@jbrowse/plugin-linear-genome-view 1.7.11 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +119 -139
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -0
- package/dist/BaseLinearDisplay/components/Block.js +53 -74
- package/dist/BaseLinearDisplay/components/Block.js.map +1 -0
- package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +11 -1
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +64 -103
- package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +1 -0
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +146 -175
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -0
- package/dist/BaseLinearDisplay/components/Tooltip.js +109 -116
- package/dist/BaseLinearDisplay/components/Tooltip.js.map +1 -0
- package/dist/BaseLinearDisplay/index.js +13 -40
- package/dist/BaseLinearDisplay/index.js.map +1 -0
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +19 -14
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +605 -684
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -0
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +15 -22
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -0
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +7 -8
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +266 -312
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -0
- package/dist/LinearBareDisplay/configSchema.js +11 -17
- package/dist/LinearBareDisplay/configSchema.js.map +1 -0
- package/dist/LinearBareDisplay/index.js +7 -20
- package/dist/LinearBareDisplay/index.js.map +1 -0
- package/dist/LinearBareDisplay/model.d.ts +15 -13
- package/dist/LinearBareDisplay/model.js +36 -42
- package/dist/LinearBareDisplay/model.js.map +1 -0
- package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +1 -1
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +76 -85
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -0
- package/dist/LinearBasicDisplay/configSchema.js +15 -23
- package/dist/LinearBasicDisplay/configSchema.js.map +1 -0
- package/dist/LinearBasicDisplay/index.js +10 -22
- package/dist/LinearBasicDisplay/index.js.map +1 -0
- package/dist/LinearBasicDisplay/model.d.ts +20 -14
- package/dist/LinearBasicDisplay/model.js +180 -159
- package/dist/LinearBasicDisplay/model.js.map +1 -0
- package/dist/LinearGenomeView/components/CenterLine.d.ts +2 -8
- package/dist/LinearGenomeView/components/CenterLine.js +60 -74
- package/dist/LinearGenomeView/components/CenterLine.js.map +1 -0
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +141 -141
- package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/Gridlines.d.ts +8 -0
- package/dist/LinearGenomeView/components/Gridlines.js +78 -0
- package/dist/LinearGenomeView/components/Gridlines.js.map +1 -0
- package/dist/LinearGenomeView/components/Header.d.ts +1 -0
- package/dist/LinearGenomeView/components/Header.js +70 -125
- package/dist/LinearGenomeView/components/Header.js.map +1 -0
- package/dist/LinearGenomeView/components/HelpDialog.d.ts +0 -1
- package/dist/LinearGenomeView/components/HelpDialog.js +62 -44
- package/dist/LinearGenomeView/components/HelpDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/ImportForm.d.ts +1 -0
- package/dist/LinearGenomeView/components/ImportForm.js +222 -289
- package/dist/LinearGenomeView/components/ImportForm.js.map +1 -0
- package/dist/LinearGenomeView/components/LinearGenomeView.js +60 -124
- package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -0
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +198 -337
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -0
- package/dist/LinearGenomeView/components/MiniControls.js +64 -78
- package/dist/LinearGenomeView/components/MiniControls.js.map +1 -0
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +229 -293
- package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -0
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +3 -3
- package/dist/LinearGenomeView/components/OverviewScaleBar.js +275 -370
- package/dist/LinearGenomeView/components/OverviewScaleBar.js.map +1 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +1 -1
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +237 -324
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -0
- package/dist/LinearGenomeView/components/RubberBand.js +228 -296
- package/dist/LinearGenomeView/components/RubberBand.js.map +1 -0
- package/dist/LinearGenomeView/components/Ruler.js +45 -90
- package/dist/LinearGenomeView/components/Ruler.js.map +1 -0
- package/dist/LinearGenomeView/components/ScaleBar.d.ts +8 -403
- package/dist/LinearGenomeView/components/ScaleBar.js +121 -172
- package/dist/LinearGenomeView/components/ScaleBar.js.map +1 -0
- package/dist/LinearGenomeView/components/SearchBox.js +155 -166
- package/dist/LinearGenomeView/components/SearchBox.js.map +1 -0
- package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -1
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +105 -149
- package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/SequenceDialog.js +219 -272
- package/dist/LinearGenomeView/components/SequenceDialog.js.map +1 -0
- package/dist/LinearGenomeView/components/TrackContainer.d.ts +2 -1
- package/dist/LinearGenomeView/components/TrackContainer.js +113 -158
- package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -0
- package/dist/LinearGenomeView/components/TrackLabel.d.ts +6 -42
- package/dist/LinearGenomeView/components/TrackLabel.js +113 -133
- package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -0
- package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
- package/dist/LinearGenomeView/components/TracksContainer.js +172 -199
- package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -0
- package/dist/LinearGenomeView/components/ZoomControls.js +72 -87
- package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -0
- package/dist/LinearGenomeView/components/util.js +94 -71
- package/dist/LinearGenomeView/components/util.js.map +1 -0
- package/dist/LinearGenomeView/index.d.ts +64 -77
- package/dist/LinearGenomeView/index.js +1035 -1412
- package/dist/LinearGenomeView/index.js.map +1 -0
- package/dist/LinearGenomeView/util.js +76 -83
- package/dist/LinearGenomeView/util.js.map +1 -0
- package/dist/index.d.ts +98 -48
- package/dist/index.js +225 -295
- package/dist/index.js.map +1 -0
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +9 -0
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +68 -0
- package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -0
- package/esm/BaseLinearDisplay/components/Block.d.ts +15 -0
- package/esm/BaseLinearDisplay/components/Block.js +46 -0
- package/esm/BaseLinearDisplay/components/Block.js.map +1 -0
- package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +22 -0
- package/esm/BaseLinearDisplay/components/LinearBlocks.js +62 -0
- package/esm/BaseLinearDisplay/components/LinearBlocks.js.map +1 -0
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -0
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +114 -0
- package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -0
- package/esm/BaseLinearDisplay/components/Tooltip.d.ts +8 -0
- package/esm/BaseLinearDisplay/components/Tooltip.js +64 -0
- package/esm/BaseLinearDisplay/components/Tooltip.js.map +1 -0
- package/esm/BaseLinearDisplay/index.d.ts +5 -0
- package/esm/BaseLinearDisplay/index.js +4 -0
- package/esm/BaseLinearDisplay/index.js.map +1 -0
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +232 -0
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +541 -0
- package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -0
- package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -0
- package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +14 -0
- package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +225 -0
- package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -0
- package/esm/LinearBareDisplay/configSchema.d.ts +2 -0
- package/esm/LinearBareDisplay/configSchema.js +9 -0
- package/esm/LinearBareDisplay/configSchema.js.map +1 -0
- package/esm/LinearBareDisplay/index.d.ts +2 -0
- package/esm/LinearBareDisplay/index.js +3 -0
- package/esm/LinearBareDisplay/index.js.map +1 -0
- package/esm/LinearBareDisplay/model.d.ts +194 -0
- package/esm/LinearBareDisplay/model.js +28 -0
- package/esm/LinearBareDisplay/model.js.map +1 -0
- package/esm/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -0
- package/esm/LinearBasicDisplay/components/SetMaxHeight.js +40 -0
- package/esm/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -0
- package/esm/LinearBasicDisplay/configSchema.d.ts +2 -0
- package/esm/LinearBasicDisplay/configSchema.js +14 -0
- package/esm/LinearBasicDisplay/configSchema.js.map +1 -0
- package/esm/LinearBasicDisplay/index.d.ts +2 -0
- package/esm/LinearBasicDisplay/index.js +3 -0
- package/esm/LinearBasicDisplay/index.js.map +1 -0
- package/esm/LinearBasicDisplay/model.d.ts +218 -0
- package/esm/LinearBasicDisplay/model.js +127 -0
- package/esm/LinearBasicDisplay/model.js.map +1 -0
- package/esm/LinearGenomeView/components/CenterLine.d.ts +8 -0
- package/esm/LinearGenomeView/components/CenterLine.js +40 -0
- package/esm/LinearGenomeView/components/CenterLine.js.map +1 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.js +52 -0
- package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/Gridlines.d.ts +8 -0
- package/esm/LinearGenomeView/components/Gridlines.js +71 -0
- package/esm/LinearGenomeView/components/Gridlines.js.map +1 -0
- package/esm/LinearGenomeView/components/Header.d.ts +7 -0
- package/esm/LinearGenomeView/components/Header.js +81 -0
- package/esm/LinearGenomeView/components/Header.js.map +1 -0
- package/esm/LinearGenomeView/components/HelpDialog.d.ts +4 -0
- package/esm/LinearGenomeView/components/HelpDialog.js +58 -0
- package/esm/LinearGenomeView/components/HelpDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/ImportForm.d.ts +7 -0
- package/esm/LinearGenomeView/components/ImportForm.js +141 -0
- package/esm/LinearGenomeView/components/ImportForm.js.map +1 -0
- package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +7 -0
- package/esm/LinearGenomeView/components/LinearGenomeView.js +63 -0
- package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -0
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -0
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +132 -0
- package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -0
- package/esm/LinearGenomeView/components/MiniControls.d.ts +6 -0
- package/esm/LinearGenomeView/components/MiniControls.js +25 -0
- package/esm/LinearGenomeView/components/MiniControls.js.map +1 -0
- package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -0
- package/esm/LinearGenomeView/components/OverviewRubberBand.js +197 -0
- package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -0
- package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +148 -0
- package/esm/LinearGenomeView/components/OverviewScaleBar.js +287 -0
- package/esm/LinearGenomeView/components/OverviewScaleBar.js.map +1 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +22 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js +136 -0
- package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -0
- package/esm/LinearGenomeView/components/RubberBand.d.ts +9 -0
- package/esm/LinearGenomeView/components/RubberBand.js +197 -0
- package/esm/LinearGenomeView/components/RubberBand.js.map +1 -0
- package/esm/LinearGenomeView/components/Ruler.d.ts +27 -0
- package/esm/LinearGenomeView/components/Ruler.js +50 -0
- package/esm/LinearGenomeView/components/Ruler.js.map +1 -0
- package/esm/LinearGenomeView/components/ScaleBar.d.ts +10 -0
- package/esm/LinearGenomeView/components/ScaleBar.js +112 -0
- package/esm/LinearGenomeView/components/ScaleBar.js.map +1 -0
- package/esm/LinearGenomeView/components/SearchBox.d.ts +8 -0
- package/esm/LinearGenomeView/components/SearchBox.js +94 -0
- package/esm/LinearGenomeView/components/SearchBox.js.map +1 -0
- package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +7 -0
- package/esm/LinearGenomeView/components/SearchResultsDialog.js +107 -0
- package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/SequenceDialog.d.ts +8 -0
- package/esm/LinearGenomeView/components/SequenceDialog.js +147 -0
- package/esm/LinearGenomeView/components/SequenceDialog.js.map +1 -0
- package/esm/LinearGenomeView/components/TrackContainer.d.ts +10 -0
- package/esm/LinearGenomeView/components/TrackContainer.js +104 -0
- package/esm/LinearGenomeView/components/TrackContainer.js.map +1 -0
- package/esm/LinearGenomeView/components/TrackLabel.d.ts +8 -0
- package/esm/LinearGenomeView/components/TrackLabel.js +88 -0
- package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -0
- package/{dist/LinearGenomeView/components/VerticalGuides.d.ts → esm/LinearGenomeView/components/TracksContainer.d.ts} +4 -3
- package/esm/LinearGenomeView/components/TracksContainer.js +142 -0
- package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -0
- package/esm/LinearGenomeView/components/ZoomControls.d.ts +7 -0
- package/esm/LinearGenomeView/components/ZoomControls.js +32 -0
- package/esm/LinearGenomeView/components/ZoomControls.js.map +1 -0
- package/esm/LinearGenomeView/components/util.d.ts +14 -0
- package/esm/LinearGenomeView/components/util.js +17 -0
- package/esm/LinearGenomeView/components/util.js.map +1 -0
- package/esm/LinearGenomeView/index.d.ts +275 -0
- package/esm/LinearGenomeView/index.js +978 -0
- package/esm/LinearGenomeView/index.js.map +1 -0
- package/esm/LinearGenomeView/util.d.ts +14 -0
- package/esm/LinearGenomeView/util.js +62 -0
- package/esm/LinearGenomeView/util.js.map +1 -0
- package/esm/index.d.ts +615 -0
- package/esm/index.js +127 -0
- package/esm/index.js.map +1 -0
- package/package.json +22 -15
- package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +4 -4
- package/src/BaseLinearDisplay/components/Block.tsx +5 -5
- package/src/BaseLinearDisplay/components/LinearBlocks.tsx +4 -4
- package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +9 -9
- package/src/BaseLinearDisplay/components/Tooltip.tsx +14 -4
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +6 -4
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +1 -1
- package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +10 -7
- package/src/LinearBasicDisplay/model.ts +19 -11
- package/src/LinearGenomeView/components/CenterLine.tsx +6 -11
- package/src/LinearGenomeView/components/ExportSvgDialog.tsx +5 -5
- package/src/LinearGenomeView/components/{VerticalGuides.tsx → Gridlines.tsx} +9 -11
- package/src/LinearGenomeView/components/Header.tsx +10 -15
- package/src/LinearGenomeView/components/HelpDialog.tsx +5 -5
- package/src/LinearGenomeView/components/ImportForm.tsx +6 -12
- package/src/LinearGenomeView/components/LinearGenomeView.test.js +16 -6
- package/src/LinearGenomeView/components/LinearGenomeView.tsx +6 -9
- package/src/LinearGenomeView/components/MiniControls.tsx +29 -40
- package/src/LinearGenomeView/components/OverviewRubberBand.tsx +20 -29
- package/src/LinearGenomeView/components/OverviewScaleBar.tsx +61 -59
- package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +13 -44
- package/src/LinearGenomeView/components/RubberBand.tsx +12 -18
- package/src/LinearGenomeView/components/Ruler.tsx +5 -11
- package/src/LinearGenomeView/components/ScaleBar.tsx +23 -27
- package/src/LinearGenomeView/components/SearchBox.tsx +4 -3
- package/src/LinearGenomeView/components/SearchResultsDialog.tsx +7 -6
- package/src/LinearGenomeView/components/SequenceDialog.tsx +10 -10
- package/src/LinearGenomeView/components/TrackContainer.tsx +29 -39
- package/src/LinearGenomeView/components/TrackLabel.tsx +76 -79
- package/src/LinearGenomeView/components/TracksContainer.tsx +10 -15
- package/src/LinearGenomeView/components/ZoomControls.tsx +12 -13
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +500 -550
- package/src/LinearGenomeView/index.test.ts +15 -36
- package/src/LinearGenomeView/index.tsx +390 -564
- package/src/index.ts +1 -1
- package/dist/LinearBareDisplay/index.test.js +0 -33
- package/dist/LinearGenomeView/components/LinearGenomeView.test.js +0 -234
- package/dist/LinearGenomeView/components/ScaleBar.test.js +0 -180
- package/dist/LinearGenomeView/components/VerticalGuides.js +0 -116
- package/dist/LinearGenomeView/index.test.js +0 -1187
- package/dist/LinearGenomeView/util.test.js +0 -78
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}));
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function Ruler(_a) {
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var classes = useStyles().classes;
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.map(function (tick) {
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return (react_1.default.createElement("text", { x: x - 3, y: 7 + 11, key: "label-".concat(tick.base), style: { fontSize: '11px' }, className: classes.majorTickLabel }, (0, util_2.getTickDisplayStr)(tick.base + 1, bpPerPx)));
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})));
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Ruler.propTypes = {
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bpPerPx: prop_types_1.default.number.isRequired,
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major: prop_types_1.default.bool,
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exports.default = _default;
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exports.default = (0, mobx_react_1.observer)(Ruler);
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//# sourceMappingURL=Ruler.js.map
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@@ -0,0 +1 @@
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{"version":3,"file":"Ruler.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/Ruler.tsx"],"names":[],"mappings":";;;;;AAAA,qCAA0C;AAC1C,yCAAqC;AACrC,0DAAuC;AACvC,gDAAyB;AACzB,gCAAmC;AACnC,2CAAsD;AAEtD,IAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,WAAC,WAAW,IAAK,OAAA,CAAC;IAC/C,cAAc,EAAE;QACd,QAAQ,EAAE,MAAM;QAChB,oCAAoC;KACrC;IACD,SAAS,EAAE;QACT,MAAM,EAAE,MAAM;QACd,wCAAwC;KACzC;IACD,SAAS,EAAE;QACT,MAAM,EAAE,MAAM;QACd,mCAAmC;KACpC;CACF,CAAC,EAb8C,CAa9C,CAAC,CAAA;AAEH,SAAS,KAAK,CAAC,EAcd;QAbC,KAAK,WAAA,EACL,GAAG,SAAA,EACH,OAAO,aAAA,EACP,QAAQ,cAAA,EACR,KAAK,WAAA,EACL,KAAK,WAAA;IASG,IAAA,OAAO,GAAK,SAAS,EAAE,QAAhB,CAAgB;IAC/B,IAAM,KAAK,GAAG,IAAA,gBAAS,EAAC,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,KAAK,CAAC,CAAA;IAC1D,OAAO,CACL;QACG,KAAK,CAAC,GAAG,CAAC,UAAA,IAAI;YACb,IAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;YACpE,OAAO,CACL,wCACE,GAAG,EAAE,IAAI,CAAC,IAAI,EACd,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,CAAC,EACL,EAAE,EAAE,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EACjC,WAAW,EAAE,CAAC,EACd,MAAM,EAAE,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,EAC/C,SAAS,EACP,IAAI,CAAC,IAAI,KAAK,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,SAAS,aAEtD,IAAI,CAAC,IAAI,GAClB,CACH,CAAA;QACH,CAAC,CAAC;QACD,KAAK;aACH,MAAM,CAAC,UAAA,IAAI,IAAI,OAAA,IAAI,CAAC,IAAI,KAAK,OAAO,EAArB,CAAqB,CAAC;aACrC,GAAG,CAAC,UAAA,IAAI;YACP,IAAM,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,GAAG,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,GAAG,KAAK,CAAC,GAAG,OAAO,CAAA;YACpE,OAAO,CACL,wCACE,CAAC,EAAE,CAAC,GAAG,CAAC,EACR,CAAC,EAAE,CAAC,GAAG,EAAE,EACT,GAAG,EAAE,gBAAS,IAAI,CAAC,IAAI,CAAE,EACzB,KAAK,EAAE,EAAE,QAAQ,EAAE,MAAM,EAAE,EAC3B,SAAS,EAAE,OAAO,CAAC,cAAc,IAEhC,IAAA,wBAAiB,EAAC,IAAI,CAAC,IAAI,GAAG,CAAC,EAAE,OAAO,CAAC,CACrC,CACR,CAAA;QACH,CAAC,CAAC,CACH,CACJ,CAAA;AACH,CAAC;AAED,KAAK,CAAC,SAAS,GAAG;IAChB,KAAK,EAAE,oBAAc,CAAC,MAAM,CAAC,UAAU;IACvC,GAAG,EAAE,oBAAc,CAAC,MAAM,CAAC,UAAU;IACrC,OAAO,EAAE,oBAAc,CAAC,MAAM,CAAC,UAAU;IACzC,QAAQ,EAAE,oBAAc,CAAC,IAAI;IAC7B,KAAK,EAAE,oBAAc,CAAC,IAAI;IAC1B,KAAK,EAAE,oBAAc,CAAC,IAAI;CAC3B,CAAA;AAED,KAAK,CAAC,YAAY,GAAG;IACnB,QAAQ,EAAE,KAAK;IACf,KAAK,EAAE,IAAI;IACX,KAAK,EAAE,IAAI;CACZ,CAAA;AAED,kBAAe,IAAA,qBAAQ,EAAC,KAAK,CAAC,CAAA"}
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bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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setRefName(newRefName: string): void;
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tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
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hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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|
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|
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|
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|
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|
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key: string;
|
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|
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|
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|
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|
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|
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|
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|
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|
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|
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}[];
|
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|
-
afterDisplayedRegionsSet(cb: Function): void;
|
|
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|
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|
|
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|
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|
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|
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centerAt(bp: number, refName: string, regionIndex: number): void;
|
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|
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|
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|
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|
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|
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|
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|
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setDraggingTrackId(idx?: string | undefined): void;
|
|
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|
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setScaleFactor(factor: number): void;
|
|
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|
-
} & {
|
|
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|
-
slide: (viewWidths: number) => void;
|
|
167
|
-
} & {
|
|
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|
-
zoom: (targetBpPerPx: number) => void;
|
|
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|
-
} & {
|
|
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|
-
readonly canShowCytobands: boolean;
|
|
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|
-
readonly showCytobands: boolean;
|
|
172
|
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readonly anyCytobandsExist: boolean;
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readonly cytobandOffset: number;
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174
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} & {
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175
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menuItems(): import("@jbrowse/core/ui").MenuItem[];
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} & {
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177
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readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
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readonly roundedDynamicBlocks: {
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start: number;
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end: number;
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regionNumber?: number | undefined;
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reversed?: boolean | undefined;
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refName: string;
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assemblyName: string;
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key: string;
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offsetPx: number;
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widthPx: number;
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variant?: string | undefined;
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isLeftEndOfDisplayedRegion?: boolean | undefined;
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}[];
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readonly visibleLocStrings: string;
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readonly coarseVisibleLocStrings: string;
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} & {
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195
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clearView(): void;
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196
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setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
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afterAttach(): void;
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} & {
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exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
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} & {
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201
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rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
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202
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} & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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} & {
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id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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type: import("mobx-state-tree").ISimpleType<"LinearGenomeView">;
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offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
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displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
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refName: import("mobx-state-tree").ISimpleType<string>;
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start: import("mobx-state-tree").ISimpleType<number>;
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end: import("mobx-state-tree").ISimpleType<number>;
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reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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215
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} & {
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assemblyName: import("mobx-state-tree").ISimpleType<string>;
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}, {
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setRefName(newRefName: string): void;
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219
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}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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220
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tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
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221
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hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
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224
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trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<"hierarchical">, [undefined]>;
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225
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trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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226
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showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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227
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showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
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228
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}, {
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width: number;
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230
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} & {
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231
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menuItems(): import("@jbrowse/core/ui").MenuItem[];
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232
|
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} & {
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233
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setDisplayName(name: string): void;
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234
|
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setWidth(newWidth: number): void;
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235
|
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} & {
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236
|
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volatileWidth: number | undefined;
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237
|
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minimumBlockWidth: number;
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238
|
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draggingTrackId: string | undefined;
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239
|
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volatileError: Error | undefined;
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240
|
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afterDisplayedRegionsSetCallbacks: Function[];
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241
|
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scaleFactor: number;
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242
|
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trackRefs: {
|
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243
|
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[key: string]: any;
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244
|
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};
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245
|
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coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
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246
|
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coarseTotalBp: number;
|
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247
|
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leftOffset: import("..").BpOffset | undefined;
|
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248
|
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rightOffset: import("..").BpOffset | undefined;
|
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249
|
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searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined;
|
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250
|
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searchQuery: string | undefined;
|
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251
|
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seqDialogDisplayed: boolean;
|
|
252
|
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} & {
|
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253
|
-
readonly width: number;
|
|
254
|
-
readonly interRegionPaddingWidth: number;
|
|
255
|
-
readonly assemblyNames: string[];
|
|
256
|
-
} & {
|
|
257
|
-
readonly assemblyErrors: string;
|
|
258
|
-
readonly assembliesInitialized: boolean;
|
|
259
|
-
readonly initialized: boolean;
|
|
260
|
-
readonly hasDisplayedRegions: boolean;
|
|
261
|
-
readonly isSearchDialogDisplayed: boolean;
|
|
262
|
-
readonly scaleBarHeight: number;
|
|
263
|
-
readonly headerHeight: number;
|
|
264
|
-
readonly trackHeights: any;
|
|
265
|
-
readonly trackHeightsWithResizeHandles: any;
|
|
266
|
-
readonly height: any;
|
|
267
|
-
readonly totalBp: number;
|
|
268
|
-
readonly maxBpPerPx: number;
|
|
269
|
-
readonly minBpPerPx: number;
|
|
270
|
-
readonly error: string | Error;
|
|
271
|
-
readonly maxOffset: number;
|
|
272
|
-
readonly minOffset: number;
|
|
273
|
-
readonly displayedRegionsTotalPx: number;
|
|
274
|
-
renderProps(): any;
|
|
275
|
-
searchScope(assemblyName: string): {
|
|
276
|
-
assemblyName: string;
|
|
277
|
-
includeAggregateIndexes: boolean;
|
|
278
|
-
tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
|
|
279
|
-
};
|
|
280
|
-
bpToPx({ refName, coord, regionNumber, }: {
|
|
281
|
-
refName: string;
|
|
282
|
-
coord: number;
|
|
283
|
-
regionNumber?: number | undefined;
|
|
284
|
-
}): {
|
|
285
|
-
index: number;
|
|
286
|
-
offsetPx: number;
|
|
287
|
-
} | undefined;
|
|
288
|
-
pxToBp(px: number): {
|
|
289
|
-
oob: boolean;
|
|
290
|
-
coord: number;
|
|
291
|
-
offset: number;
|
|
292
|
-
index: number;
|
|
293
|
-
refName: string;
|
|
294
|
-
start: number;
|
|
295
|
-
end: number;
|
|
296
|
-
reversed: boolean;
|
|
297
|
-
assemblyName: string;
|
|
298
|
-
};
|
|
299
|
-
getTrack(id: string): any;
|
|
300
|
-
rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
|
|
301
|
-
rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
|
|
302
|
-
readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
|
|
303
|
-
readonly centerLineInfo: {
|
|
304
|
-
oob: boolean;
|
|
305
|
-
coord: number;
|
|
306
|
-
offset: number;
|
|
307
|
-
index: number;
|
|
308
|
-
refName: string;
|
|
309
|
-
start: number;
|
|
310
|
-
end: number;
|
|
311
|
-
reversed: boolean;
|
|
312
|
-
assemblyName: string;
|
|
313
|
-
} | undefined;
|
|
314
|
-
} & {
|
|
315
|
-
setShowCytobands(flag: boolean): void;
|
|
316
|
-
setWidth(newWidth: number): void;
|
|
317
|
-
setError(error: Error | undefined): void;
|
|
318
|
-
toggleHeader(): void;
|
|
319
|
-
toggleHeaderOverview(): void;
|
|
320
|
-
toggleNoTracksActive(): void;
|
|
321
|
-
scrollTo(offsetPx: number): number;
|
|
322
|
-
zoomTo(bpPerPx: number): number;
|
|
323
|
-
setOffsets(left: import("..").BpOffset | undefined, right: import("..").BpOffset | undefined): void;
|
|
324
|
-
setSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[] | undefined, query: string | undefined): void;
|
|
325
|
-
setSequenceDialogOpen(open: boolean): void;
|
|
326
|
-
setNewView(bpPerPx: number, offsetPx: number): void;
|
|
327
|
-
horizontallyFlip(): void;
|
|
328
|
-
showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
|
|
329
|
-
hideTrack(trackId: string): number;
|
|
330
|
-
} & {
|
|
331
|
-
moveTrack(movingTrackId: string, targetTrackId: string): void;
|
|
332
|
-
closeView(): void;
|
|
333
|
-
toggleTrack(trackId: string): void;
|
|
334
|
-
setTrackLabels(setting: "offset" | "hidden" | "overlapping"): void;
|
|
335
|
-
toggleCenterLine(): void;
|
|
336
|
-
setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
|
|
337
|
-
activateTrackSelector(): import("@jbrowse/core/util").Widget;
|
|
338
|
-
navToLocString(locString: string, optAssemblyName?: string | undefined): void;
|
|
339
|
-
navTo(query: import("..").NavLocation): void;
|
|
340
|
-
navToMultiple(locations: import("..").NavLocation[]): void;
|
|
341
|
-
zoomToDisplayedRegions(leftPx: import("..").BpOffset, rightPx: import("..").BpOffset): void;
|
|
342
|
-
getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
|
|
343
|
-
start: number;
|
|
344
|
-
end: number;
|
|
345
|
-
regionNumber?: number | undefined;
|
|
346
|
-
reversed?: boolean | undefined;
|
|
347
|
-
refName: string;
|
|
348
|
-
assemblyName: string;
|
|
349
|
-
key: string;
|
|
350
|
-
offsetPx: number;
|
|
351
|
-
widthPx: number;
|
|
352
|
-
variant?: string | undefined;
|
|
353
|
-
isLeftEndOfDisplayedRegion?: boolean | undefined;
|
|
354
|
-
}[];
|
|
355
|
-
afterDisplayedRegionsSet(cb: Function): void;
|
|
356
|
-
moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
|
|
357
|
-
horizontalScroll(distance: number): number;
|
|
358
|
-
centerAt(bp: number, refName: string, regionIndex: number): void;
|
|
359
|
-
center(): void;
|
|
360
|
-
showAllRegions(): void;
|
|
361
|
-
showAllRegionsInAssembly(assemblyName?: string | undefined): void;
|
|
362
|
-
setDraggingTrackId(idx?: string | undefined): void;
|
|
363
|
-
setScaleFactor(factor: number): void;
|
|
364
|
-
} & {
|
|
365
|
-
slide: (viewWidths: number) => void;
|
|
366
|
-
} & {
|
|
367
|
-
zoom: (targetBpPerPx: number) => void;
|
|
368
|
-
} & {
|
|
369
|
-
readonly canShowCytobands: boolean;
|
|
370
|
-
readonly showCytobands: boolean;
|
|
371
|
-
readonly anyCytobandsExist: boolean;
|
|
372
|
-
readonly cytobandOffset: number;
|
|
373
|
-
} & {
|
|
374
|
-
menuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
375
|
-
} & {
|
|
376
|
-
readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
377
|
-
readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
|
|
378
|
-
readonly roundedDynamicBlocks: {
|
|
379
|
-
start: number;
|
|
380
|
-
end: number;
|
|
381
|
-
regionNumber?: number | undefined;
|
|
382
|
-
reversed?: boolean | undefined;
|
|
383
|
-
refName: string;
|
|
384
|
-
assemblyName: string;
|
|
385
|
-
key: string;
|
|
386
|
-
offsetPx: number;
|
|
387
|
-
widthPx: number;
|
|
388
|
-
variant?: string | undefined;
|
|
389
|
-
isLeftEndOfDisplayedRegion?: boolean | undefined;
|
|
390
|
-
}[];
|
|
391
|
-
readonly visibleLocStrings: string;
|
|
392
|
-
readonly coarseVisibleLocStrings: string;
|
|
393
|
-
} & {
|
|
394
|
-
clearView(): void;
|
|
395
|
-
setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
|
|
396
|
-
afterAttach(): void;
|
|
397
|
-
} & {
|
|
398
|
-
exportSvg(opts?: import("..").ExportSvgOptions): Promise<void>;
|
|
399
|
-
} & {
|
|
400
|
-
rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
|
|
401
|
-
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
|
|
402
|
-
style?: React.CSSProperties | undefined;
|
|
403
|
-
className?: string | undefined;
|
|
404
|
-
} & React.RefAttributes<unknown>>;
|
|
2
|
+
import { LinearGenomeViewModel } from '..';
|
|
3
|
+
declare type LGV = LinearGenomeViewModel;
|
|
4
|
+
interface ScaleBarProps {
|
|
5
|
+
model: LGV;
|
|
6
|
+
style?: React.CSSProperties;
|
|
7
|
+
className?: string;
|
|
8
|
+
}
|
|
9
|
+
declare const _default: React.ForwardRefExoticComponent<ScaleBarProps & React.RefAttributes<HTMLDivElement>>;
|
|
405
10
|
export default _default;
|