@jbrowse/plugin-linear-genome-view 2.1.0 → 2.1.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +27 -54
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -1
- package/dist/BaseLinearDisplay/components/Block.js +17 -28
- package/dist/BaseLinearDisplay/components/Block.js.map +1 -1
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +19 -21
- package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +1 -1
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +27 -48
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -1
- package/dist/BaseLinearDisplay/components/Tooltip.js +29 -58
- package/dist/BaseLinearDisplay/components/Tooltip.js.map +1 -1
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +242 -363
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -1
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +1 -1
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -1
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +77 -129
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -1
- package/dist/LinearBareDisplay/configSchema.js +2 -2
- package/dist/LinearBareDisplay/configSchema.js.map +1 -1
- package/dist/LinearBareDisplay/model.js +13 -19
- package/dist/LinearBareDisplay/model.js.map +1 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +14 -31
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -1
- package/dist/LinearBasicDisplay/configSchema.js +3 -3
- package/dist/LinearBasicDisplay/configSchema.js.map +1 -1
- package/dist/LinearBasicDisplay/model.js +119 -147
- package/dist/LinearBasicDisplay/model.js.map +1 -1
- package/dist/LinearGenomeView/components/CenterLine.js +11 -12
- package/dist/LinearGenomeView/components/CenterLine.js.map +1 -1
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +30 -96
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/GetSequenceDialog.d.ts +9 -0
- package/dist/LinearGenomeView/components/GetSequenceDialog.js +172 -0
- package/dist/LinearGenomeView/components/GetSequenceDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/Gridlines.js +18 -20
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -1
- package/dist/LinearGenomeView/components/Header.js +26 -31
- package/dist/LinearGenomeView/components/Header.js.map +1 -1
- package/dist/LinearGenomeView/components/HelpDialog.js +10 -11
- package/dist/LinearGenomeView/components/HelpDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/ImportForm.js +91 -158
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeView.js +20 -21
- package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +87 -157
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
- package/dist/LinearGenomeView/components/MiniControls.js +16 -32
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewRubberBand.d.ts +0 -11
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +44 -76
- package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +14 -8
- package/dist/LinearGenomeView/components/OverviewScaleBar.js +94 -117
- package/dist/LinearGenomeView/components/OverviewScaleBar.js.map +1 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +107 -169
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/dist/LinearGenomeView/components/RubberBand.js +51 -71
- package/dist/LinearGenomeView/components/RubberBand.js.map +1 -1
- package/dist/LinearGenomeView/components/Ruler.js +17 -18
- package/dist/LinearGenomeView/components/Ruler.js.map +1 -1
- package/dist/LinearGenomeView/components/ScaleBar.js +37 -58
- package/dist/LinearGenomeView/components/ScaleBar.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchBox.js +73 -133
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +38 -36
- package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
- package/dist/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} +0 -0
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js +104 -0
- package/dist/LinearGenomeView/components/SequenceSearchDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/TrackContainer.js +28 -30
- package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/TrackLabel.js +37 -71
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.js +32 -49
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -1
- package/dist/LinearGenomeView/components/ZoomControls.js +15 -32
- package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -1
- package/dist/LinearGenomeView/components/util.d.ts +1 -0
- package/dist/LinearGenomeView/components/util.js +28 -88
- package/dist/LinearGenomeView/components/util.js.map +1 -1
- package/dist/LinearGenomeView/index.d.ts +4 -4
- package/dist/LinearGenomeView/index.js +380 -430
- package/dist/LinearGenomeView/index.js.map +1 -1
- package/dist/LinearGenomeView/util.js +17 -36
- package/dist/LinearGenomeView/util.js.map +1 -1
- package/dist/index.js +75 -146
- package/dist/index.js.map +1 -1
- package/esm/LinearGenomeView/components/GetSequenceDialog.d.ts +9 -0
- package/esm/LinearGenomeView/components/{SequenceDialog.js → GetSequenceDialog.js} +4 -7
- package/esm/LinearGenomeView/components/GetSequenceDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/ImportForm.js +39 -42
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeView.js +2 -2
- package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +2 -1
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +0 -11
- package/esm/LinearGenomeView/components/OverviewRubberBand.js +4 -12
- package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -1
- package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +14 -8
- package/esm/LinearGenomeView/components/OverviewScaleBar.js +0 -2
- package/esm/LinearGenomeView/components/OverviewScaleBar.js.map +1 -1
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +26 -6
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -1
- package/esm/LinearGenomeView/components/RubberBand.js +0 -1
- package/esm/LinearGenomeView/components/RubberBand.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchBox.js +37 -33
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -1
- package/esm/LinearGenomeView/components/SearchResultsDialog.js +7 -4
- package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +1 -1
- package/esm/LinearGenomeView/components/{SequenceDialog.d.ts → SequenceSearchDialog.d.ts} +0 -0
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js +76 -0
- package/esm/LinearGenomeView/components/SequenceSearchDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/TrackLabel.js +1 -1
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -1
- package/esm/LinearGenomeView/components/util.d.ts +1 -0
- package/esm/LinearGenomeView/components/util.js +12 -0
- package/esm/LinearGenomeView/components/util.js.map +1 -1
- package/esm/LinearGenomeView/index.d.ts +4 -4
- package/esm/LinearGenomeView/index.js +26 -19
- package/esm/LinearGenomeView/index.js.map +1 -1
- package/package.json +2 -3
- package/src/LinearGenomeView/components/{SequenceDialog.tsx → GetSequenceDialog.tsx} +4 -17
- package/src/LinearGenomeView/components/ImportForm.tsx +40 -42
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +3 -3
- package/src/LinearGenomeView/components/LinearGenomeViewSvg.tsx +4 -4
- package/src/LinearGenomeView/components/OverviewRubberBand.tsx +5 -15
- package/src/LinearGenomeView/components/OverviewScaleBar.tsx +0 -2
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +27 -8
- package/src/LinearGenomeView/components/RubberBand.tsx +0 -1
- package/src/LinearGenomeView/components/SearchBox.tsx +39 -36
- package/src/LinearGenomeView/components/SearchResultsDialog.tsx +7 -4
- package/src/LinearGenomeView/components/SequenceSearchDialog.tsx +165 -0
- package/src/LinearGenomeView/components/TrackLabel.tsx +3 -1
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +16 -16
- package/src/LinearGenomeView/components/util.ts +12 -0
- package/src/LinearGenomeView/index.tsx +32 -25
- package/dist/LinearGenomeView/components/SequenceDialog.js +0 -242
- package/dist/LinearGenomeView/components/SequenceDialog.js.map +0 -1
- package/esm/LinearGenomeView/components/SequenceDialog.js.map +0 -1
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|
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|
|
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|
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const asm = session.assemblies.find(a => a.sequence === track.configuration);
|
|
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|
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|
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|
(asm
|
|
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|
-
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|
|
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|
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? `Reference Sequence (${(0, configuration_1.readConfObject)(asm, 'displayName') || (0, configuration_1.readConfObject)(asm, 'name')})`
|
|
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54
|
: 'Reference Sequence'));
|
|
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|
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|
|
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|
return trackName;
|
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|
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var popupState = (0, hooks_1.usePopupState)({
|
|
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|
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const TrackLabel = react_1.default.forwardRef(({ track, className }, ref) => {
|
|
59
|
+
var _a;
|
|
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|
+
const { classes, cx } = useStyles();
|
|
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|
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const view = (0, util_1.getContainingView)(track);
|
|
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|
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const session = (0, util_1.getSession)(track);
|
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|
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const trackConf = track.configuration;
|
|
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|
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const trackId = (0, configuration_1.getConf)(track, 'trackId');
|
|
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|
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const trackName = getTrackName(track, session);
|
|
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|
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const popupState = (0, hooks_1.usePopupState)({
|
|
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|
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|
|
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|
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|
|
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|
});
|
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|
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|
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|
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const onDragStart = (event) => {
|
|
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|
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|
|
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72
|
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|
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|
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|
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|
|
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|
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const parent = target.parentNode;
|
|
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|
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|
|
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75
|
view.setDraggingTrackId(track.id);
|
|
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76
|
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|
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77
|
};
|
|
115
|
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|
|
78
|
+
const items = [
|
|
79
|
+
...(((_a = session.getTrackActionMenuItems) === null || _a === void 0 ? void 0 : _a.call(session, trackConf)) || []),
|
|
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|
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...track.trackMenuItems(),
|
|
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|
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].sort((a, b) => (b.priority || 0) - (a.priority || 0));
|
|
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82
|
return (react_1.default.createElement(material_1.Paper, { ref: ref, className: cx(className, classes.root) },
|
|
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|
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react_1.default.createElement("span", { draggable: true, className: classes.dragHandle, onDragStart: onDragStart, onDragEnd:
|
|
83
|
+
react_1.default.createElement("span", { draggable: true, className: classes.dragHandle, onDragStart: onDragStart, onDragEnd: () => view.setDraggingTrackId(undefined), "data-testid": `dragHandle-${view.id}-${trackId}` },
|
|
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84
|
react_1.default.createElement(DragIndicator_1.default, { className: classes.dragHandleIcon, fontSize: "small" })),
|
|
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|
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react_1.default.createElement(material_1.IconButton, { onClick:
|
|
85
|
+
react_1.default.createElement(material_1.IconButton, { onClick: () => view.hideTrack(trackId), className: classes.iconButton, title: "close this track", color: "secondary" },
|
|
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86
|
react_1.default.createElement(Close_1.default, { fontSize: "small" })),
|
|
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87
|
react_1.default.createElement(material_1.Typography, { variant: "body1", component: "span", className: classes.trackName }, trackName),
|
|
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|
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react_1.default.createElement(material_1.IconButton,
|
|
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|
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react_1.default.createElement(material_1.IconButton, { ...(0, hooks_1.bindTrigger)(popupState), className: classes.iconButton, color: "secondary", "data-testid": "track_menu_icon", disabled: !items.length },
|
|
123
89
|
react_1.default.createElement(MoreVert_1.default, { fontSize: "small" })),
|
|
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|
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react_1.default.createElement(CascadingMenu_1.default,
|
|
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|
+
react_1.default.createElement(CascadingMenu_1.default, { ...(0, hooks_1.bindPopover)(popupState), onMenuItemClick: (_, callback) => callback(), menuItems: items, popupState: popupState })));
|
|
125
91
|
});
|
|
126
92
|
exports.default = (0, mobx_react_1.observer)(TrackLabel);
|
|
127
93
|
//# sourceMappingURL=TrackLabel.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"TrackLabel.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TrackLabel.tsx"],"names":[],"mappings":";;;;;AAAA,kDAAyB;AACzB,2CAAqC;AAErC,+DAIoC;AACpC,mFAA0D;AAC1D,6CAAkE;AAElE,4CAAoE;AACpE,uCAA0C;AAE1C,yDAIsC;AAEtC,QAAQ;AACR,4EAAuD;AACvD,sFAAwD;AACxD,sEAAiD;AAIjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC;IACvC,IAAI,EAAE;QACJ,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;QACtD,SAAS,EAAE;YACT,UAAU,EAAE,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK;SAC3C;QACD,UAAU,EAAE,KAAK,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC,YAAY,CAAC,EAAE;YACnD,QAAQ,EAAE,KAAK,CAAC,WAAW,CAAC,QAAQ,CAAC,QAAQ;SAC9C,CAAC;KACH;IACD,SAAS,EAAE;QACT,MAAM,EAAE,QAAQ;QAChB,KAAK,EAAE,KAAK;QACZ,QAAQ,EAAE,QAAQ;QAClB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,MAAM,EAAE,MAAM;QACd,KAAK,EAAE,SAAS;KACjB;IACD,cAAc,EAAE;QACd,OAAO,EAAE,cAAc;QACvB,aAAa,EAAE,QAAQ;QACvB,aAAa,EAAE,MAAM;KACtB;IACD,UAAU,EAAE;QACV,OAAO,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;KAC1B;CACF,CAAC,CAAC,CAAA;AASH,SAAS,YAAY,CACnB,KAAqB,EACrB,OAAgD;IAEhD,MAAM,SAAS,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,CAAA;IACxC,IAAI,IAAA,uBAAO,EAAC,KAAK,EAAE,MAAM,CAAC,KAAK,wBAAwB,EAAE;QACvD,MAAM,GAAG,GAAG,OAAO,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,aAAa,CAAC,CAAA;QAC5E,OAAO,CACL,SAAS;YACT,CAAC,GAAG;gBACF,CAAC,CAAC,uBACE,IAAA,8BAAc,EAAC,GAAG,EAAE,aAAa,CAAC,IAAI,IAAA,8BAAc,EAAC,GAAG,EAAE,MAAM,CAClE,GAAG;gBACL,CAAC,CAAC,oBAAoB,CAAC,CAC1B,CAAA;KACF;IACD,OAAO,SAAS,CAAA;AAClB,CAAC;AACD,MAAM,UAAU,GAAG,eAAK,CAAC,UAAU,CACjC,CAAC,EAAE,KAAK,EAAE,SAAS,EAAE,EAAE,GAAG,EAAE,EAAE;;IAC5B,MAAM,EAAE,OAAO,EAAE,EAAE,EAAE,GAAG,SAAS,EAAE,CAAA;IACnC,MAAM,IAAI,GAAG,IAAA,wBAAiB,EAAC,KAAK,CAAQ,CAAA;IAC5C,MAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACjC,MAAM,SAAS,GAAG,KAAK,CAAC,aAAa,CAAA;IACrC,MAAM,OAAO,GAAG,IAAA,uBAAO,EAAC,KAAK,EAAE,SAAS,CAAC,CAAA;IACzC,MAAM,SAAS,GAAG,YAAY,CAAC,KAAK,EAAE,OAAO,CAAC,CAAA;IAE9C,MAAM,UAAU,GAAG,IAAA,qBAAa,EAAC;QAC/B,OAAO,EAAE,gBAAgB;QACzB,OAAO,EAAE,SAAS;KACnB,CAAC,CAAA;IAEF,MAAM,WAAW,GAAG,CAAC,KAAuC,EAAE,EAAE;QAC9D,MAAM,MAAM,GAAG,KAAK,CAAC,aAAa,CAAA;QAClC,IAAI,MAAM,CAAC,UAAU,EAAE;YACrB,MAAM,MAAM,GAAG,MAAM,CAAC,UAAyB,CAAA;YAC/C,KAAK,CAAC,YAAY,CAAC,YAAY,CAAC,MAAM,EAAE,EAAE,EAAE,EAAE,CAAC,CAAA;YAC/C,IAAI,CAAC,kBAAkB,CAAC,KAAK,CAAC,EAAE,CAAC,CAAA;SAClC;IACH,CAAC,CAAA;IAED,MAAM,KAAK,GAAG;QACZ,GAAG,CAAC,CAAA,MAAA,OAAO,CAAC,uBAAuB,wDAAG,SAAS,CAAC,KAAI,EAAE,CAAC;QACvD,GAAG,KAAK,CAAC,cAAc,EAAE;KAC1B,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,QAAQ,IAAI,CAAC,CAAC,CAAC,CAAA;IAEvD,OAAO,CACL,8BAAC,gBAAK,IAAC,GAAG,EAAE,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,SAAS,EAAE,OAAO,CAAC,IAAI,CAAC;QACrD,wCACE,SAAS,QACT,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,WAAW,EAAE,WAAW,EACxB,SAAS,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,kBAAkB,CAAC,SAAS,CAAC,iBACtC,cAAc,IAAI,CAAC,EAAE,IAAI,OAAO,EAAE;YAE/C,8BAAC,uBAAQ,IAAC,SAAS,EAAE,OAAO,CAAC,cAAc,EAAE,QAAQ,EAAC,OAAO,GAAG,CAC3D;QACP,8BAAC,qBAAU,IACT,OAAO,EAAE,GAAG,EAAE,CAAC,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,EACtC,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,kBAAkB,EACxB,KAAK,EAAC,WAAW;YAEjB,8BAAC,eAAS,IAAC,QAAQ,EAAC,OAAO,GAAG,CACnB;QACb,8BAAC,qBAAU,IACT,OAAO,EAAC,OAAO,EACf,SAAS,EAAC,MAAM,EAChB,SAAS,EAAE,OAAO,CAAC,SAAS,IAE3B,SAAS,CACC;QACb,8BAAC,qBAAU,OACL,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,SAAS,EAAE,OAAO,CAAC,UAAU,EAC7B,KAAK,EAAC,WAAW,iBACL,iBAAiB,EAC7B,QAAQ,EAAE,CAAC,KAAK,CAAC,MAAM;YAEvB,8BAAC,kBAAY,IAAC,QAAQ,EAAC,OAAO,GAAG,CACtB;QACb,8BAAC,uBAAa,OACR,IAAA,mBAAW,EAAC,UAAU,CAAC,EAC3B,eAAe,EAAE,CAAC,CAAU,EAAE,QAAkB,EAAE,EAAE,CAAC,QAAQ,EAAE,EAC/D,SAAS,EAAE,KAAK,EAChB,UAAU,EAAE,UAAU,GACtB,CACI,CACT,CAAA;AACH,CAAC,CACF,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,UAAU,CAAC,CAAA"}
|
|
@@ -22,36 +22,20 @@ var __importStar = (this && this.__importStar) || function (mod) {
|
|
|
22
22
|
__setModuleDefault(result, mod);
|
|
23
23
|
return result;
|
|
24
24
|
};
|
|
25
|
-
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|
|
26
|
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|
|
27
|
-
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|
|
28
|
-
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|
|
29
|
-
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|
|
30
|
-
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|
|
31
|
-
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|
|
32
|
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|
|
33
|
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finally {
|
|
34
|
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|
|
35
|
-
if (r && !r.done && (m = i["return"])) m.call(i);
|
|
36
|
-
}
|
|
37
|
-
finally { if (e) throw e.error; }
|
|
38
|
-
}
|
|
39
|
-
return ar;
|
|
40
|
-
};
|
|
41
25
|
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
42
26
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
43
27
|
};
|
|
44
28
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
45
|
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|
|
46
|
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|
|
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|
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|
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|
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|
|
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|
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52
|
-
|
|
53
|
-
|
|
54
|
-
|
|
29
|
+
const react_1 = __importStar(require("react"));
|
|
30
|
+
const mui_1 = require("tss-react/mui");
|
|
31
|
+
const mobx_react_1 = require("mobx-react");
|
|
32
|
+
const normalize_wheel_1 = __importDefault(require("normalize-wheel"));
|
|
33
|
+
const __1 = require("..");
|
|
34
|
+
const RubberBand_1 = __importDefault(require("./RubberBand"));
|
|
35
|
+
const ScaleBar_1 = __importDefault(require("./ScaleBar"));
|
|
36
|
+
const Gridlines_1 = __importDefault(require("./Gridlines"));
|
|
37
|
+
const CenterLine_1 = __importDefault(require("./CenterLine"));
|
|
38
|
+
const useStyles = (0, mui_1.makeStyles)()({
|
|
55
39
|
tracksContainer: {
|
|
56
40
|
position: 'relative',
|
|
57
41
|
overflow: 'hidden',
|
|
@@ -61,29 +45,28 @@ var useStyles = (0, mui_1.makeStyles)()({
|
|
|
61
45
|
height: 3,
|
|
62
46
|
},
|
|
63
47
|
});
|
|
64
|
-
function TracksContainer(
|
|
65
|
-
|
|
66
|
-
var classes = useStyles().classes;
|
|
48
|
+
function TracksContainer({ children, model, }) {
|
|
49
|
+
const { classes } = useStyles();
|
|
67
50
|
// refs are to store these variables to avoid repeated rerenders associated
|
|
68
51
|
// with useState/setState
|
|
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|
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|
|
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|
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|
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(0, react_1.useEffect)(
|
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76
|
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|
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52
|
+
const delta = (0, react_1.useRef)(0);
|
|
53
|
+
const scheduled = (0, react_1.useRef)(false);
|
|
54
|
+
const timeout = (0, react_1.useRef)();
|
|
55
|
+
const ref = (0, react_1.useRef)(null);
|
|
56
|
+
const prevX = (0, react_1.useRef)(0);
|
|
57
|
+
const [mouseDragging, setMouseDragging] = (0, react_1.useState)(false);
|
|
58
|
+
(0, react_1.useEffect)(() => {
|
|
59
|
+
let cleanup = () => { };
|
|
77
60
|
function globalMouseMove(event) {
|
|
78
61
|
event.preventDefault();
|
|
79
|
-
|
|
80
|
-
|
|
62
|
+
const currX = event.clientX;
|
|
63
|
+
const distance = currX - prevX.current;
|
|
81
64
|
if (distance) {
|
|
82
65
|
// use rAF to make it so multiple event handlers aren't fired per-frame
|
|
83
66
|
// see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
|
|
84
67
|
if (!scheduled.current) {
|
|
85
68
|
scheduled.current = true;
|
|
86
|
-
window.requestAnimationFrame(
|
|
69
|
+
window.requestAnimationFrame(() => {
|
|
87
70
|
model.horizontalScroll(-distance);
|
|
88
71
|
scheduled.current = false;
|
|
89
72
|
prevX.current = event.clientX;
|
|
@@ -100,7 +83,7 @@ function TracksContainer(_a) {
|
|
|
100
83
|
if (mouseDragging) {
|
|
101
84
|
window.addEventListener('mousemove', globalMouseMove, true);
|
|
102
85
|
window.addEventListener('mouseup', globalMouseUp, true);
|
|
103
|
-
cleanup =
|
|
86
|
+
cleanup = () => {
|
|
104
87
|
window.removeEventListener('mousemove', globalMouseMove, true);
|
|
105
88
|
window.removeEventListener('mouseup', globalMouseUp, true);
|
|
106
89
|
};
|
|
@@ -109,7 +92,7 @@ function TracksContainer(_a) {
|
|
|
109
92
|
}, [model, mouseDragging, prevX]);
|
|
110
93
|
function mouseDown(event) {
|
|
111
94
|
// check if clicking a draggable element or a resize handle
|
|
112
|
-
|
|
95
|
+
const target = event.target;
|
|
113
96
|
if (target.draggable || target.dataset.resizer) {
|
|
114
97
|
return;
|
|
115
98
|
}
|
|
@@ -128,12 +111,12 @@ function TracksContainer(_a) {
|
|
|
128
111
|
function mouseLeave(event) {
|
|
129
112
|
event.preventDefault();
|
|
130
113
|
}
|
|
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|
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(0, react_1.useEffect)(
|
|
132
|
-
|
|
114
|
+
(0, react_1.useEffect)(() => {
|
|
115
|
+
const curr = ref.current;
|
|
133
116
|
// if ctrl is held down, zoom in with y-scroll
|
|
134
117
|
// else scroll horizontally with x-scroll
|
|
135
118
|
function onWheel(origEvent) {
|
|
136
|
-
|
|
119
|
+
const event = (0, normalize_wheel_1.default)(origEvent);
|
|
137
120
|
if (origEvent.ctrlKey === true) {
|
|
138
121
|
origEvent.preventDefault();
|
|
139
122
|
delta.current += event.pixelY / 500;
|
|
@@ -141,7 +124,7 @@ function TracksContainer(_a) {
|
|
|
141
124
|
if (timeout.current) {
|
|
142
125
|
clearTimeout(timeout.current);
|
|
143
126
|
}
|
|
144
|
-
timeout.current = setTimeout(
|
|
127
|
+
timeout.current = setTimeout(() => {
|
|
145
128
|
model.setScaleFactor(1);
|
|
146
129
|
model.zoomTo(delta.current > 0
|
|
147
130
|
? model.bpPerPx * (1 + delta.current)
|
|
@@ -161,7 +144,7 @@ function TracksContainer(_a) {
|
|
|
161
144
|
// use rAF to make it so multiple event handlers aren't fired per-frame
|
|
162
145
|
// see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
|
|
163
146
|
scheduled.current = true;
|
|
164
|
-
window.requestAnimationFrame(
|
|
147
|
+
window.requestAnimationFrame(() => {
|
|
165
148
|
model.horizontalScroll(delta.current);
|
|
166
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return (react_1.default.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave },
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{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":"
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{"version":3,"file":"TracksContainer.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/TracksContainer.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAA0D;AAC1D,uCAA0C;AAC1C,2CAAqC;AAErC,sEAA4C;AAE5C,0BAAiE;AACjE,8DAAqC;AACrC,0DAAiC;AACjC,4DAAmC;AACnC,8DAAqC;AAErC,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,eAAe,EAAE;QACf,QAAQ,EAAE,UAAU;QACpB,QAAQ,EAAE,QAAQ;KACnB;IACD,MAAM,EAAE;QACN,QAAQ,EAAE,UAAU;QACpB,MAAM,EAAE,CAAC;KACV;CACF,CAAC,CAAA;AAKF,SAAS,eAAe,CAAC,EACvB,QAAQ,EACR,KAAK,GAIN;IACC,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,2EAA2E;IAC3E,yBAAyB;IACzB,MAAM,KAAK,GAAG,IAAA,cAAM,EAAC,CAAC,CAAC,CAAA;IACvB,MAAM,SAAS,GAAG,IAAA,cAAM,EAAC,KAAK,CAAC,CAAA;IAC/B,MAAM,OAAO,GAAG,IAAA,cAAM,GAAS,CAAA;IAC/B,MAAM,GAAG,GAAG,IAAA,cAAM,EAAiB,IAAI,CAAC,CAAA;IACxC,MAAM,KAAK,GAAG,IAAA,cAAM,EAAS,CAAC,CAAC,CAAA;IAE/B,MAAM,CAAC,aAAa,EAAE,gBAAgB,CAAC,GAAG,IAAA,gBAAQ,EAAC,KAAK,CAAC,CAAA;IAEzD,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,IAAI,OAAO,GAAG,GAAG,EAAE,GAAE,CAAC,CAAA;QAEtB,SAAS,eAAe,CAAC,KAAiB;YACxC,KAAK,CAAC,cAAc,EAAE,CAAA;YACtB,MAAM,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YAC3B,MAAM,QAAQ,GAAG,KAAK,GAAG,KAAK,CAAC,OAAO,CAAA;YACtC,IAAI,QAAQ,EAAE;gBACZ,uEAAuE;gBACvE,8EAA8E;gBAC9E,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE;oBACtB,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC,GAAG,EAAE;wBAChC,KAAK,CAAC,gBAAgB,CAAC,CAAC,QAAQ,CAAC,CAAA;wBACjC,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;wBACzB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;oBAC/B,CAAC,CAAC,CAAA;iBACH;aACF;QACH,CAAC;QAED,SAAS,aAAa;YACpB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;YACjB,IAAI,aAAa,EAAE;gBACjB,gBAAgB,CAAC,KAAK,CAAC,CAAA;aACxB;QACH,CAAC;QAED,IAAI,aAAa,EAAE;YACjB,MAAM,CAAC,gBAAgB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;YAC3D,MAAM,CAAC,gBAAgB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YACvD,OAAO,GAAG,GAAG,EAAE;gBACb,MAAM,CAAC,mBAAmB,CAAC,WAAW,EAAE,eAAe,EAAE,IAAI,CAAC,CAAA;gBAC9D,MAAM,CAAC,mBAAmB,CAAC,SAAS,EAAE,aAAa,EAAE,IAAI,CAAC,CAAA;YAC5D,CAAC,CAAA;SACF;QACD,OAAO,OAAO,CAAA;IAChB,CAAC,EAAE,CAAC,KAAK,EAAE,aAAa,EAAE,KAAK,CAAC,CAAC,CAAA;IAEjC,SAAS,SAAS,CAAC,KAAuB;QACxC,2DAA2D;QAC3D,MAAM,MAAM,GAAG,KAAK,CAAC,MAAqB,CAAA;QAC1C,IAAI,MAAM,CAAC,SAAS,IAAI,MAAM,CAAC,OAAO,CAAC,OAAO,EAAE;YAC9C,OAAM;SACP;QAED,qCAAqC;QACrC,IAAI,KAAK,CAAC,MAAM,KAAK,CAAC,EAAE;YACtB,KAAK,CAAC,OAAO,GAAG,KAAK,CAAC,OAAO,CAAA;YAC7B,gBAAgB,CAAC,IAAI,CAAC,CAAA;SACvB;IACH,CAAC;IAED,yEAAyE;IACzE,wEAAwE;IACxE,SAAS,OAAO,CAAC,KAAuB;QACtC,KAAK,CAAC,cAAc,EAAE,CAAA;QACtB,gBAAgB,CAAC,KAAK,CAAC,CAAA;IACzB,CAAC;IAED,SAAS,UAAU,CAAC,KAAuB;QACzC,KAAK,CAAC,cAAc,EAAE,CAAA;IACxB,CAAC;IAED,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,MAAM,IAAI,GAAG,GAAG,CAAC,OAAO,CAAA;QACxB,8CAA8C;QAC9C,yCAAyC;QACzC,SAAS,OAAO,CAAC,SAAqB;YACpC,MAAM,KAAK,GAAG,IAAA,yBAAc,EAAC,SAAS,CAAC,CAAA;YACvC,IAAI,SAAS,CAAC,OAAO,KAAK,IAAI,EAAE;gBAC9B,SAAS,CAAC,cAAc,EAAE,CAAA;gBAC1B,KAAK,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,GAAG,GAAG,CAAA;gBACnC,KAAK,CAAC,cAAc,CAClB,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CAChE,CAAA;gBACD,IAAI,OAAO,CAAC,OAAO,EAAE;oBACnB,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,CAAA;iBAC9B;gBACD,OAAO,CAAC,OAAO,GAAG,UAAU,CAAC,GAAG,EAAE;oBAChC,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,CAAA;oBACvB,KAAK,CAAC,MAAM,CACV,KAAK,CAAC,OAAO,GAAG,CAAC;wBACf,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC;wBACrC,CAAC,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,OAAO,CAAC,CACxC,CAAA;oBACD,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;gBACnB,CAAC,EAAE,GAAG,CAAC,CAAA;aACR;iBAAM;gBACL,gEAAgE;gBAChE,qEAAqE;gBACrE,8BAA8B;gBAC9B,IAAI,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,CAAC,MAAM,CAAC,EAAE;oBACvD,SAAS,CAAC,cAAc,EAAE,CAAA;iBAC3B;gBACD,KAAK,CAAC,OAAO,IAAI,KAAK,CAAC,MAAM,CAAA;gBAC7B,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE;oBACtB,uEAAuE;oBACvE,8EAA8E;oBAC9E,SAAS,CAAC,OAAO,GAAG,IAAI,CAAA;oBACxB,MAAM,CAAC,qBAAqB,CAAC,GAAG,EAAE;wBAChC,KAAK,CAAC,gBAAgB,CAAC,KAAK,CAAC,OAAO,CAAC,CAAA;wBACrC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAA;wBACjB,SAAS,CAAC,OAAO,GAAG,KAAK,CAAA;oBAC3B,CAAC,CAAC,CAAA;iBACH;aACF;QACH,CAAC;QACD,IAAI,IAAI,EAAE;YACR,IAAI,CAAC,gBAAgB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;YACvC,OAAO,GAAG,EAAE;gBACV,IAAI,CAAC,mBAAmB,CAAC,OAAO,EAAE,OAAO,CAAC,CAAA;YAC5C,CAAC,CAAA;SACF;QACD,OAAO,GAAG,EAAE,GAAE,CAAC,CAAA;IACjB,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAA;IAEX,OAAO,CACL,uCACE,GAAG,EAAE,GAAG,iBACI,gBAAgB,EAC5B,SAAS,EAAE,OAAO,CAAC,eAAe,EAClC,WAAW,EAAE,SAAS,EACtB,SAAS,EAAE,OAAO,EAClB,YAAY,EAAE,UAAU;QAEvB,KAAK,CAAC,aAAa,CAAC,CAAC,CAAC,8BAAC,mBAAS,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QACxD,KAAK,CAAC,cAAc,CAAC,CAAC,CAAC,8BAAC,oBAAU,IAAC,KAAK,EAAE,KAAK,GAAI,CAAC,CAAC,CAAC,IAAI;QAE3D,8BAAC,oBAAU,IACT,KAAK,EAAE,KAAK,EACZ,gBAAgB,EACd,8BAAC,kBAAQ,IACP,KAAK,EAAE,KAAK,EACZ,KAAK,EAAE,EAAE,MAAM,EAAE,oBAAgB,EAAE,SAAS,EAAE,YAAY,EAAE,GAC5D,GAEJ;QACD,QAAQ,CACL,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,eAAe,CAAC,CAAA"}
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{"version":3,"file":"ZoomControls.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/ZoomControls.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,+CAAkD;AAClD,2CAAqC;AACrC,4CAAkD;AAClD,uCAA0C;AAC1C,wEAA+C;AAC/C,0EAAiD;AAGjD,MAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC;IAC7B,SAAS,EAAE;QACT,OAAO,EAAE,MAAM;QACf,aAAa,EAAE,KAAK;QACpB,UAAU,EAAE,QAAQ;KACrB;IACD,MAAM,EAAE;QACN,KAAK,EAAE,EAAE;KACV;CACF,CAAC,CAAA;AAEF,SAAS,YAAY,CAAC,EAAE,KAAK,EAAoC;IAC/D,MAAM,EAAE,OAAO,EAAE,GAAG,SAAS,EAAE,CAAA;IAC/B,MAAM,EAAE,UAAU,EAAE,UAAU,EAAE,OAAO,EAAE,WAAW,EAAE,GAAG,KAAK,CAAA;IAC9D,MAAM,CAAC,KAAK,EAAE,QAAQ,CAAC,GAAG,IAAA,gBAAQ,EAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IAC7D,IAAA,iBAAS,EAAC,GAAG,EAAE;QACb,QAAQ,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,GAAG,CAAC,CAAA;IACrC,CAAC,EAAE,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC,CAAA;IAEvB,OAAO,CACL,uCAAK,SAAS,EAAE,OAAO,CAAC,SAAS;QAC/B,8BAAC,qBAAU,mBACG,UAAU,EACtB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,OAAO,GAAG,CAAC,CAAC,EACtC,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,KAAK,EAAC,WAAW,EACjB,IAAI,EAAC,OAAO;YAEZ,8BAAC,iBAAO,OAAG,CACA;QAEb,8BAAC,iBAAM,IACL,IAAI,EAAC,OAAO,EACZ,SAAS,EAAE,OAAO,CAAC,MAAM,EACzB,KAAK,EAAE,KAAK,EACZ,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,GAAG,EAAE,CAAC,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,GAAG,GAAG,EACjC,QAAQ,EAAE,CAAC,CAAC,EAAE,GAAG,EAAE,EAAE,CAAC,QAAQ,CAAC,GAAa,CAAC,EAC7C,iBAAiB,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,IAAI,CAAC,CAAC,KAAK,GAAG,GAAG,CAAC,CAAC,EAC1D,QAAQ,EAAE,WAAW,KAAK,CAAC,GAC3B;QACF,8BAAC,qBAAU,mBACG,SAAS,EACrB,OAAO,EAAE,GAAG,EAAE,CAAC,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,OAAO,GAAG,CAAC,CAAC,EAC5C,QAAQ,EAAE,OAAO,IAAI,UAAU,GAAG,MAAM,IAAI,WAAW,KAAK,CAAC,EAC7D,KAAK,EAAC,WAAW,EACjB,IAAI,EAAC,OAAO;YAEZ,8BAAC,gBAAM,OAAG,CACC,CACT,CACP,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,YAAY,CAAC,CAAA"}
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case 0: case 1: t = op; break;
|
|
22
|
-
case 4: _.label++; return { value: op[1], done: false };
|
|
23
|
-
case 5: _.label++; y = op[1]; op = [0]; continue;
|
|
24
|
-
case 7: op = _.ops.pop(); _.trys.pop(); continue;
|
|
25
|
-
default:
|
|
26
|
-
if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
|
|
27
|
-
if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
|
|
28
|
-
if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
|
|
29
|
-
if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
|
|
30
|
-
if (t[2]) _.ops.pop();
|
|
31
|
-
_.trys.pop(); continue;
|
|
32
|
-
}
|
|
33
|
-
op = body.call(thisArg, _);
|
|
34
|
-
} catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
|
|
35
|
-
if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
|
|
36
|
-
}
|
|
37
|
-
};
|
|
38
|
-
var __read = (this && this.__read) || function (o, n) {
|
|
39
|
-
var m = typeof Symbol === "function" && o[Symbol.iterator];
|
|
40
|
-
if (!m) return o;
|
|
41
|
-
var i = m.call(o), r, ar = [], e;
|
|
42
|
-
try {
|
|
43
|
-
while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
|
|
44
|
-
}
|
|
45
|
-
catch (error) { e = { error: error }; }
|
|
46
|
-
finally {
|
|
47
|
-
try {
|
|
48
|
-
if (r && !r.done && (m = i["return"])) m.call(i);
|
|
49
|
-
}
|
|
50
|
-
finally { if (e) throw e.error; }
|
|
51
|
-
}
|
|
52
|
-
return ar;
|
|
53
|
-
};
|
|
54
|
-
var __spreadArray = (this && this.__spreadArray) || function (to, from, pack) {
|
|
55
|
-
if (pack || arguments.length === 2) for (var i = 0, l = from.length, ar; i < l; i++) {
|
|
56
|
-
if (ar || !(i in from)) {
|
|
57
|
-
if (!ar) ar = Array.prototype.slice.call(from, 0, i);
|
|
58
|
-
ar[i] = from[i];
|
|
59
|
-
}
|
|
60
|
-
}
|
|
61
|
-
return to.concat(ar || Array.prototype.slice.call(from));
|
|
62
|
-
};
|
|
63
2
|
var __importDefault = (this && this.__importDefault) || function (mod) {
|
|
64
3
|
return (mod && mod.__esModule) ? mod : { "default": mod };
|
|
65
4
|
};
|
|
66
5
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
67
|
-
exports.fetchResults = exports.dedupe = void 0;
|
|
68
|
-
|
|
69
|
-
function dedupe(results, cb) {
|
|
70
|
-
|
|
71
|
-
return results.filter(function (elt, idx, self) { return idx === self.findIndex(function (t) { return cb(t) === cb(elt); }); });
|
|
6
|
+
exports.splitLast = exports.fetchResults = exports.dedupe = void 0;
|
|
7
|
+
const BaseResults_1 = __importDefault(require("@jbrowse/core/TextSearch/BaseResults"));
|
|
8
|
+
function dedupe(results = [], cb) {
|
|
9
|
+
return results.filter((elt, idx, self) => idx === self.findIndex(t => cb(t) === cb(elt)));
|
|
72
10
|
}
|
|
73
11
|
exports.dedupe = dedupe;
|
|
74
|
-
function fetchResults(
|
|
75
|
-
var
|
|
76
|
-
|
|
77
|
-
|
|
78
|
-
|
|
79
|
-
|
|
80
|
-
|
|
81
|
-
|
|
82
|
-
|
|
83
|
-
|
|
84
|
-
|
|
85
|
-
return [4 /*yield*/, (textSearchManager === null || textSearchManager === void 0 ? void 0 : textSearchManager.search({
|
|
86
|
-
queryString: queryString,
|
|
87
|
-
searchType: searchType,
|
|
88
|
-
}, searchScope, rankSearchResults))];
|
|
89
|
-
case 1:
|
|
90
|
-
textSearchResults = _c.sent();
|
|
91
|
-
refNameResults = (_b = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _b === void 0 ? void 0 : _b.filter(function (ref) { return ref.toLowerCase().startsWith(queryString.toLowerCase()); }).slice(0, 10).map(function (r) { return new BaseResults_1.default({ label: r }); });
|
|
92
|
-
return [2 /*return*/, dedupe(__spreadArray(__spreadArray([], __read((refNameResults || [])), false), __read((textSearchResults || [])), false), function (elt) { return elt.getId(); })];
|
|
93
|
-
}
|
|
94
|
-
});
|
|
95
|
-
});
|
|
12
|
+
async function fetchResults({ queryString, searchType, searchScope, rankSearchResults, textSearchManager, assembly, }) {
|
|
13
|
+
var _a;
|
|
14
|
+
if (!textSearchManager) {
|
|
15
|
+
console.warn('No text search manager');
|
|
16
|
+
}
|
|
17
|
+
const textSearchResults = await (textSearchManager === null || textSearchManager === void 0 ? void 0 : textSearchManager.search({
|
|
18
|
+
queryString,
|
|
19
|
+
searchType,
|
|
20
|
+
}, searchScope, rankSearchResults));
|
|
21
|
+
const refNameResults = (_a = assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) === null || _a === void 0 ? void 0 : _a.filter(ref => ref.toLowerCase().startsWith(queryString.toLowerCase())).slice(0, 10).map(r => new BaseResults_1.default({ label: r }));
|
|
22
|
+
return dedupe([...(refNameResults || []), ...(textSearchResults || [])], elt => elt.getId());
|
|
96
23
|
}
|
|
97
24
|
exports.fetchResults = fetchResults;
|
|
25
|
+
// splits on the last instance of a character
|
|
26
|
+
function splitLast(str, split) {
|
|
27
|
+
const lastIndex = str.lastIndexOf(split);
|
|
28
|
+
if (lastIndex === -1) {
|
|
29
|
+
return [str, ''];
|
|
30
|
+
}
|
|
31
|
+
else {
|
|
32
|
+
const before = str.slice(0, lastIndex);
|
|
33
|
+
const after = str.slice(lastIndex + 1);
|
|
34
|
+
return [before, after];
|
|
35
|
+
}
|
|
36
|
+
}
|
|
37
|
+
exports.splitLast = splitLast;
|
|
98
38
|
//# sourceMappingURL=util.js.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/util.ts"],"names":[],"mappings":"
|
|
1
|
+
{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/util.ts"],"names":[],"mappings":";;;;;;AAEA,uFAA6D;AAI7D,SAAgB,MAAM,CACpB,UAAwB,EAAE,EAC1B,EAAkC;IAElC,OAAO,OAAO,CAAC,MAAM,CACnB,CAAC,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,EAAE,CAAC,GAAG,KAAK,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,GAAG,CAAC,CAAC,CACnE,CAAA;AACH,CAAC;AAPD,wBAOC;AAEM,KAAK,UAAU,YAAY,CAAC,EACjC,WAAW,EACX,UAAU,EACV,WAAW,EACX,iBAAiB,EACjB,iBAAiB,EACjB,QAAQ,GAQT;;IACC,IAAI,CAAC,iBAAiB,EAAE;QACtB,OAAO,CAAC,IAAI,CAAC,wBAAwB,CAAC,CAAA;KACvC;IAED,MAAM,iBAAiB,GAAG,MAAM,CAAA,iBAAiB,aAAjB,iBAAiB,uBAAjB,iBAAiB,CAAE,MAAM,CACvD;QACE,WAAW;QACX,UAAU;KACX,EACD,WAAW,EACX,iBAAiB,CAClB,CAAA,CAAA;IAED,MAAM,cAAc,GAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,0CACxC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,WAAW,EAAE,CAAC,UAAU,CAAC,WAAW,CAAC,WAAW,EAAE,CAAC,EACtE,KAAK,CAAC,CAAC,EAAE,EAAE,EACX,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,IAAI,qBAAU,CAAC,EAAE,KAAK,EAAE,CAAC,EAAE,CAAC,CAAC,CAAA;IAEzC,OAAO,MAAM,CACX,CAAC,GAAG,CAAC,cAAc,IAAI,EAAE,CAAC,EAAE,GAAG,CAAC,iBAAiB,IAAI,EAAE,CAAC,CAAC,EACzD,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,KAAK,EAAE,CACnB,CAAA;AACH,CAAC;AArCD,oCAqCC;AAED,6CAA6C;AAC7C,SAAgB,SAAS,CAAC,GAAW,EAAE,KAAa;IAClD,MAAM,SAAS,GAAG,GAAG,CAAC,WAAW,CAAC,KAAK,CAAC,CAAA;IACxC,IAAI,SAAS,KAAK,CAAC,CAAC,EAAE;QACpB,OAAO,CAAC,GAAG,EAAE,EAAE,CAAC,CAAA;KACjB;SAAM;QACL,MAAM,MAAM,GAAG,GAAG,CAAC,KAAK,CAAC,CAAC,EAAE,SAAS,CAAC,CAAA;QACtC,MAAM,KAAK,GAAG,GAAG,CAAC,KAAK,CAAC,SAAS,GAAG,CAAC,CAAC,CAAA;QACtC,OAAO,CAAC,MAAM,EAAE,KAAK,CAAC,CAAA;KACvB;AACH,CAAC;AATD,8BASC"}
|