@jbrowse/plugin-linear-genome-view 1.7.11 → 2.1.0

package/dist/LinearGenomeView/components/SearchBox.js

@@ -1,174 +1,163 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = void 0;
-
-var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
-
-var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
-
-var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
-
-var _react = _interopRequireDefault(require("react"));
-
-var _mobxReact = require("mobx-react");
-
-var _core = require("@material-ui/core");
-
-var _util = require("@jbrowse/core/util");
-
-var _RefNameAutocomplete = _interopRequireDefault(require("./RefNameAutocomplete"));
-
-var _util2 = require("./util");
-
-var _ = require("..");
-
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+var __generator = (this && this.__generator) || function (thisArg, body) {
+    var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
+    return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
+    function verb(n) { return function (v) { return step([n, v]); }; }
+    function step(op) {
+        if (f) throw new TypeError("Generator is already executing.");
+        while (_) try {
+            if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
+            if (y = 0, t) op = [op[0] & 2, t.value];
+            switch (op[0]) {
+                case 0: case 1: t = op; break;
+                case 4: _.label++; return { value: op[1], done: false };
+                case 5: _.label++; y = op[1]; op = [0]; continue;
+                case 7: op = _.ops.pop(); _.trys.pop(); continue;
+                default:
+                    if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
+                    if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
+                    if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
+                    if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
+                    if (t[2]) _.ops.pop();
+                    _.trys.pop(); continue;
+            }
+            op = body.call(thisArg, _);
+        } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
+        if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
+    }
+};
+var __read = (this && this.__read) || function (o, n) {
+    var m = typeof Symbol === "function" && o[Symbol.iterator];
+    if (!m) return o;
+    var i = m.call(o), r, ar = [], e;
+    try {
+        while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
+    }
+    catch (error) { e = { error: error }; }
+    finally {
+        try {
+            if (r && !r.done && (m = i["return"])) m.call(i);
+        }
+        finally { if (e) throw e.error; }
+    }
+    return ar;
+};
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importDefault(require("react"));
+var mobx_react_1 = require("mobx-react");
+var material_1 = require("@mui/material");
+var mui_1 = require("tss-react/mui");
+var util_1 = require("@jbrowse/core/util");
 // locals
-var useStyles = (0, _core.makeStyles)(function () {
-  return {
+var RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
+var util_2 = require("./util");
+var __1 = require("..");
+var useStyles = (0, mui_1.makeStyles)()(function () { return ({
     headerRefName: {
-      minWidth: 100
+        minWidth: 100,
+    },
+}); });
+function SearchBox(_a) {
+    var model = _a.model, showHelp = _a.showHelp;
+    var classes = useStyles().classes;
+    var theme = (0, material_1.useTheme)();
+    var session = (0, util_1.getSession)(model);
+    var textSearchManager = session.textSearchManager, assemblyManager = session.assemblyManager;
+    var assemblyNames = model.assemblyNames, rankSearchResults = model.rankSearchResults;
+    var assemblyName = assemblyNames[0];
+    var assembly = assemblyManager.get(assemblyName);
+    var searchScope = model.searchScope(assemblyName);
+    // gets a string as input, or use stored option results from previous query,
+    // then re-query and
+    // 1) if it has multiple results: pop a dialog
+    // 2) if it's a single result navigate to it
+    // 3) else assume it's a locstring and navigate to it
+    function handleSelectedRegion(option) {
+        return __awaiter(this, void 0, void 0, function () {
+            var trackId, location, label, _a, ref, rest, allRefs, results, e_1;
+            return __generator(this, function (_b) {
+                switch (_b.label) {
+                    case 0:
+                        trackId = option.getTrackId();
+                        location = option.getLocation();
+                        label = option.getLabel();
+                        _a = __read(location.split(':'), 2), ref = _a[0], rest = _a[1];
+                        allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
+                        _b.label = 1;
+                    case 1:
+                        _b.trys.push([1, 5, , 6]);
+                        if (!(allRefs.includes(location) ||
+                            (allRefs.includes(ref) &&
+                                rest !== undefined &&
+                                !Number.isNaN(parseInt(rest, 10))))) return [3 /*break*/, 2];
+                        model.navToLocString(location, assemblyName);
+                        return [3 /*break*/, 4];
+                    case 2: return [4 /*yield*/, (0, util_2.fetchResults)({
+                            queryString: label,
+                            searchType: 'exact',
+                            searchScope: searchScope,
+                            rankSearchResults: rankSearchResults,
+                            textSearchManager: textSearchManager,
+                            assembly: assembly,
+                        })];
+                    case 3:
+                        results = _b.sent();
+                        if (results.length > 1) {
+                            model.setSearchResults(results, label.toLowerCase());
+                            return [2 /*return*/];
+                        }
+                        else if (results.length === 1) {
+                            location = results[0].getLocation();
+                            trackId = results[0].getTrackId();
+                        }
+                        model.navToLocString(location, assemblyName);
+                        if (trackId) {
+                            model.showTrack(trackId);
+                        }
+                        _b.label = 4;
+                    case 4: return [3 /*break*/, 6];
+                    case 5:
+                        e_1 = _b.sent();
+                        console.error(e_1);
+                        session.notify("".concat(e_1), 'warning');
+                        return [3 /*break*/, 6];
+                    case 6: return [2 /*return*/];
+                }
+            });
+        });
     }
-  };
-});
-
-function SearchBox(_ref) {
-  var model = _ref.model,
-      showHelp = _ref.showHelp;
-  var classes = useStyles();
-  var theme = (0, _core.useTheme)();
-  var session = (0, _util.getSession)(model);
-  var textSearchManager = session.textSearchManager,
-      assemblyManager = session.assemblyManager;
-  var assemblyNames = model.assemblyNames,
-      rankSearchResults = model.rankSearchResults;
-  var assemblyName = assemblyNames[0];
-  var assembly = assemblyManager.get(assemblyName);
-  var searchScope = model.searchScope(assemblyName); // gets a string as input, or use stored option results from previous query,
-  // then re-query and
-  // 1) if it has multiple results: pop a dialog
-  // 2) if it's a single result navigate to it
-  // 3) else assume it's a locstring and navigate to it
-
-  function handleSelectedRegion(_x) {
-    return _handleSelectedRegion.apply(this, arguments);
-  }
-
-  function _handleSelectedRegion() {
-    _handleSelectedRegion = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(option) {
-      var trackId, location, label, _location$split, _location$split2, ref, rest, allRefs, results;
-
-      return _regenerator.default.wrap(function _callee$(_context) {
-        while (1) {
-          switch (_context.prev = _context.next) {
-            case 0:
-              trackId = option.getTrackId();
-              location = option.getLocation();
-              label = option.getLabel();
-              _location$split = location.split(':'), _location$split2 = (0, _slicedToArray2.default)(_location$split, 2), ref = _location$split2[0], rest = _location$split2[1];
-              allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
-              _context.prev = 5;
-
-              if (!(allRefs.includes(location) || allRefs.includes(ref) && rest !== undefined && !Number.isNaN(parseInt(rest, 10)))) {
-                _context.next = 10;
-                break;
-              }
-
-              model.navToLocString(location, assemblyName);
-              _context.next = 21;
-              break;
-
-            case 10:
-              _context.next = 12;
-              return (0, _util2.fetchResults)({
-                queryString: label,
-                searchType: 'exact',
+    return (react_1.default.createElement(RefNameAutocomplete_1.default, { showHelp: showHelp, onSelect: handleSelectedRegion, assemblyName: assemblyName, fetchResults: function (queryString) {
+            return (0, util_2.fetchResults)({
+                queryString: queryString,
                 searchScope: searchScope,
                 rankSearchResults: rankSearchResults,
                 textSearchManager: textSearchManager,
-                assembly: assembly
-              });
-
-            case 12:
-              results = _context.sent;
-
-              if (!(results.length > 1)) {
-                _context.next = 18;
-                break;
-              }
-
-              model.setSearchResults(results, label.toLowerCase());
-              return _context.abrupt("return");
-
-            case 18:
-              if (results.length === 1) {
-                location = results[0].getLocation();
-                trackId = results[0].getTrackId();
-              }
-
-            case 19:
-              model.navToLocString(location, assemblyName);
-
-              if (trackId) {
-                model.showTrack(trackId);
-              }
-
-            case 21:
-              _context.next = 27;
-              break;
-
-            case 23:
-              _context.prev = 23;
-              _context.t0 = _context["catch"](5);
-              console.error(_context.t0);
-              session.notify("".concat(_context.t0), 'warning');
-
-            case 27:
-            case "end":
-              return _context.stop();
-          }
-        }
-      }, _callee, null, [[5, 23]]);
-    }));
-    return _handleSelectedRegion.apply(this, arguments);
-  }
-
-  return /*#__PURE__*/_react.default.createElement(_RefNameAutocomplete.default, {
-    showHelp: showHelp,
-    onSelect: handleSelectedRegion,
-    assemblyName: assemblyName,
-    fetchResults: function fetchResults(queryString) {
-      return (0, _util2.fetchResults)({
-        queryString: queryString,
-        searchScope: searchScope,
-        rankSearchResults: rankSearchResults,
-        textSearchManager: textSearchManager,
-        assembly: assembly
-      });
-    },
-    model: model,
-    TextFieldProps: {
-      variant: 'outlined',
-      className: classes.headerRefName,
-      style: {
-        margin: _.SPACING,
-        minWidth: '175px'
-      },
-      InputProps: {
-        style: {
-          padding: 0,
-          height: _.WIDGET_HEIGHT,
-          background: (0, _core.alpha)(theme.palette.background.paper, 0.8)
-        }
-      }
-    }
-  });
+                assembly: assembly,
+            });
+        }, model: model, TextFieldProps: {
+            variant: 'outlined',
+            className: classes.headerRefName,
+            style: { margin: __1.SPACING, minWidth: '175px' },
+            InputProps: {
+                style: {
+                    padding: 0,
+                    height: __1.WIDGET_HEIGHT,
+                    background: (0, material_1.alpha)(theme.palette.background.paper, 0.8),
+                },
+            },
+        } }));
 }
-
-var _default = (0, _mobxReact.observer)(SearchBox);
-
-exports.default = _default;
+exports.default = (0, mobx_react_1.observer)(SearchBox);
+//# sourceMappingURL=SearchBox.js.map

package/dist/LinearGenomeView/components/SearchBox.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,0CAA+C;AAC/C,qCAA0C;AAE1C,2CAA+C;AAE/C,SAAS;AACT,8EAAuD;AACvD,+BAAqC;AACrC,wBAAkE;AAElE,IAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,cAAM,OAAA,CAAC;IACpC,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,EAJmC,CAInC,CAAC,CAAA;AAEH,SAAS,SAAS,CAAC,EAMlB;QALC,KAAK,WAAA,EACL,QAAQ,cAAA;IAKA,IAAA,OAAO,GAAK,SAAS,EAAE,QAAhB,CAAgB;IAC/B,IAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,IAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEzB,IAAA,iBAAiB,GAAsB,OAAO,kBAA7B,EAAE,eAAe,GAAK,OAAO,gBAAZ,CAAY;IAC9C,IAAA,aAAa,GAAwB,KAAK,cAA7B,EAAE,iBAAiB,GAAK,KAAK,kBAAV,CAAU;IAClD,IAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,IAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,YAAY,CAAC,CAAA;IAEnD,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,SAAe,oBAAoB,CAAC,MAAkB;;;;;;wBAChD,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;wBAC7B,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;wBAC7B,KAAK,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;wBACzB,KAAA,OAAc,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,IAAA,EAAhC,GAAG,QAAA,EAAE,IAAI,QAAA,CAAuB;wBACjC,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,KAAI,EAAE,CAAA;;;;6BAOvC,CAAA,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC;4BAC1B,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC;gCACpB,IAAI,KAAK,SAAS;gCAClB,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,CAAA,EAHpC,wBAGoC;wBAEpC,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;;4BAE5B,qBAAM,IAAA,mBAAY,EAAC;4BACjC,WAAW,EAAE,KAAK;4BAClB,UAAU,EAAE,OAAO;4BACnB,WAAW,aAAA;4BACX,iBAAiB,mBAAA;4BACjB,iBAAiB,mBAAA;4BACjB,QAAQ,UAAA;yBACT,CAAC,EAAA;;wBAPI,OAAO,GAAG,SAOd;wBACF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;4BACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;4BACpD,sBAAM;yBACP;6BAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;4BAC/B,QAAQ,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAA;4BACnC,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,UAAU,EAAE,CAAA;yBAClC;wBAED,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;wBAC5C,IAAI,OAAO,EAAE;4BACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;yBACzB;;;;;wBAGH,OAAO,CAAC,KAAK,CAAC,GAAC,CAAC,CAAA;wBAChB,OAAO,CAAC,MAAM,CAAC,UAAG,GAAC,CAAE,EAAE,SAAS,CAAC,CAAA;;;;;;KAEpC;IACD,OAAO,CACL,8BAAC,6BAAmB,IAClB,QAAQ,EAAE,QAAQ,EAClB,QAAQ,EAAE,oBAAoB,EAC9B,YAAY,EAAE,YAAY,EAC1B,YAAY,EAAE,UAAA,WAAW;YACvB,OAAA,IAAA,mBAAY,EAAC;gBACX,WAAW,aAAA;gBACX,WAAW,aAAA;gBACX,iBAAiB,mBAAA;gBACjB,iBAAiB,mBAAA;gBACjB,QAAQ,UAAA;aACT,CAAC;QANF,CAME,EAEJ,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE;YACd,OAAO,EAAE,UAAU;YACnB,SAAS,EAAE,OAAO,CAAC,aAAa;YAChC,KAAK,EAAE,EAAE,MAAM,EAAE,WAAO,EAAE,QAAQ,EAAE,OAAO,EAAE;YAC7C,UAAU,EAAE;gBACV,KAAK,EAAE;oBACL,OAAO,EAAE,CAAC;oBACV,MAAM,EAAE,iBAAa;oBACrB,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;iBACvD;aACF;SACF,GACD,CACH,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,SAAS,CAAC,CAAA"}

package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts

@@ -1,6 +1,5 @@
 /// <reference types="react" />
 import { LinearGenomeViewModel } from '../..';
-export declare const useStyles: (props?: any) => import("@material-ui/styles").ClassNameMap<"dialogContent" | "closeButton">;
 export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }: {
     model: LinearGenomeViewModel;
     optAssemblyName?: string;

package/dist/LinearGenomeView/components/SearchResultsDialog.js

@@ -1,158 +1,114 @@
 "use strict";
-
-var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
-
-Object.defineProperty(exports, "__esModule", {
-  value: true
-});
-exports.default = SearchResultsDialog;
-exports.useStyles = void 0;
-
-var _react = _interopRequireDefault(require("react"));
-
-var _mobxStateTree = require("mobx-state-tree");
-
-var _util = require("@jbrowse/core/util");
-
-var _core = require("@material-ui/core");
-
-var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
-
-var useStyles = (0, _core.makeStyles)(function (theme) {
-  return {
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+var react_1 = __importDefault(require("react"));
+var mui_1 = require("tss-react/mui");
+var mobx_state_tree_1 = require("mobx-state-tree");
+var util_1 = require("@jbrowse/core/util");
+var material_1 = require("@mui/material");
+var Close_1 = __importDefault(require("@mui/icons-material/Close"));
+var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
     dialogContent: {
-      width: '80em'
+        width: '80em',
     },
     closeButton: {
-      position: 'absolute',
-      right: theme.spacing(1),
-      top: theme.spacing(1),
-      color: theme.palette.grey[500]
+        position: 'absolute',
+        right: theme.spacing(1),
+        top: theme.spacing(1),
+        color: theme.palette.grey[500],
+    },
+}); });
+function SearchResultsDialog(_a) {
+    var _b, _c;
+    var model = _a.model, optAssemblyName = _a.optAssemblyName, handleClose = _a.handleClose;
+    var classes = useStyles().classes;
+    var session = (0, util_1.getSession)(model);
+    var pluginManager = (0, mobx_state_tree_1.getEnv)(session).pluginManager;
+    var assemblyManager = session.assemblyManager;
+    var assemblyName = optAssemblyName;
+    if (model.displayedRegions.length > 0) {
+        assemblyName = (_b = model.displayedRegions[0]) === null || _b === void 0 ? void 0 : _b.assemblyName;
     }
-  };
-});
-exports.useStyles = useStyles;
-
-function SearchResultsDialog(_ref) {
-  var _model$searchResults;
-
-  var model = _ref.model,
-      optAssemblyName = _ref.optAssemblyName,
-      handleClose = _ref.handleClose;
-  var classes = useStyles();
-  var session = (0, _util.getSession)(model);
-
-  var _getEnv = (0, _mobxStateTree.getEnv)(session),
-      pluginManager = _getEnv.pluginManager;
-
-  var assemblyManager = session.assemblyManager;
-  var assemblyName = optAssemblyName;
-
-  if (model.displayedRegions.length > 0) {
-    var _model$displayedRegio;
-
-    assemblyName = (_model$displayedRegio = model.displayedRegions[0]) === null || _model$displayedRegio === void 0 ? void 0 : _model$displayedRegio.assemblyName;
-  }
-
-  if (!assemblyName) {
-    throw new Error("Assembly name not found");
-  }
-
-  var assembly = assemblyManager.get(assemblyName);
-
-  if (!assembly) {
-    throw new Error("assembly ".concat(assemblyName, " not found"));
-  }
-
-  if (!assembly.regions) {
-    throw new Error("assembly ".concat(assemblyName, " regions not loaded"));
-  }
-
-  var assemblyRegions = assembly.regions;
-
-  function handleClick(location) {
-    try {
-      var newRegion = assemblyRegions.find(function (region) {
-        return location === region.refName;
-      });
-
-      if (newRegion) {
-        model.setDisplayedRegions([newRegion]); // we use showAllRegions after setDisplayedRegions to make the entire
-        // region visible, xref #1703
-
-        model.showAllRegions();
-      } else {
-        model.navToLocString(location, assemblyName);
-      }
-    } catch (e) {
-      console.warn(e);
-      session.notify("".concat(e), 'warning');
+    if (!assemblyName) {
+        throw new Error("Assembly name not found");
     }
-  }
-
-  function getTrackName(trackId) {
-    if (trackId) {
-      var trackConfigSchema = pluginManager.pluggableConfigSchemaType('track');
-      var configuration = (0, _mobxStateTree.resolveIdentifier)(trackConfigSchema, (0, _mobxStateTree.getRoot)(model), trackId);
-
-      if (configuration) {
-        var _configuration$name;
-
-        return (_configuration$name = configuration.name) === null || _configuration$name === void 0 ? void 0 : _configuration$name.value;
-      }
+    var assembly = assemblyManager.get(assemblyName);
+    if (!assembly) {
+        throw new Error("assembly ".concat(assemblyName, " not found"));
     }
-
-    return '';
-  }
-
-  return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
-    open: true,
-    maxWidth: "xl",
-    onClose: handleClose
-  }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Search results", handleClose ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
-    "data-testid": "close-resultsDialog",
-    className: classes.closeButton,
-    onClick: function onClick() {
-      handleClose();
+    if (!assembly.regions) {
+        throw new Error("assembly ".concat(assemblyName, " regions not loaded"));
     }
-  }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, !((_model$searchResults = model.searchResults) !== null && _model$searchResults !== void 0 && _model$searchResults.length) ? /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No results found for ", /*#__PURE__*/_react.default.createElement("b", null, model.searchQuery)) : /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Showing results for ", /*#__PURE__*/_react.default.createElement("b", null, model.searchQuery)), /*#__PURE__*/_react.default.createElement(_core.TableContainer, {
-    component: _core.Paper
-  }, /*#__PURE__*/_react.default.createElement(_core.Table, null, /*#__PURE__*/_react.default.createElement(_core.TableHead, null, /*#__PURE__*/_react.default.createElement(_core.TableRow, null, /*#__PURE__*/_react.default.createElement(_core.TableCell, null, "Name"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
-    align: "right"
-  }, "Location"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
-    align: "right"
-  }, "Track"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
-    align: "right"
-  }))), /*#__PURE__*/_react.default.createElement(_core.TableBody, null, model.searchResults.map(function (result) {
-    return /*#__PURE__*/_react.default.createElement(_core.TableRow, {
-      key: "".concat(result.getId())
-    }, /*#__PURE__*/_react.default.createElement(_core.TableCell, {
-      component: "th",
-      scope: "row"
-    }, result.getLabel()), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
-      align: "right"
-    }, result.getLocation()), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
-      align: "right"
-    }, getTrackName(result.getTrackId()) || 'N/A'), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
-      align: "right"
-    }, /*#__PURE__*/_react.default.createElement(_core.Button, {
-      onClick: function onClick() {
-        handleClick(result.getLocation());
-        var resultTrackId = result.getTrackId();
-
-        if (resultTrackId) {
-          model.showTrack(resultTrackId);
+    var assemblyRegions = assembly.regions;
+    function handleClick(location) {
+        try {
+            var newRegion = assemblyRegions.find(function (region) { return location === region.refName; });
+            if (newRegion) {
+                model.setDisplayedRegions([newRegion]);
+                // we use showAllRegions after setDisplayedRegions to make the entire
+                // region visible, xref #1703
+                model.showAllRegions();
+            }
+            else {
+                model.navToLocString(location, assemblyName);
+            }
         }
-
-        handleClose();
-      },
-      color: "primary",
-      variant: "contained"
-    }, "Go")));
-  })))))), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
-    onClick: function onClick() {
-      return handleClose();
-    },
-    color: "primary"
-  }, "Cancel")));
-}
+        catch (e) {
+            console.warn(e);
+            session.notify("".concat(e), 'warning');
+        }
+    }
+    function getTrackName(trackId) {
+        var _a;
+        if (trackId) {
+            var trackConfigSchema = pluginManager.pluggableConfigSchemaType('track');
+            var configuration = (0, mobx_state_tree_1.resolveIdentifier)(trackConfigSchema, (0, mobx_state_tree_1.getRoot)(model), trackId);
+            if (configuration) {
+                return (_a = configuration.name) === null || _a === void 0 ? void 0 : _a.value;
+            }
+        }
+        return '';
+    }
+    return (react_1.default.createElement(material_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
+        react_1.default.createElement(material_1.DialogTitle, null,
+            "Search results",
+            handleClose ? (react_1.default.createElement(material_1.IconButton, { "data-testid": "close-resultsDialog", className: classes.closeButton, onClick: function () {
+                    handleClose();
+                }, size: "large" },
+                react_1.default.createElement(Close_1.default, null))) : null),
+        react_1.default.createElement(material_1.Divider, null),
+        react_1.default.createElement(material_1.DialogContent, null, !((_c = model.searchResults) === null || _c === void 0 ? void 0 : _c.length) ? (react_1.default.createElement(material_1.Typography, null,
+            "No results found for ",
+            react_1.default.createElement("b", null, model.searchQuery))) : (react_1.default.createElement(react_1.default.Fragment, null,
+            react_1.default.createElement(material_1.Typography, null,
+                "Showing results for ",
+                react_1.default.createElement("b", null, model.searchQuery)),
+            react_1.default.createElement(material_1.TableContainer, { component: material_1.Paper },
+                react_1.default.createElement(material_1.Table, null,
+                    react_1.default.createElement(material_1.TableHead, null,
+                        react_1.default.createElement(material_1.TableRow, null,
+                            react_1.default.createElement(material_1.TableCell, null, "Name"),
+                            react_1.default.createElement(material_1.TableCell, { align: "right" }, "Location"),
+                            react_1.default.createElement(material_1.TableCell, { align: "right" }, "Track"),
+                            react_1.default.createElement(material_1.TableCell, { align: "right" }))),
+                    react_1.default.createElement(material_1.TableBody, null, model.searchResults.map(function (result) { return (react_1.default.createElement(material_1.TableRow, { key: "".concat(result.getId()) },
+                        react_1.default.createElement(material_1.TableCell, { component: "th", scope: "row" }, result.getLabel()),
+                        react_1.default.createElement(material_1.TableCell, { align: "right" }, result.getLocation()),
+                        react_1.default.createElement(material_1.TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
+                        react_1.default.createElement(material_1.TableCell, { align: "right" },
+                            react_1.default.createElement(material_1.Button, { onClick: function () {
+                                    handleClick(result.getLocation());
+                                    var resultTrackId = result.getTrackId();
+                                    if (resultTrackId) {
+                                        model.showTrack(resultTrackId);
+                                    }
+                                    handleClose();
+                                }, color: "primary", variant: "contained" }, "Go")))); }))))))),
+        react_1.default.createElement(material_1.Divider, null),
+        react_1.default.createElement(material_1.DialogActions, null,
+            react_1.default.createElement(material_1.Button, { onClick: function () { return handleClose(); }, color: "primary" }, "Cancel"))));
+}
+exports.default = SearchResultsDialog;
+//# sourceMappingURL=SearchResultsDialog.js.map

package/dist/LinearGenomeView/components/SearchResultsDialog.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"SearchResultsDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,gDAAyB;AACzB,qCAA0C;AAC1C,mDAAoE;AACpE,2CAA+C;AAC/C,0CAgBsB;AACtB,oEAAiD;AAGjD,IAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,UAAA,KAAK,IAAI,OAAA,CAAC;IACvC,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,EAVsC,CAUtC,CAAC,CAAA;AAEH,SAAwB,mBAAmB,CAAC,EAQ3C;;QAPC,KAAK,WAAA,EACL,eAAe,qBAAA,EACf,WAAW,iBAAA;IAMH,IAAA,OAAO,GAAK,SAAS,EAAE,QAAhB,CAAgB;IAC/B,IAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACzB,IAAA,aAAa,GAAK,IAAA,wBAAM,EAAC,OAAO,CAAC,cAApB,CAAoB;IACjC,IAAA,eAAe,GAAK,OAAO,gBAAZ,CAAY;IACnC,IAAI,YAAY,GAAG,eAAe,CAAA;IAClC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE;QACrC,YAAY,GAAG,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA;KACvD;IACD,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;KAC3C;IACD,IAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,mBAAY,YAAY,eAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,mBAAY,YAAY,wBAAqB,CAAC,CAAA;KAC/D;IACD,IAAM,eAAe,GAAG,QAAQ,CAAC,OAAO,CAAA;IAExC,SAAS,WAAW,CAAC,QAAgB;QACnC,IAAI;YACF,IAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CACpC,UAAA,MAAM,IAAI,OAAA,QAAQ,KAAK,MAAM,CAAC,OAAO,EAA3B,CAA2B,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aAC7C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,UAAG,CAAC,CAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,IAAM,iBAAiB,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC1E,IAAM,aAAa,GAAG,IAAA,mCAAiB,EACrC,iBAAiB,EACjB,IAAA,yBAAO,EAAC,KAAK,CAAC,EACd,OAAO,CACR,CAAA;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,MAAA,aAAa,CAAC,IAAI,0CAAE,KAAK,CAAA;aACjC;SACF;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW;QAC7C,8BAAC,sBAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,qBAAU,mBACG,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE;oBACP,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,IAAI,EAAC,OAAO;gBAEZ,8BAAC,eAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa,QACX,CAAC,CAAA,MAAA,KAAK,CAAC,aAAa,0CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,CAC9B,8BAAC,qBAAU;;YACY,yCAAI,KAAK,CAAC,WAAW,CAAK,CACpC,CACd,CAAC,CAAC,CAAC,CACF;YACE,8BAAC,qBAAU;;gBACW,yCAAI,KAAK,CAAC,WAAW,CAAK,CACnC;YACb,8BAAC,yBAAc,IAAC,SAAS,EAAE,gBAAK;gBAC9B,8BAAC,gBAAK;oBACJ,8BAAC,oBAAS;wBACR,8BAAC,mBAAQ;4BACP,8BAAC,oBAAS,eAAiB;4BAC3B,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;4BAC7C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;4BAC1C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;oBACZ,8BAAC,oBAAS,QACP,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,UAAA,MAAM,IAAI,OAAA,CACjC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,UAAG,MAAM,CAAC,KAAK,EAAE,CAAE;wBAChC,8BAAC,oBAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,MAAM,CAAC,WAAW,EAAE,CACX;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO;4BACtB,8BAAC,iBAAM,IACL,OAAO,EAAE;oCACP,WAAW,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAA;oCACjC,IAAM,aAAa,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;oCACzC,IAAI,aAAa,EAAE;wCACjB,KAAK,CAAC,SAAS,CAAC,aAAa,CAAC,CAAA;qCAC/B;oCACD,WAAW,EAAE,CAAA;gCACf,CAAC,EACD,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,SAGZ,CACC,CACH,CACZ,EA5BkC,CA4BlC,CAAC,CACQ,CACN,CACO,CAChB,CACJ,CACa;QAChB,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,cAAM,OAAA,WAAW,EAAE,EAAb,CAAa,EAAE,KAAK,EAAC,SAAS,aAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC;AAjJD,sCAiJC"}