@jbrowse/plugin-linear-genome-view 2.1.0 → 2.1.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (139) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +27 -54
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -1
  3. package/dist/BaseLinearDisplay/components/Block.js +17 -28
  4. package/dist/BaseLinearDisplay/components/Block.js.map +1 -1
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.js +19 -21
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +1 -1
  7. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +27 -48
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
  9. package/dist/BaseLinearDisplay/components/Tooltip.js +29 -58
  10. package/dist/BaseLinearDisplay/components/Tooltip.js.map +1 -1
  11. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +242 -363
  12. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
  13. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +1 -1
  14. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
  15. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +77 -129
  16. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
  17. package/dist/LinearBareDisplay/configSchema.js +2 -2
  18. package/dist/LinearBareDisplay/configSchema.js.map +1 -1
  19. package/dist/LinearBareDisplay/model.js +13 -19
  20. package/dist/LinearBareDisplay/model.js.map +1 -1
  21. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +14 -31
  22. package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -1
  23. package/dist/LinearBasicDisplay/configSchema.js +3 -3
  24. package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
  25. package/dist/LinearBasicDisplay/model.js +119 -147
  26. package/dist/LinearBasicDisplay/model.js.map +1 -1
  27. package/dist/LinearGenomeView/components/CenterLine.js +11 -12
  28. package/dist/LinearGenomeView/components/CenterLine.js.map +1 -1
  29. package/dist/LinearGenomeView/components/ExportSvgDialog.js +30 -96
  30. package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
  31. package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +9 -0
  32. package/dist/LinearGenomeView/components/GetSequenceDialog.js +172 -0
  33. package/dist/LinearGenomeView/components/GetSequenceDialog.js.map +1 -0
  34. package/dist/LinearGenomeView/components/Gridlines.js +18 -20
  35. package/dist/LinearGenomeView/components/Gridlines.js.map +1 -1
  36. package/dist/LinearGenomeView/components/Header.js +26 -31
  37. package/dist/LinearGenomeView/components/Header.js.map +1 -1
  38. package/dist/LinearGenomeView/components/HelpDialog.js +10 -11
  39. package/dist/LinearGenomeView/components/HelpDialog.js.map +1 -1
  40. package/dist/LinearGenomeView/components/ImportForm.js +91 -158
  41. package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
  42. package/dist/LinearGenomeView/components/LinearGenomeView.js +20 -21
  43. package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  44. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +87 -157
  45. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
  46. package/dist/LinearGenomeView/components/MiniControls.js +16 -32
  47. package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
  48. package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +0 -11
  49. package/dist/LinearGenomeView/components/OverviewRubberBand.js +44 -76
  50. package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
  51. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +14 -8
  52. package/dist/LinearGenomeView/components/OverviewScaleBar.js +94 -117
  53. package/dist/LinearGenomeView/components/OverviewScaleBar.js.map +1 -1
  54. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +107 -169
  55. package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
  56. package/dist/LinearGenomeView/components/RubberBand.js +51 -71
  57. package/dist/LinearGenomeView/components/RubberBand.js.map +1 -1
  58. package/dist/LinearGenomeView/components/Ruler.js +17 -18
  59. package/dist/LinearGenomeView/components/Ruler.js.map +1 -1
  60. package/dist/LinearGenomeView/components/ScaleBar.js +37 -58
  61. package/dist/LinearGenomeView/components/ScaleBar.js.map +1 -1
  62. package/dist/LinearGenomeView/components/SearchBox.js +73 -133
  63. package/dist/LinearGenomeView/components/SearchBox.js.map +1 -1
  64. package/dist/LinearGenomeView/components/SearchResultsDialog.js +38 -36
  65. package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
  66. package/dist/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} +0 -0
  67. package/dist/LinearGenomeView/components/SequenceSearchDialog.js +104 -0
  68. package/dist/LinearGenomeView/components/SequenceSearchDialog.js.map +1 -0
  69. package/dist/LinearGenomeView/components/TrackContainer.js +28 -30
  70. package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -1
  71. package/dist/LinearGenomeView/components/TrackLabel.js +37 -71
  72. package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
  73. package/dist/LinearGenomeView/components/TracksContainer.js +32 -49
  74. package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
  75. package/dist/LinearGenomeView/components/ZoomControls.js +15 -32
  76. package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -1
  77. package/dist/LinearGenomeView/components/util.d.ts +1 -0
  78. package/dist/LinearGenomeView/components/util.js +28 -88
  79. package/dist/LinearGenomeView/components/util.js.map +1 -1
  80. package/dist/LinearGenomeView/index.d.ts +4 -4
  81. package/dist/LinearGenomeView/index.js +380 -430
  82. package/dist/LinearGenomeView/index.js.map +1 -1
  83. package/dist/LinearGenomeView/util.js +17 -36
  84. package/dist/LinearGenomeView/util.js.map +1 -1
  85. package/dist/index.js +75 -146
  86. package/dist/index.js.map +1 -1
  87. package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +9 -0
  88. package/esm/LinearGenomeView/components/{SequenceDialog.js → GetSequenceDialog.js} +4 -7
  89. package/esm/LinearGenomeView/components/GetSequenceDialog.js.map +1 -0
  90. package/esm/LinearGenomeView/components/ImportForm.js +39 -42
  91. package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
  92. package/esm/LinearGenomeView/components/LinearGenomeView.js +2 -2
  93. package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
  94. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +2 -1
  95. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
  96. package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +0 -11
  97. package/esm/LinearGenomeView/components/OverviewRubberBand.js +4 -12
  98. package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
  99. package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +14 -8
  100. package/esm/LinearGenomeView/components/OverviewScaleBar.js +0 -2
  101. package/esm/LinearGenomeView/components/OverviewScaleBar.js.map +1 -1
  102. package/esm/LinearGenomeView/components/RefNameAutocomplete.js +26 -6
  103. package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
  104. package/esm/LinearGenomeView/components/RubberBand.js +0 -1
  105. package/esm/LinearGenomeView/components/RubberBand.js.map +1 -1
  106. package/esm/LinearGenomeView/components/SearchBox.js +37 -33
  107. package/esm/LinearGenomeView/components/SearchBox.js.map +1 -1
  108. package/esm/LinearGenomeView/components/SearchResultsDialog.js +7 -4
  109. package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
  110. package/esm/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} +0 -0
  111. package/esm/LinearGenomeView/components/SequenceSearchDialog.js +76 -0
  112. package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map +1 -0
  113. package/esm/LinearGenomeView/components/TrackLabel.js +1 -1
  114. package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
  115. package/esm/LinearGenomeView/components/util.d.ts +1 -0
  116. package/esm/LinearGenomeView/components/util.js +12 -0
  117. package/esm/LinearGenomeView/components/util.js.map +1 -1
  118. package/esm/LinearGenomeView/index.d.ts +4 -4
  119. package/esm/LinearGenomeView/index.js +26 -19
  120. package/esm/LinearGenomeView/index.js.map +1 -1
  121. package/package.json +2 -3
  122. package/src/LinearGenomeView/components/{SequenceDialog.tsx → GetSequenceDialog.tsx} +4 -17
  123. package/src/LinearGenomeView/components/ImportForm.tsx +40 -42
  124. package/src/LinearGenomeView/components/LinearGenomeView.tsx +3 -3
  125. package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +4 -4
  126. package/src/LinearGenomeView/components/OverviewRubberBand.tsx +5 -15
  127. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +0 -2
  128. package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +27 -8
  129. package/src/LinearGenomeView/components/RubberBand.tsx +0 -1
  130. package/src/LinearGenomeView/components/SearchBox.tsx +39 -36
  131. package/src/LinearGenomeView/components/SearchResultsDialog.tsx +7 -4
  132. package/src/LinearGenomeView/components/SequenceSearchDialog.tsx +165 -0
  133. package/src/LinearGenomeView/components/TrackLabel.tsx +3 -1
  134. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +16 -16
  135. package/src/LinearGenomeView/components/util.ts +12 -0
  136. package/src/LinearGenomeView/index.tsx +32 -25
  137. package/dist/LinearGenomeView/components/SequenceDialog.js +0 -242
  138. package/dist/LinearGenomeView/components/SequenceDialog.js.map +0 -1
  139. package/esm/LinearGenomeView/components/SequenceDialog.js.map +0 -1
@@ -57,7 +57,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
57
57
  hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
58
58
  hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
59
59
  hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
60
- trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
60
+ trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
61
61
  trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
62
62
  showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
63
63
  showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
@@ -128,9 +128,9 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
128
128
  toggleShowGridlines(): void;
129
129
  scrollTo(offsetPx: number): number;
130
130
  zoomTo(bpPerPx: number): number;
131
- setOffsets(left: undefined | BpOffset, right: undefined | BpOffset): void;
132
- setSearchResults(results: BaseResult[] | undefined, query: string | undefined): void;
133
- setSequenceDialogOpen(open: boolean): void;
131
+ setOffsets(left?: BpOffset, right?: BpOffset): void;
132
+ setSearchResults(results?: BaseResult[], query?: string): void;
133
+ setGetSequenceDialogOpen(open: boolean): void;
134
134
  setNewView(bpPerPx: number, offsetPx: number): void;
135
135
  horizontallyFlip(): void;
136
136
  showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;