@jbrowse/plugin-linear-genome-view 1.7.9 → 2.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (272) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +1 -5
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +118 -226
  3. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -0
  4. package/dist/BaseLinearDisplay/components/Block.js +53 -74
  5. package/dist/BaseLinearDisplay/components/Block.js.map +1 -0
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +11 -1
  7. package/dist/BaseLinearDisplay/components/LinearBlocks.js +64 -103
  8. package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +1 -0
  9. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +145 -175
  10. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -0
  11. package/dist/BaseLinearDisplay/components/Tooltip.d.ts +8 -0
  12. package/dist/BaseLinearDisplay/components/Tooltip.js +118 -0
  13. package/dist/BaseLinearDisplay/components/Tooltip.js.map +1 -0
  14. package/dist/BaseLinearDisplay/index.js +13 -40
  15. package/dist/BaseLinearDisplay/index.js.map +1 -0
  16. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +20 -15
  17. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +605 -683
  18. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -0
  19. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +15 -22
  20. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -0
  21. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +7 -8
  22. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +266 -312
  23. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -0
  24. package/dist/LinearBareDisplay/configSchema.js +11 -17
  25. package/dist/LinearBareDisplay/configSchema.js.map +1 -0
  26. package/dist/LinearBareDisplay/index.js +7 -20
  27. package/dist/LinearBareDisplay/index.js.map +1 -0
  28. package/dist/LinearBareDisplay/model.d.ts +16 -14
  29. package/dist/LinearBareDisplay/model.js +36 -42
  30. package/dist/LinearBareDisplay/model.js.map +1 -0
  31. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +1 -1
  32. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +76 -85
  33. package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -0
  34. package/dist/LinearBasicDisplay/configSchema.js +15 -23
  35. package/dist/LinearBasicDisplay/configSchema.js.map +1 -0
  36. package/dist/LinearBasicDisplay/index.js +10 -22
  37. package/dist/LinearBasicDisplay/index.js.map +1 -0
  38. package/dist/LinearBasicDisplay/model.d.ts +20 -15
  39. package/dist/LinearBasicDisplay/model.js +180 -159
  40. package/dist/LinearBasicDisplay/model.js.map +1 -0
  41. package/dist/LinearGenomeView/components/CenterLine.d.ts +2 -8
  42. package/dist/LinearGenomeView/components/CenterLine.js +60 -74
  43. package/dist/LinearGenomeView/components/CenterLine.js.map +1 -0
  44. package/dist/LinearGenomeView/components/ExportSvgDialog.js +141 -141
  45. package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -0
  46. package/dist/LinearGenomeView/components/Header.js +70 -123
  47. package/dist/LinearGenomeView/components/Header.js.map +1 -0
  48. package/dist/LinearGenomeView/components/HelpDialog.d.ts +0 -1
  49. package/dist/LinearGenomeView/components/HelpDialog.js +62 -45
  50. package/dist/LinearGenomeView/components/HelpDialog.js.map +1 -0
  51. package/dist/LinearGenomeView/components/ImportForm.js +223 -320
  52. package/dist/LinearGenomeView/components/ImportForm.js.map +1 -0
  53. package/dist/LinearGenomeView/components/LinearGenomeView.js +64 -120
  54. package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -0
  55. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +198 -337
  56. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -0
  57. package/dist/LinearGenomeView/components/MiniControls.js +64 -78
  58. package/dist/LinearGenomeView/components/MiniControls.js.map +1 -0
  59. package/dist/LinearGenomeView/components/OverviewRubberBand.js +226 -293
  60. package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -0
  61. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +24 -8
  62. package/dist/LinearGenomeView/components/OverviewScaleBar.js +277 -365
  63. package/dist/LinearGenomeView/components/OverviewScaleBar.js.map +1 -0
  64. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +1 -1
  65. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +237 -324
  66. package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -0
  67. package/dist/LinearGenomeView/components/RubberBand.js +229 -296
  68. package/dist/LinearGenomeView/components/RubberBand.js.map +1 -0
  69. package/dist/LinearGenomeView/components/Ruler.js +45 -90
  70. package/dist/LinearGenomeView/components/Ruler.js.map +1 -0
  71. package/dist/LinearGenomeView/components/ScaleBar.d.ts +8 -399
  72. package/dist/LinearGenomeView/components/ScaleBar.js +121 -167
  73. package/dist/LinearGenomeView/components/ScaleBar.js.map +1 -0
  74. package/dist/LinearGenomeView/components/SearchBox.js +158 -205
  75. package/dist/LinearGenomeView/components/SearchBox.js.map +1 -0
  76. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -1
  77. package/dist/LinearGenomeView/components/SearchResultsDialog.js +105 -150
  78. package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -0
  79. package/dist/LinearGenomeView/components/SequenceDialog.js +219 -272
  80. package/dist/LinearGenomeView/components/SequenceDialog.js.map +1 -0
  81. package/dist/LinearGenomeView/components/TrackContainer.js +116 -156
  82. package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -0
  83. package/dist/LinearGenomeView/components/TrackLabel.d.ts +6 -42
  84. package/dist/LinearGenomeView/components/TrackLabel.js +115 -150
  85. package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -0
  86. package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  87. package/dist/LinearGenomeView/components/TracksContainer.js +172 -199
  88. package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -0
  89. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +2 -3
  90. package/dist/LinearGenomeView/components/VerticalGuides.js +66 -104
  91. package/dist/LinearGenomeView/components/VerticalGuides.js.map +1 -0
  92. package/dist/LinearGenomeView/components/ZoomControls.js +72 -87
  93. package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -0
  94. package/dist/LinearGenomeView/components/util.d.ts +12 -0
  95. package/dist/LinearGenomeView/components/util.js +95 -13
  96. package/dist/LinearGenomeView/components/util.js.map +1 -0
  97. package/dist/LinearGenomeView/index.d.ts +6 -11
  98. package/dist/LinearGenomeView/index.js +1163 -1387
  99. package/dist/LinearGenomeView/index.js.map +1 -0
  100. package/dist/LinearGenomeView/util.js +76 -83
  101. package/dist/LinearGenomeView/util.js.map +1 -0
  102. package/dist/index.d.ts +101 -51
  103. package/dist/index.js +225 -284
  104. package/dist/index.js.map +1 -0
  105. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +9 -0
  106. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +68 -0
  107. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -0
  108. package/esm/BaseLinearDisplay/components/Block.d.ts +15 -0
  109. package/esm/BaseLinearDisplay/components/Block.js +46 -0
  110. package/esm/BaseLinearDisplay/components/Block.js.map +1 -0
  111. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +22 -0
  112. package/esm/BaseLinearDisplay/components/LinearBlocks.js +62 -0
  113. package/esm/BaseLinearDisplay/components/LinearBlocks.js.map +1 -0
  114. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -0
  115. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +113 -0
  116. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -0
  117. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +8 -0
  118. package/esm/BaseLinearDisplay/components/Tooltip.js +64 -0
  119. package/esm/BaseLinearDisplay/components/Tooltip.js.map +1 -0
  120. package/esm/BaseLinearDisplay/index.d.ts +5 -0
  121. package/esm/BaseLinearDisplay/index.js +4 -0
  122. package/esm/BaseLinearDisplay/index.js.map +1 -0
  123. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +232 -0
  124. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +541 -0
  125. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -0
  126. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -0
  127. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +14 -0
  128. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -0
  129. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -0
  130. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +225 -0
  131. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -0
  132. package/esm/LinearBareDisplay/configSchema.d.ts +2 -0
  133. package/esm/LinearBareDisplay/configSchema.js +9 -0
  134. package/esm/LinearBareDisplay/configSchema.js.map +1 -0
  135. package/esm/LinearBareDisplay/index.d.ts +2 -0
  136. package/esm/LinearBareDisplay/index.js +3 -0
  137. package/esm/LinearBareDisplay/index.js.map +1 -0
  138. package/esm/LinearBareDisplay/model.d.ts +194 -0
  139. package/esm/LinearBareDisplay/model.js +28 -0
  140. package/esm/LinearBareDisplay/model.js.map +1 -0
  141. package/esm/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -0
  142. package/esm/LinearBasicDisplay/components/SetMaxHeight.js +40 -0
  143. package/esm/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -0
  144. package/esm/LinearBasicDisplay/configSchema.d.ts +2 -0
  145. package/esm/LinearBasicDisplay/configSchema.js +14 -0
  146. package/esm/LinearBasicDisplay/configSchema.js.map +1 -0
  147. package/esm/LinearBasicDisplay/index.d.ts +2 -0
  148. package/esm/LinearBasicDisplay/index.js +3 -0
  149. package/esm/LinearBasicDisplay/index.js.map +1 -0
  150. package/esm/LinearBasicDisplay/model.d.ts +218 -0
  151. package/esm/LinearBasicDisplay/model.js +127 -0
  152. package/esm/LinearBasicDisplay/model.js.map +1 -0
  153. package/esm/LinearGenomeView/components/CenterLine.d.ts +8 -0
  154. package/esm/LinearGenomeView/components/CenterLine.js +40 -0
  155. package/esm/LinearGenomeView/components/CenterLine.js.map +1 -0
  156. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -0
  157. package/esm/LinearGenomeView/components/ExportSvgDialog.js +52 -0
  158. package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +1 -0
  159. package/esm/LinearGenomeView/components/Header.d.ts +7 -0
  160. package/esm/LinearGenomeView/components/Header.js +81 -0
  161. package/esm/LinearGenomeView/components/Header.js.map +1 -0
  162. package/esm/LinearGenomeView/components/HelpDialog.d.ts +4 -0
  163. package/esm/LinearGenomeView/components/HelpDialog.js +58 -0
  164. package/esm/LinearGenomeView/components/HelpDialog.js.map +1 -0
  165. package/esm/LinearGenomeView/components/ImportForm.d.ts +7 -0
  166. package/esm/LinearGenomeView/components/ImportForm.js +141 -0
  167. package/esm/LinearGenomeView/components/ImportForm.js.map +1 -0
  168. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +7 -0
  169. package/esm/LinearGenomeView/components/LinearGenomeView.js +67 -0
  170. package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -0
  171. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -0
  172. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +132 -0
  173. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -0
  174. package/esm/LinearGenomeView/components/MiniControls.d.ts +6 -0
  175. package/esm/LinearGenomeView/components/MiniControls.js +25 -0
  176. package/esm/LinearGenomeView/components/MiniControls.js.map +1 -0
  177. package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -0
  178. package/esm/LinearGenomeView/components/OverviewRubberBand.js +194 -0
  179. package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -0
  180. package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +148 -0
  181. package/esm/LinearGenomeView/components/OverviewScaleBar.js +287 -0
  182. package/esm/LinearGenomeView/components/OverviewScaleBar.js.map +1 -0
  183. package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +22 -0
  184. package/esm/LinearGenomeView/components/RefNameAutocomplete.js +136 -0
  185. package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -0
  186. package/esm/LinearGenomeView/components/RubberBand.d.ts +9 -0
  187. package/esm/LinearGenomeView/components/RubberBand.js +198 -0
  188. package/esm/LinearGenomeView/components/RubberBand.js.map +1 -0
  189. package/esm/LinearGenomeView/components/Ruler.d.ts +27 -0
  190. package/esm/LinearGenomeView/components/Ruler.js +50 -0
  191. package/esm/LinearGenomeView/components/Ruler.js.map +1 -0
  192. package/esm/LinearGenomeView/components/ScaleBar.d.ts +10 -0
  193. package/esm/LinearGenomeView/components/ScaleBar.js +112 -0
  194. package/esm/LinearGenomeView/components/ScaleBar.js.map +1 -0
  195. package/esm/LinearGenomeView/components/SearchBox.d.ts +8 -0
  196. package/esm/LinearGenomeView/components/SearchBox.js +94 -0
  197. package/esm/LinearGenomeView/components/SearchBox.js.map +1 -0
  198. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +7 -0
  199. package/esm/LinearGenomeView/components/SearchResultsDialog.js +107 -0
  200. package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +1 -0
  201. package/esm/LinearGenomeView/components/SequenceDialog.d.ts +8 -0
  202. package/esm/LinearGenomeView/components/SequenceDialog.js +147 -0
  203. package/esm/LinearGenomeView/components/SequenceDialog.js.map +1 -0
  204. package/esm/LinearGenomeView/components/TrackContainer.d.ts +9 -0
  205. package/esm/LinearGenomeView/components/TrackContainer.js +109 -0
  206. package/esm/LinearGenomeView/components/TrackContainer.js.map +1 -0
  207. package/esm/LinearGenomeView/components/TrackLabel.d.ts +8 -0
  208. package/esm/LinearGenomeView/components/TrackLabel.js +89 -0
  209. package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -0
  210. package/esm/LinearGenomeView/components/TracksContainer.d.ts +10 -0
  211. package/esm/LinearGenomeView/components/TracksContainer.js +142 -0
  212. package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -0
  213. package/esm/LinearGenomeView/components/VerticalGuides.d.ts +8 -0
  214. package/esm/LinearGenomeView/components/VerticalGuides.js +71 -0
  215. package/esm/LinearGenomeView/components/VerticalGuides.js.map +1 -0
  216. package/esm/LinearGenomeView/components/ZoomControls.d.ts +7 -0
  217. package/esm/LinearGenomeView/components/ZoomControls.js +32 -0
  218. package/esm/LinearGenomeView/components/ZoomControls.js.map +1 -0
  219. package/esm/LinearGenomeView/components/util.d.ts +14 -0
  220. package/esm/LinearGenomeView/components/util.js +17 -0
  221. package/esm/LinearGenomeView/components/util.js.map +1 -0
  222. package/esm/LinearGenomeView/index.d.ts +288 -0
  223. package/esm/LinearGenomeView/index.js +1124 -0
  224. package/esm/LinearGenomeView/index.js.map +1 -0
  225. package/esm/LinearGenomeView/util.d.ts +14 -0
  226. package/esm/LinearGenomeView/util.js +62 -0
  227. package/esm/LinearGenomeView/util.js.map +1 -0
  228. package/esm/index.d.ts +615 -0
  229. package/esm/index.js +127 -0
  230. package/esm/index.js.map +1 -0
  231. package/package.json +21 -13
  232. package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +6 -90
  233. package/src/BaseLinearDisplay/components/Block.tsx +5 -5
  234. package/src/BaseLinearDisplay/components/LinearBlocks.tsx +4 -4
  235. package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +7 -8
  236. package/src/BaseLinearDisplay/components/Tooltip.tsx +107 -0
  237. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +16 -8
  238. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +1 -1
  239. package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +10 -7
  240. package/src/LinearBasicDisplay/model.ts +21 -15
  241. package/src/LinearGenomeView/components/CenterLine.tsx +6 -11
  242. package/src/LinearGenomeView/components/ExportSvgDialog.tsx +5 -5
  243. package/src/LinearGenomeView/components/Header.tsx +12 -16
  244. package/src/LinearGenomeView/components/HelpDialog.tsx +10 -9
  245. package/src/LinearGenomeView/components/ImportForm.tsx +24 -37
  246. package/src/LinearGenomeView/components/LinearGenomeView.test.js +18 -8
  247. package/src/LinearGenomeView/components/LinearGenomeView.tsx +20 -13
  248. package/src/LinearGenomeView/components/MiniControls.tsx +29 -40
  249. package/src/LinearGenomeView/components/OverviewRubberBand.tsx +6 -10
  250. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +103 -93
  251. package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +13 -44
  252. package/src/LinearGenomeView/components/RubberBand.tsx +12 -17
  253. package/src/LinearGenomeView/components/Ruler.tsx +5 -11
  254. package/src/LinearGenomeView/components/ScaleBar.tsx +27 -34
  255. package/src/LinearGenomeView/components/SearchBox.tsx +22 -32
  256. package/src/LinearGenomeView/components/SearchResultsDialog.tsx +7 -7
  257. package/src/LinearGenomeView/components/SequenceDialog.tsx +9 -9
  258. package/src/LinearGenomeView/components/TrackContainer.tsx +12 -12
  259. package/src/LinearGenomeView/components/TrackLabel.tsx +37 -50
  260. package/src/LinearGenomeView/components/TracksContainer.tsx +8 -13
  261. package/src/LinearGenomeView/components/VerticalGuides.tsx +9 -11
  262. package/src/LinearGenomeView/components/ZoomControls.tsx +12 -13
  263. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +504 -568
  264. package/src/LinearGenomeView/components/util.ts +43 -0
  265. package/src/LinearGenomeView/index.test.ts +21 -5
  266. package/src/LinearGenomeView/index.tsx +101 -88
  267. package/src/index.ts +36 -31
  268. package/dist/LinearBareDisplay/index.test.js +0 -33
  269. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +0 -234
  270. package/dist/LinearGenomeView/components/ScaleBar.test.js +0 -180
  271. package/dist/LinearGenomeView/index.test.js +0 -1170
  272. package/dist/LinearGenomeView/util.test.js +0 -78
@@ -1,78 +0,0 @@
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- "use strict";
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-
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- var _util = require("./util");
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-
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- describe('tick calculation', function () {
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- test('one', function () {
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- var result = Array.from((0, _util.makeTicks)(0, 10, 0.05));
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- expect(result).toEqual([{
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- type: 'major',
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- base: -1,
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- index: 0
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- }, {
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- type: 'minor',
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- base: 0,
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- index: 1
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- }, {
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- type: 'minor',
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- base: 1,
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- index: 2
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- }, {
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- type: 'minor',
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- base: 2,
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- index: 3
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- }, {
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- type: 'minor',
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- base: 3,
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- index: 4
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- }, {
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- type: 'minor',
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- base: 4,
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- index: 5
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- }, {
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- type: 'minor',
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- base: 5,
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- index: 6
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- }, {
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- type: 'minor',
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- base: 6,
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- index: 7
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- }, {
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- type: 'minor',
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- base: 7,
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- index: 8
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- }, {
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- type: 'minor',
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- base: 8,
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- index: 9
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- }, {
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- type: 'major',
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- base: 9,
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- index: 10
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- }, {
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- type: 'minor',
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- base: 10,
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- index: 11
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- }]);
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- });
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- test('two', function () {
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- var result = Array.from((0, _util.makeTicks)(0, 50, 1));
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- expect(result).toEqual([{
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- type: 'major',
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- base: -1,
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- index: 0
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- }, {
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- type: 'minor',
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- base: 19,
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- index: 1
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- }, {
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- type: 'minor',
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- base: 39,
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- index: 2
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- }, {
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- type: 'minor',
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- base: 59,
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- index: 3
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- }]);
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- });
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- });