAAe,CAAA;IAClC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE;QACrC,YAAY,GAAG,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA;KACvD;IACD,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;KAC3C;IACD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,YAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,qBAAqB,CAAC,CAAA;KAC/D;IACD,MAAM,eAAe,GAAG,QAAQ,CAAC,OAAO,CAAA;IAExC,SAAS,WAAW,CAAC,QAAgB;QACnC,IAAI;YACF,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CACpC,MAAM,CAAC,EAAE,CAAC,QAAQ,KAAK,MAAM,CAAC,OAAO,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aAC7C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,MAAM,iBAAiB,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC1E,MAAM,aAAa,GAAG,IAAA,mCAAiB,EACrC,iBAAiB,EACjB,IAAA,yBAAO,EAAC,KAAK,CAAC,EACd,OAAO,CACR,CAAA;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,MAAA,aAAa,CAAC,IAAI,0CAAE,KAAK,CAAA;aACjC;SACF;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW;QAC7C,8BAAC,sBAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,qBAAU,mBACG,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,IAAI,EAAC,OAAO;gBAEZ,8BAAC,eAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa,QACX,CAAC,CAAA,MAAA,KAAK,CAAC,aAAa,0CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,CAC9B,8BAAC,qBAAU;;YACY,yCAAI,KAAK,CAAC,WAAW,CAAK,CACpC,CACd,CAAC,CAAC,CAAC,CACF;YACE,8BAAC,qBAAU;;gBACW,yCAAI,KAAK,CAAC,WAAW,CAAK,CACnC;YACb,8BAAC,yBAAc,IAAC,SAAS,EAAE,gBAAK;gBAC9B,8BAAC,gBAAK;oBACJ,8BAAC,oBAAS;wBACR,8BAAC,mBAAQ;4BACP,8BAAC,oBAAS,eAAiB;4BAC3B,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;4BAC7C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;4BAC1C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;oBACZ,8BAAC,oBAAS,QACP,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACjC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE;wBAChC,8BAAC,oBAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,MAAM,CAAC,WAAW,EAAE,CACX;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO;4BACtB,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE;oCACZ,
|
|
1
|
+
{"version":3,"file":"SearchResultsDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,uCAA0C;AAC1C,qDAAoE;AACpE,6CAA+C;AAC/C,4CAgBsB;AACtB,sEAAiD;AAGjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,CAAC,CAAA;AAEH,SAAwB,mBAAmB,CAAC,EAC1C,KAAK,EACL,eAAe,EACf,WAAW,GAKZ;;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,EAAE,aAAa,EAAE,GAAG,IAAA,wBAAM,EAAC,OAAO,CAAC,CAAA;IACzC,MAAM,EAAE,eAAe,EAAE,GAAG,OAAO,CAAA;IACnC,IAAI,YAAY,GAAG,eAAe,CAAA;IAClC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE;QACrC,YAAY,GAAG,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA;KACvD;IACD,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;KAC3C;IACD,MAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,YAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,YAAY,YAAY,qBAAqB,CAAC,CAAA;KAC/D;IACD,MAAM,eAAe,GAAG,QAAQ,CAAC,OAAO,CAAA;IAExC,SAAS,WAAW,CAAC,QAAgB;QACnC,IAAI;YACF,MAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CACpC,MAAM,CAAC,EAAE,CAAC,QAAQ,KAAK,MAAM,CAAC,OAAO,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aAC7C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,MAAM,iBAAiB,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC1E,MAAM,aAAa,GAAG,IAAA,mCAAiB,EACrC,iBAAiB,EACjB,IAAA,yBAAO,EAAC,KAAK,CAAC,EACd,OAAO,CACR,CAAA;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,MAAA,aAAa,CAAC,IAAI,0CAAE,KAAK,CAAA;aACjC;SACF;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW;QAC7C,8BAAC,sBAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,qBAAU,mBACG,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE,GAAG,EAAE;oBACZ,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,IAAI,EAAC,OAAO;gBAEZ,8BAAC,eAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa,QACX,CAAC,CAAA,MAAA,KAAK,CAAC,aAAa,0CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,CAC9B,8BAAC,qBAAU;;YACY,yCAAI,KAAK,CAAC,WAAW,CAAK,CACpC,CACd,CAAC,CAAC,CAAC,CACF;YACE,8BAAC,qBAAU;;gBACW,yCAAI,KAAK,CAAC,WAAW,CAAK,CACnC;YACb,8BAAC,yBAAc,IAAC,SAAS,EAAE,gBAAK;gBAC9B,8BAAC,gBAAK;oBACJ,8BAAC,oBAAS;wBACR,8BAAC,mBAAQ;4BACP,8BAAC,oBAAS,eAAiB;4BAC3B,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;4BAC7C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;4BAC1C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;oBACZ,8BAAC,oBAAS,QACP,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC,CACjC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,GAAG,MAAM,CAAC,KAAK,EAAE,EAAE;wBAChC,8BAAC,oBAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,MAAM,CAAC,WAAW,EAAE,CACX;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO;4BACtB,8BAAC,iBAAM,IACL,OAAO,EAAE,GAAG,EAAE;oCACZ,MAAM,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;oCACrC,IAAI,QAAQ,EAAE;wCACZ,WAAW,CAAC,QAAQ,CAAC,CAAA;wCACrB,MAAM,aAAa,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;wCACzC,IAAI,aAAa,EAAE;4CACjB,KAAK,CAAC,SAAS,CAAC,aAAa,CAAC,CAAA;yCAC/B;qCACF;oCACD,WAAW,EAAE,CAAA;gCACf,CAAC,EACD,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,SAGZ,CACC,CACH,CACZ,CAAC,CACQ,CACN,CACO,CAChB,CACJ,CACa;QAChB,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE,KAAK,EAAC,SAAS,aAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC;AApJD,sCAoJC"}
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@@ -50,7 +50,7 @@ function getTrackName(track, session) {
|
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|
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50
|
const asm = session.assemblies.find(a => a.sequence === track.configuration);
|
|
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51
|
return (trackName ||
|
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52
|
(asm
|
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53
|
-
? `Reference Sequence (${(0, configuration_1.readConfObject)(asm, 'name')})`
|
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+
? `Reference Sequence (${(0, configuration_1.readConfObject)(asm, 'displayName') || (0, configuration_1.readConfObject)(asm, 'name')})`
|
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54
|
: 'Reference Sequence'));
|
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55
55
|
}
|
|
56
56
|
return trackName;
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AAErC,+DAIoC;AACpC,mFAA0D;AAC1D,6CAAkE;AAElE,4CAAoE;AACpE,uCAA0C;AAE1C,yDAIsC;AAEtC,QAAQ;AACR,4EAAuD;AACvD,sFAAwD;AACxD,sEAAiD;AAIjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,SAAS,YAAY,CACnB,KAAqB,EACrB,OAAgD;IAEhD,MAAM,SAAS,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,IAAI,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACvD,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,aAAa,CAAC,CAAA;QAC5E,OAAO,CACL,SAAS;YACT,CAAC,GAAG;gBACF,CAAC,CAAC,
|
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1
|
+
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AAErC,+DAIoC;AACpC,mFAA0D;AAC1D,6CAAkE;AAElE,4CAAoE;AACpE,uCAA0C;AAE1C,yDAIsC;AAEtC,QAAQ;AACR,4EAAuD;AACvD,sFAAwD;AACxD,sEAAiD;AAIjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,SAAS,YAAY,CACnB,KAAqB,EACrB,OAAgD;IAEhD,MAAM,SAAS,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,IAAI,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACvD,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,aAAa,CAAC,CAAA;QAC5E,OAAO,CACL,SAAS;YACT,CAAC,GAAG;gBACF,CAAC,CAAC,uBACE,IAAA,8BAAc,EAAC,GAAG,EAAE,aAAa,CAAC,IAAI,IAAA,8BAAc,EAAC,GAAG,EAAE,MAAM,CAClE,GAAG;gBACL,CAAC,CAAC,oBAAoB,CAAC,CAC1B,CAAA;KACF;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AACD,MAAM,UAAU,GAAG,eAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;IAE9C,MAAM,UAAU,GAAG,IAAA,qBAAa,EAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,WAAW,GAAG,CAAC,KAAuC,EAAE,EAAE;QAC9D,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;QAClC,IAAI,MAAM,CAAC,UAAU,EAAE;YACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;YAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;YAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;SAClC;IACH,CAAC,CAAA;IAED,MAAM,KAAK,GAAG;QACZ,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,8BAAC,gBAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,wCACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,8BAAC,uBAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,8BAAC,eAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QACb,8BAAC,qBAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,CACC;QACb,8BAAC,qBAAU,OACL,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,8BAAC,kBAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,8BAAC,uBAAa,OACR,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}
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@@ -3,7 +3,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
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3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
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};
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Object.defineProperty(exports, "__esModule", { value: true });
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6
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-
exports.fetchResults = exports.dedupe = void 0;
|
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6
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+
exports.splitLast = exports.fetchResults = exports.dedupe = void 0;
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7
|
const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
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8
|
function dedupe(results = [], cb) {
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9
|
return results.filter((elt, idx, self) => idx === self.findIndex(t => cb(t) === cb(elt)));
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@@ -22,4 +22,17 @@ async function fetchResults({ queryString, searchType, searchScope, rankSearchRe
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22
|
return dedupe([...(refNameResults || []), ...(textSearchResults || [])], elt => elt.getId());
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}
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|
exports.fetchResults = fetchResults;
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+
// splits on the last instance of a character
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+
function splitLast(str, split) {
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+
const lastIndex = str.lastIndexOf(split);
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if (lastIndex === -1) {
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return [str, ''];
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}
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else {
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const before = str.slice(0, lastIndex);
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return [before, after];
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+
}
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}
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exports.splitLast = splitLast;
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|
//# sourceMappingURL=util.js.map
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@@ -1 +1 @@
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1
|
-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/util.ts"],"names":[],"mappings":";;;;;;AAEA,uFAA6D;AAI7D,SAAgB,MAAM,CACpB,UAAwB,EAAE,EAC1B,EAAkC;IAElC,OAAO,OAAO,CAAC,MAAM,CACnB,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CACnE,CAAA;AACH,CAAC;AAPD,wBAOC;AAEM,KAAK,UAAU,YAAY,CAAC,EACjC,WAAW,EACX,UAAU,EACV,WAAW,EACX,iBAAiB,EACjB,iBAAiB,EACjB,QAAQ,GAQT;;IACC,IAAI,CAAC,iBAAiB,EAAE;QACtB,OAAO,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;KACvC;IAED,MAAM,iBAAiB,GAAG,MAAM,CAAA,iBAAiB,aAAjB,iBAAiB,uBAAjB,iBAAiB,CAAE,MAAM,CACvD;QACE,WAAW;QACX,UAAU;KACX,EACD,WAAW,EACX,iBAAiB,CAClB,CAAA,CAAA;IAED,MAAM,cAAc,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,0CACxC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,EACtE,KAAK,CAAC,CAAC,EAAE,EAAE,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,qBAAU,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAEzC,OAAO,MAAM,CACX,CAAC,GAAG,CAAC,cAAc,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,iBAAiB,IAAI,EAAE,CAAC,CAAC,EACzD,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,EAAE,CACnB,CAAA;AACH,CAAC;AArCD,oCAqCC"}
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1
|
+
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/util.ts"],"names":[],"mappings":";;;;;;AAEA,uFAA6D;AAI7D,SAAgB,MAAM,CACpB,UAAwB,EAAE,EAC1B,EAAkC;IAElC,OAAO,OAAO,CAAC,MAAM,CACnB,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CACnE,CAAA;AACH,CAAC;AAPD,wBAOC;AAEM,KAAK,UAAU,YAAY,CAAC,EACjC,WAAW,EACX,UAAU,EACV,WAAW,EACX,iBAAiB,EACjB,iBAAiB,EACjB,QAAQ,GAQT;;IACC,IAAI,CAAC,iBAAiB,EAAE;QACtB,OAAO,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;KACvC;IAED,MAAM,iBAAiB,GAAG,MAAM,CAAA,iBAAiB,aAAjB,iBAAiB,uBAAjB,iBAAiB,CAAE,MAAM,CACvD;QACE,WAAW;QACX,UAAU;KACX,EACD,WAAW,EACX,iBAAiB,CAClB,CAAA,CAAA;IAED,MAAM,cAAc,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,0CACxC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,EACtE,KAAK,CAAC,CAAC,EAAE,EAAE,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,qBAAU,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAEzC,OAAO,MAAM,CACX,CAAC,GAAG,CAAC,cAAc,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,iBAAiB,IAAI,EAAE,CAAC,CAAC,EACzD,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,EAAE,CACnB,CAAA;AACH,CAAC;AArCD,oCAqCC;AAED,6CAA6C;AAC7C,SAAgB,SAAS,CAAC,GAAW,EAAE,KAAa;IAClD,MAAM,SAAS,GAAG,GAAG,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;IACxC,IAAI,SAAS,KAAK,CAAC,CAAC,EAAE;QACpB,OAAO,CAAC,GAAG,EAAE,EAAE,CAAC,CAAA;KACjB;SAAM;QACL,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAA;QACtC,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QACtC,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;KACvB;AACH,CAAC;AATD,8BASC"}
|
|
@@ -57,7 +57,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
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hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
58
58
|
hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
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|
hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
|
|
60
|
-
trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<
|
|
60
|
+
trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
61
61
|
trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
|
|
62
62
|
showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|
|
63
63
|
showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
|