@jbrowse/plugin-linear-genome-view 1.7.9 → 2.0.0

package/dist/LinearGenomeView/components/TrackLabel.js.map

@@ -0,0 +1 @@
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package/dist/LinearGenomeView/components/TracksContainer.d.ts

@@ -1,5 +1,5 @@
-import { Instance } from 'mobx-state-tree';
 import React from 'react';
+import { Instance } from 'mobx-state-tree';
 import { LinearGenomeViewStateModel } from '..';
 declare type LGV = Instance<LinearGenomeViewStateModel>;
 declare function TracksContainer({ children, model, }: {

package/dist/LinearGenomeView/components/TracksContainer.js

@@ -1,214 +1,187 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-var _typeof = require("@babel/runtime/helpers/typeof");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
 });
-exports.default = void 0;
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _styles = require("@material-ui/core/styles");
-
-var _mobxReact = require("mobx-react");
-
-var _react = _interopRequireWildcard(require("react"));
-
-var _normalizeWheel = _interopRequireDefault(require("normalize-wheel"));
-
-var _ = require("..");
-
-var _RubberBand = _interopRequireDefault(require("./RubberBand"));
-
-var _ScaleBar = _interopRequireDefault(require("./ScaleBar"));
-
-var _VerticalGuides = _interopRequireDefault(require("./VerticalGuides"));
-
-var _CenterLine = _interopRequireDefault(require("./CenterLine"));
-
-function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
-
-function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { default: obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj.default = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
-
-var useStyles = (0, _styles.makeStyles)(function (theme) {
-  return {
+var __importStar = (this && this.__importStar) || function (mod) {
+    if (mod && mod.__esModule) return mod;
+    var result = {};
+    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
+    __setModuleDefault(result, mod);
+    return result;
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importStar(require("react"));
+var mui_1 = require("tss-react/mui");
+var mobx_react_1 = require("mobx-react");
+var normalize_wheel_1 = __importDefault(require("normalize-wheel"));
+var __1 = require("..");
+var RubberBand_1 = __importDefault(require("./RubberBand"));
+var ScaleBar_1 = __importDefault(require("./ScaleBar"));
+var VerticalGuides_1 = __importDefault(require("./VerticalGuides"));
+var CenterLine_1 = __importDefault(require("./CenterLine"));
+var useStyles = (0, mui_1.makeStyles)()({
     tracksContainer: {
-      position: 'relative',
-      borderRadius: theme.shape.borderRadius,
-      overflow: 'hidden'
+        position: 'relative',
+        overflow: 'hidden',
     },
     spacer: {
-      position: 'relative',
-      height: _.RESIZE_HANDLE_HEIGHT
-    }
-  };
+        position: 'relative',
+        height: 3,
+    },
 });
-
-function TracksContainer(_ref) {
-  var children = _ref.children,
-      model = _ref.model;
-  var classes = useStyles(); // refs are to store these variables to avoid repeated rerenders associated
-  // with useState/setState
-
-  var delta = (0, _react.useRef)(0);
-  var scheduled = (0, _react.useRef)(false);
-  var timeout = (0, _react.useRef)();
-  var ref = (0, _react.useRef)(null);
-  var prevX = (0, _react.useRef)(0);
-
-  var _useState = (0, _react.useState)(false),
-      _useState2 = (0, _slicedToArray2.default)(_useState, 2),
-      mouseDragging = _useState2[0],
-      setMouseDragging = _useState2[1];
-
-  (0, _react.useEffect)(function () {
-    var cleanup = function cleanup() {};
-
-    function globalMouseMove(event) {
-      event.preventDefault();
-      var currX = event.clientX;
-      var distance = currX - prevX.current;
-
-      if (distance) {
-        // use rAF to make it so multiple event handlers aren't fired per-frame
-        // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
-        if (!scheduled.current) {
-          scheduled.current = true;
-          window.requestAnimationFrame(function () {
-            model.horizontalScroll(-distance);
-            scheduled.current = false;
+function TracksContainer(_a) {
+    var children = _a.children, model = _a.model;
+    var classes = useStyles().classes;
+    // refs are to store these variables to avoid repeated rerenders associated
+    // with useState/setState
+    var delta = (0, react_1.useRef)(0);
+    var scheduled = (0, react_1.useRef)(false);
+    var timeout = (0, react_1.useRef)();
+    var ref = (0, react_1.useRef)(null);
+    var prevX = (0, react_1.useRef)(0);
+    var _b = __read((0, react_1.useState)(false), 2), mouseDragging = _b[0], setMouseDragging = _b[1];
+    (0, react_1.useEffect)(function () {
+        var cleanup = function () { };
+        function globalMouseMove(event) {
+            event.preventDefault();
+            var currX = event.clientX;
+            var distance = currX - prevX.current;
+            if (distance) {
+                // use rAF to make it so multiple event handlers aren't fired per-frame
+                // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
+                if (!scheduled.current) {
+                    scheduled.current = true;
+                    window.requestAnimationFrame(function () {
+                        model.horizontalScroll(-distance);
+                        scheduled.current = false;
+                        prevX.current = event.clientX;
+                    });
+                }
+            }
+        }
+        function globalMouseUp() {
+            prevX.current = 0;
+            if (mouseDragging) {
+                setMouseDragging(false);
+            }
+        }
+        if (mouseDragging) {
+            window.addEventListener('mousemove', globalMouseMove, true);
+            window.addEventListener('mouseup', globalMouseUp, true);
+            cleanup = function () {
+                window.removeEventListener('mousemove', globalMouseMove, true);
+                window.removeEventListener('mouseup', globalMouseUp, true);
+            };
+        }
+        return cleanup;
+    }, [model, mouseDragging, prevX]);
+    function mouseDown(event) {
+        // check if clicking a draggable element or a resize handle
+        var target = event.target;
+        if (target.draggable || target.dataset.resizer) {
+            return;
+        }
+        // otherwise do click and drag scroll
+        if (event.button === 0) {
             prevX.current = event.clientX;
-          });
+            setMouseDragging(true);
         }
-      }
     }
-
-    function globalMouseUp() {
-      prevX.current = 0;
-
-      if (mouseDragging) {
+    // this local mouseup is used in addition to the global because sometimes
+    // the global add/remove are not called in time, resulting in issue #533
+    function mouseUp(event) {
+        event.preventDefault();
         setMouseDragging(false);
-      }
-    }
-
-    if (mouseDragging) {
-      window.addEventListener('mousemove', globalMouseMove, true);
-      window.addEventListener('mouseup', globalMouseUp, true);
-
-      cleanup = function cleanup() {
-        window.removeEventListener('mousemove', globalMouseMove, true);
-        window.removeEventListener('mouseup', globalMouseUp, true);
-      };
     }
-
-    return cleanup;
-  }, [model, mouseDragging, prevX]);
-
-  function mouseDown(event) {
-    // check if clicking a draggable element or a resize handle
-    var target = event.target;
-
-    if (target.draggable || target.dataset.resizer) {
-      return;
-    } // otherwise do click and drag scroll
-
-
-    if (event.button === 0) {
-      prevX.current = event.clientX;
-      setMouseDragging(true);
+    function mouseLeave(event) {
+        event.preventDefault();
     }
-  } // this local mouseup is used in addition to the global because sometimes
-  // the global add/remove are not called in time, resulting in issue #533
-
-
-  function mouseUp(event) {
-    event.preventDefault();
-    setMouseDragging(false);
-  }
-
-  function mouseLeave(event) {
-    event.preventDefault();
-  }
-
-  (0, _react.useEffect)(function () {
-    var curr = ref.current; // if ctrl is held down, zoom in with y-scroll
-    // else scroll horizontally with x-scroll
-
-    function onWheel(origEvent) {
-      var event = (0, _normalizeWheel.default)(origEvent);
-
-      if (origEvent.ctrlKey === true) {
-        origEvent.preventDefault();
-        delta.current += event.pixelY / 500;
-        model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
-
-        if (timeout.current) {
-          clearTimeout(timeout.current);
+    (0, react_1.useEffect)(function () {
+        var curr = ref.current;
+        // if ctrl is held down, zoom in with y-scroll
+        // else scroll horizontally with x-scroll
+        function onWheel(origEvent) {
+            var event = (0, normalize_wheel_1.default)(origEvent);
+            if (origEvent.ctrlKey === true) {
+                origEvent.preventDefault();
+                delta.current += event.pixelY / 500;
+                model.setScaleFactor(delta.current < 0 ? 1 - delta.current : 1 / (1 + delta.current));
+                if (timeout.current) {
+                    clearTimeout(timeout.current);
+                }
+                timeout.current = setTimeout(function () {
+                    model.setScaleFactor(1);
+                    model.zoomTo(delta.current > 0
+                        ? model.bpPerPx * (1 + delta.current)
+                        : model.bpPerPx / (1 - delta.current));
+                    delta.current = 0;
+                }, 300);
+            }
+            else {
+                // this is needed to stop the event from triggering "back button
+                // action" on MacOSX etc.  but is a heuristic to avoid preventing the
+                // inner-track scroll behavior
+                if (Math.abs(event.pixelX) > Math.abs(2 * event.pixelY)) {
+                    origEvent.preventDefault();
+                }
+                delta.current += event.pixelX;
+                if (!scheduled.current) {
+                    // use rAF to make it so multiple event handlers aren't fired per-frame
+                    // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
+                    scheduled.current = true;
+                    window.requestAnimationFrame(function () {
+                        model.horizontalScroll(delta.current);
+                        delta.current = 0;
+                        scheduled.current = false;
+                    });
+                }
+            }
         }
-
-        timeout.current = setTimeout(function () {
-          model.setScaleFactor(1);
-          model.zoomTo(delta.current > 0 ? model.bpPerPx * (1 + delta.current) : model.bpPerPx / (1 - delta.current));
-          delta.current = 0;
-        }, 300);
-      } else {
-        // this is needed to stop the event from triggering "back button
-        // action" on MacOSX etc.  but is a heuristic to avoid preventing the
-        // inner-track scroll behavior
-        if (Math.abs(event.pixelX) > Math.abs(2 * event.pixelY)) {
-          origEvent.preventDefault();
+        if (curr) {
+            curr.addEventListener('wheel', onWheel);
+            return function () {
+                curr.removeEventListener('wheel', onWheel);
+            };
         }
-
-        delta.current += event.pixelX;
-
-        if (!scheduled.current) {
-          // use rAF to make it so multiple event handlers aren't fired per-frame
-          // see https://calendar.perfplanet.com/2013/the-runtime-performance-checklist/
-          scheduled.current = true;
-          window.requestAnimationFrame(function () {
-            model.horizontalScroll(delta.current);
-            delta.current = 0;
-            scheduled.current = false;
-          });
-        }
-      }
-    }
-
-    if (curr) {
-      curr.addEventListener('wheel', onWheel);
-      return function () {
-        curr.removeEventListener('wheel', onWheel);
-      };
-    }
-
-    return function () {};
-  }, [model]);
-  return /*#__PURE__*/_react.default.createElement("div", {
-    ref: ref,
-    role: "presentation",
-    className: classes.tracksContainer,
-    onMouseDown: mouseDown,
-    onMouseUp: mouseUp,
-    onMouseLeave: mouseLeave
-  }, /*#__PURE__*/_react.default.createElement(_VerticalGuides.default, {
-    model: model
-  }), model.showCenterLine ? /*#__PURE__*/_react.default.createElement(_CenterLine.default, {
-    model: model
-  }) : null, /*#__PURE__*/_react.default.createElement(_RubberBand.default, {
-    model: model,
-    ControlComponent: /*#__PURE__*/_react.default.createElement(_ScaleBar.default, {
-      model: model,
-      style: {
-        height: _.SCALE_BAR_HEIGHT,
-        boxSizing: 'border-box'
-      }
-    })
-  }), children);
+        return function () { };
+    }, [model]);
+    return (react_1.default.createElement("div", { ref: ref, "data-testid": "trackContainer", className: classes.tracksContainer, onMouseDown: mouseDown, onMouseUp: mouseUp, onMouseLeave: mouseLeave },
+        react_1.default.createElement(VerticalGuides_1.default, { model: model }),
+        model.showCenterLine ? react_1.default.createElement(CenterLine_1.default, { model: model }) : null,
+        react_1.default.createElement(RubberBand_1.default, { model: model, ControlComponent: react_1.default.createElement(ScaleBar_1.default, { model: model, style: { height: __1.SCALE_BAR_HEIGHT, boxSizing: 'border-box' } }) }),
+        children));
 }
-
-var _default = (0, _mobxReact.observer)(TracksContainer);
-
-exports.default = _default;
+exports.default = (0, mobx_react_1.observer)(TracksContainer);
+//# sourceMappingURL=TracksContainer.js.map

package/dist/LinearGenomeView/components/TracksContainer.js.map

@@ -0,0 +1 @@
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package/dist/LinearGenomeView/components/VerticalGuides.d.ts

@@ -1,7 +1,6 @@
 /// <reference types="react" />
-import { Instance } from 'mobx-state-tree';
-import { LinearGenomeViewStateModel } from '..';
-declare type LGV = Instance<LinearGenomeViewStateModel>;
+import { LinearGenomeViewModel } from '..';
+declare type LGV = LinearGenomeViewModel;
 declare function VerticalGuides({ model }: {
     model: LGV;
 }): JSX.Element;

package/dist/LinearGenomeView/components/VerticalGuides.js

@@ -1,116 +1,78 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _blockTypes = require("@jbrowse/core/util/blockTypes");
-
-var _styles = require("@material-ui/core/styles");
-
-var _clsx = _interopRequireDefault(require("clsx"));
-
-var _mobxReact = require("mobx-react");
-
-var _react = _interopRequireDefault(require("react"));
-
-var _Block = require("../../BaseLinearDisplay/components/Block");
-
-var _util = require("../util");
-
-var useStyles = (0, _styles.makeStyles)(function (theme) {
-  return {
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importDefault(require("react"));
+var blockTypes_1 = require("@jbrowse/core/util/blockTypes");
+var mui_1 = require("tss-react/mui");
+var mobx_react_1 = require("mobx-react");
+var Block_1 = require("../../BaseLinearDisplay/components/Block");
+var util_1 = require("../util");
+var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     verticalGuidesZoomContainer: {
-      position: 'absolute',
-      height: '100%',
-      width: '100%',
-      zIndex: 1,
-      pointerEvents: 'none'
+        position: 'absolute',
+        height: '100%',
+        width: '100%',
+        zIndex: 1,
+        pointerEvents: 'none',
     },
     verticalGuidesContainer: {
-      position: 'absolute',
-      height: '100%',
-      zIndex: 1,
-      pointerEvents: 'none',
-      display: 'flex'
+        position: 'absolute',
+        height: '100%',
+        zIndex: 1,
+        pointerEvents: 'none',
+        display: 'flex',
     },
     tick: {
-      position: 'absolute',
-      height: '100%',
-      width: 1
+        position: 'absolute',
+        height: '100%',
+        width: 1,
     },
     majorTick: {
-      background: theme.palette.text.hint
+        background: theme.palette.text.secondary,
     },
     minorTick: {
-      background: theme.palette.divider
-    }
-  };
-});
-var RenderedVerticalGuides = (0, _mobxReact.observer)(function (_ref) {
-  var model = _ref.model;
-  var classes = useStyles();
-  return /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, model.staticBlocks.map(function (block, index) {
-    if (block instanceof _blockTypes.ContentBlock) {
-      var ticks = (0, _util.makeTicks)(block.start, block.end, model.bpPerPx);
-      return /*#__PURE__*/_react.default.createElement(_Block.ContentBlock, {
-        key: "".concat(block.key, "-").concat(index),
-        block: block
-      }, ticks.map(function (tick) {
-        var x = (block.reversed ? block.end - tick.base : tick.base - block.start) / model.bpPerPx;
-        return /*#__PURE__*/_react.default.createElement("div", {
-          key: tick.base,
-          className: (0, _clsx.default)(classes.tick, tick.type === 'major' || tick.type === 'labeledMajor' ? classes.majorTick : classes.minorTick),
-          style: {
-            left: x
-          }
-        });
-      }));
-    }
-
-    if (block instanceof _blockTypes.ElidedBlock) {
-      return /*#__PURE__*/_react.default.createElement(_Block.ElidedBlock, {
-        key: block.key,
-        width: block.widthPx
-      });
-    }
-
-    if (block instanceof _blockTypes.InterRegionPaddingBlock) {
-      return /*#__PURE__*/_react.default.createElement(_Block.InterRegionPaddingBlock, {
-        key: block.key,
-        width: block.widthPx,
-        boundary: block.variant === 'boundary'
-      });
-    }
-
-    return null;
-  }));
+        background: theme.palette.divider,
+    },
+}); });
+var RenderedVerticalGuides = (0, mobx_react_1.observer)(function (_a) {
+    var model = _a.model;
+    var _b = useStyles(), classes = _b.classes, cx = _b.cx;
+    return (react_1.default.createElement(react_1.default.Fragment, null, model.staticBlocks.map(function (block, index) {
+        if (block instanceof blockTypes_1.ContentBlock) {
+            var ticks = (0, util_1.makeTicks)(block.start, block.end, model.bpPerPx);
+            return (react_1.default.createElement(Block_1.ContentBlock, { key: "".concat(block.key, "-").concat(index), block: block }, ticks.map(function (tick) {
+                var x = (block.reversed
+                    ? block.end - tick.base
+                    : tick.base - block.start) / model.bpPerPx;
+                return (react_1.default.createElement("div", { key: tick.base, className: cx(classes.tick, tick.type === 'major' || tick.type === 'labeledMajor'
+                        ? classes.majorTick
+                        : classes.minorTick), style: { left: x } }));
+            })));
+        }
+        if (block instanceof blockTypes_1.ElidedBlock) {
+            return react_1.default.createElement(Block_1.ElidedBlock, { key: block.key, width: block.widthPx });
+        }
+        if (block instanceof blockTypes_1.InterRegionPaddingBlock) {
+            return (react_1.default.createElement(Block_1.InterRegionPaddingBlock, { key: block.key, width: block.widthPx, boundary: block.variant === 'boundary' }));
+        }
+        return null;
+    })));
 });
-
-function VerticalGuides(_ref2) {
-  var model = _ref2.model;
-  var classes = useStyles(); // find the block that needs pinning to the left side for context
-
-  var offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
-  return /*#__PURE__*/_react.default.createElement("div", {
-    className: classes.verticalGuidesZoomContainer,
-    style: {
-      transform: model.scaleFactor !== 1 ? "scaleX(".concat(model.scaleFactor, ")") : undefined
-    }
-  }, /*#__PURE__*/_react.default.createElement("div", {
-    className: classes.verticalGuidesContainer,
-    style: {
-      left: offsetLeft,
-      width: model.staticBlocks.totalWidthPx
-    }
-  }, /*#__PURE__*/_react.default.createElement(RenderedVerticalGuides, {
-    model: model
-  })));
+function VerticalGuides(_a) {
+    var model = _a.model;
+    var classes = useStyles().classes;
+    // find the block that needs pinning to the left side for context
+    var offsetLeft = model.staticBlocks.offsetPx - model.offsetPx;
+    return (react_1.default.createElement("div", { className: classes.verticalGuidesZoomContainer, style: {
+            transform: model.scaleFactor !== 1 ? "scaleX(".concat(model.scaleFactor, ")") : undefined,
+        } },
+        react_1.default.createElement("div", { className: classes.verticalGuidesContainer, style: {
+                left: offsetLeft,
+                width: model.staticBlocks.totalWidthPx,
+            } },
+            react_1.default.createElement(RenderedVerticalGuides, { model: model }))));
 }
-
-var _default = (0, _mobxReact.observer)(VerticalGuides);
-
-exports.default = _default;
+exports.default = (0, mobx_react_1.observer)(VerticalGuides);
+//# sourceMappingURL=VerticalGuides.js.map

package/dist/LinearGenomeView/components/VerticalGuides.js.map

@@ -0,0 +1 @@
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