@jbrowse/plugin-linear-genome-view 1.7.11 → 2.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (270) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +119 -139
  2. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -0
  3. package/dist/BaseLinearDisplay/components/Block.js +53 -74
  4. package/dist/BaseLinearDisplay/components/Block.js.map +1 -0
  5. package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts +11 -1
  6. package/dist/BaseLinearDisplay/components/LinearBlocks.js +64 -103
  7. package/dist/BaseLinearDisplay/components/LinearBlocks.js.map +1 -0
  8. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +145 -175
  9. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -0
  10. package/dist/BaseLinearDisplay/components/Tooltip.js +109 -116
  11. package/dist/BaseLinearDisplay/components/Tooltip.js.map +1 -0
  12. package/dist/BaseLinearDisplay/index.js +13 -40
  13. package/dist/BaseLinearDisplay/index.js.map +1 -0
  14. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +19 -14
  15. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +605 -684
  16. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -0
  17. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +15 -22
  18. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -0
  19. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +7 -8
  20. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +266 -312
  21. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -0
  22. package/dist/LinearBareDisplay/configSchema.js +11 -17
  23. package/dist/LinearBareDisplay/configSchema.js.map +1 -0
  24. package/dist/LinearBareDisplay/index.js +7 -20
  25. package/dist/LinearBareDisplay/index.js.map +1 -0
  26. package/dist/LinearBareDisplay/model.d.ts +15 -13
  27. package/dist/LinearBareDisplay/model.js +36 -42
  28. package/dist/LinearBareDisplay/model.js.map +1 -0
  29. package/dist/LinearBasicDisplay/components/SetMaxHeight.d.ts +1 -1
  30. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +76 -85
  31. package/dist/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -0
  32. package/dist/LinearBasicDisplay/configSchema.js +15 -23
  33. package/dist/LinearBasicDisplay/configSchema.js.map +1 -0
  34. package/dist/LinearBasicDisplay/index.js +10 -22
  35. package/dist/LinearBasicDisplay/index.js.map +1 -0
  36. package/dist/LinearBasicDisplay/model.d.ts +20 -14
  37. package/dist/LinearBasicDisplay/model.js +180 -159
  38. package/dist/LinearBasicDisplay/model.js.map +1 -0
  39. package/dist/LinearGenomeView/components/CenterLine.d.ts +2 -8
  40. package/dist/LinearGenomeView/components/CenterLine.js +60 -74
  41. package/dist/LinearGenomeView/components/CenterLine.js.map +1 -0
  42. package/dist/LinearGenomeView/components/ExportSvgDialog.js +141 -141
  43. package/dist/LinearGenomeView/components/ExportSvgDialog.js.map +1 -0
  44. package/dist/LinearGenomeView/components/Header.d.ts +1 -0
  45. package/dist/LinearGenomeView/components/Header.js +70 -125
  46. package/dist/LinearGenomeView/components/Header.js.map +1 -0
  47. package/dist/LinearGenomeView/components/HelpDialog.d.ts +0 -1
  48. package/dist/LinearGenomeView/components/HelpDialog.js +62 -44
  49. package/dist/LinearGenomeView/components/HelpDialog.js.map +1 -0
  50. package/dist/LinearGenomeView/components/ImportForm.d.ts +1 -0
  51. package/dist/LinearGenomeView/components/ImportForm.js +222 -289
  52. package/dist/LinearGenomeView/components/ImportForm.js.map +1 -0
  53. package/dist/LinearGenomeView/components/LinearGenomeView.js +64 -124
  54. package/dist/LinearGenomeView/components/LinearGenomeView.js.map +1 -0
  55. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +198 -337
  56. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -0
  57. package/dist/LinearGenomeView/components/MiniControls.js +64 -78
  58. package/dist/LinearGenomeView/components/MiniControls.js.map +1 -0
  59. package/dist/LinearGenomeView/components/OverviewRubberBand.js +226 -293
  60. package/dist/LinearGenomeView/components/OverviewRubberBand.js.map +1 -0
  61. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +3 -3
  62. package/dist/LinearGenomeView/components/OverviewScaleBar.js +275 -370
  63. package/dist/LinearGenomeView/components/OverviewScaleBar.js.map +1 -0
  64. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +1 -1
  65. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +237 -324
  66. package/dist/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -0
  67. package/dist/LinearGenomeView/components/RubberBand.js +229 -296
  68. package/dist/LinearGenomeView/components/RubberBand.js.map +1 -0
  69. package/dist/LinearGenomeView/components/Ruler.js +45 -90
  70. package/dist/LinearGenomeView/components/Ruler.js.map +1 -0
  71. package/dist/LinearGenomeView/components/ScaleBar.d.ts +8 -403
  72. package/dist/LinearGenomeView/components/ScaleBar.js +121 -172
  73. package/dist/LinearGenomeView/components/ScaleBar.js.map +1 -0
  74. package/dist/LinearGenomeView/components/SearchBox.js +155 -166
  75. package/dist/LinearGenomeView/components/SearchBox.js.map +1 -0
  76. package/dist/LinearGenomeView/components/SearchResultsDialog.d.ts +0 -1
  77. package/dist/LinearGenomeView/components/SearchResultsDialog.js +105 -149
  78. package/dist/LinearGenomeView/components/SearchResultsDialog.js.map +1 -0
  79. package/dist/LinearGenomeView/components/SequenceDialog.js +219 -272
  80. package/dist/LinearGenomeView/components/SequenceDialog.js.map +1 -0
  81. package/dist/LinearGenomeView/components/TrackContainer.js +116 -156
  82. package/dist/LinearGenomeView/components/TrackContainer.js.map +1 -0
  83. package/dist/LinearGenomeView/components/TrackLabel.d.ts +6 -42
  84. package/dist/LinearGenomeView/components/TrackLabel.js +115 -134
  85. package/dist/LinearGenomeView/components/TrackLabel.js.map +1 -0
  86. package/dist/LinearGenomeView/components/TracksContainer.d.ts +1 -1
  87. package/dist/LinearGenomeView/components/TracksContainer.js +172 -199
  88. package/dist/LinearGenomeView/components/TracksContainer.js.map +1 -0
  89. package/dist/LinearGenomeView/components/VerticalGuides.d.ts +2 -3
  90. package/dist/LinearGenomeView/components/VerticalGuides.js +66 -104
  91. package/dist/LinearGenomeView/components/VerticalGuides.js.map +1 -0
  92. package/dist/LinearGenomeView/components/ZoomControls.js +72 -87
  93. package/dist/LinearGenomeView/components/ZoomControls.js.map +1 -0
  94. package/dist/LinearGenomeView/components/util.js +94 -71
  95. package/dist/LinearGenomeView/components/util.js.map +1 -0
  96. package/dist/LinearGenomeView/index.d.ts +3 -3
  97. package/dist/LinearGenomeView/index.js +1163 -1414
  98. package/dist/LinearGenomeView/index.js.map +1 -0
  99. package/dist/LinearGenomeView/util.js +76 -83
  100. package/dist/LinearGenomeView/util.js.map +1 -0
  101. package/dist/index.d.ts +98 -48
  102. package/dist/index.js +225 -295
  103. package/dist/index.js.map +1 -0
  104. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.d.ts +9 -0
  105. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js +68 -0
  106. package/esm/BaseLinearDisplay/components/BaseLinearDisplay.js.map +1 -0
  107. package/esm/BaseLinearDisplay/components/Block.d.ts +15 -0
  108. package/esm/BaseLinearDisplay/components/Block.js +46 -0
  109. package/esm/BaseLinearDisplay/components/Block.js.map +1 -0
  110. package/esm/BaseLinearDisplay/components/LinearBlocks.d.ts +22 -0
  111. package/esm/BaseLinearDisplay/components/LinearBlocks.js +62 -0
  112. package/esm/BaseLinearDisplay/components/LinearBlocks.js.map +1 -0
  113. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.d.ts +4 -0
  114. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +113 -0
  115. package/esm/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js.map +1 -0
  116. package/esm/BaseLinearDisplay/components/Tooltip.d.ts +8 -0
  117. package/esm/BaseLinearDisplay/components/Tooltip.js +64 -0
  118. package/esm/BaseLinearDisplay/components/Tooltip.js.map +1 -0
  119. package/esm/BaseLinearDisplay/index.d.ts +5 -0
  120. package/esm/BaseLinearDisplay/index.js +4 -0
  121. package/esm/BaseLinearDisplay/index.js.map +1 -0
  122. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +232 -0
  123. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js +541 -0
  124. package/esm/BaseLinearDisplay/models/BaseLinearDisplayModel.js.map +1 -0
  125. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.d.ts +1 -0
  126. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +14 -0
  127. package/esm/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js.map +1 -0
  128. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +96 -0
  129. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js +225 -0
  130. package/esm/BaseLinearDisplay/models/serverSideRenderedBlock.js.map +1 -0
  131. package/esm/LinearBareDisplay/configSchema.d.ts +2 -0
  132. package/esm/LinearBareDisplay/configSchema.js +9 -0
  133. package/esm/LinearBareDisplay/configSchema.js.map +1 -0
  134. package/esm/LinearBareDisplay/index.d.ts +2 -0
  135. package/esm/LinearBareDisplay/index.js +3 -0
  136. package/esm/LinearBareDisplay/index.js.map +1 -0
  137. package/esm/LinearBareDisplay/model.d.ts +194 -0
  138. package/esm/LinearBareDisplay/model.js +28 -0
  139. package/esm/LinearBareDisplay/model.js.map +1 -0
  140. package/esm/LinearBasicDisplay/components/SetMaxHeight.d.ts +10 -0
  141. package/esm/LinearBasicDisplay/components/SetMaxHeight.js +40 -0
  142. package/esm/LinearBasicDisplay/components/SetMaxHeight.js.map +1 -0
  143. package/esm/LinearBasicDisplay/configSchema.d.ts +2 -0
  144. package/esm/LinearBasicDisplay/configSchema.js +14 -0
  145. package/esm/LinearBasicDisplay/configSchema.js.map +1 -0
  146. package/esm/LinearBasicDisplay/index.d.ts +2 -0
  147. package/esm/LinearBasicDisplay/index.js +3 -0
  148. package/esm/LinearBasicDisplay/index.js.map +1 -0
  149. package/esm/LinearBasicDisplay/model.d.ts +218 -0
  150. package/esm/LinearBasicDisplay/model.js +127 -0
  151. package/esm/LinearBasicDisplay/model.js.map +1 -0
  152. package/esm/LinearGenomeView/components/CenterLine.d.ts +8 -0
  153. package/esm/LinearGenomeView/components/CenterLine.js +40 -0
  154. package/esm/LinearGenomeView/components/CenterLine.js.map +1 -0
  155. package/esm/LinearGenomeView/components/ExportSvgDialog.d.ts +6 -0
  156. package/esm/LinearGenomeView/components/ExportSvgDialog.js +52 -0
  157. package/esm/LinearGenomeView/components/ExportSvgDialog.js.map +1 -0
  158. package/esm/LinearGenomeView/components/Header.d.ts +7 -0
  159. package/esm/LinearGenomeView/components/Header.js +81 -0
  160. package/esm/LinearGenomeView/components/Header.js.map +1 -0
  161. package/esm/LinearGenomeView/components/HelpDialog.d.ts +4 -0
  162. package/esm/LinearGenomeView/components/HelpDialog.js +58 -0
  163. package/esm/LinearGenomeView/components/HelpDialog.js.map +1 -0
  164. package/esm/LinearGenomeView/components/ImportForm.d.ts +7 -0
  165. package/esm/LinearGenomeView/components/ImportForm.js +141 -0
  166. package/esm/LinearGenomeView/components/ImportForm.js.map +1 -0
  167. package/esm/LinearGenomeView/components/LinearGenomeView.d.ts +7 -0
  168. package/esm/LinearGenomeView/components/LinearGenomeView.js +67 -0
  169. package/esm/LinearGenomeView/components/LinearGenomeView.js.map +1 -0
  170. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.d.ts +4 -0
  171. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js +132 -0
  172. package/esm/LinearGenomeView/components/LinearGenomeViewSvg.js.map +1 -0
  173. package/esm/LinearGenomeView/components/MiniControls.d.ts +6 -0
  174. package/esm/LinearGenomeView/components/MiniControls.js +25 -0
  175. package/esm/LinearGenomeView/components/MiniControls.js.map +1 -0
  176. package/esm/LinearGenomeView/components/OverviewRubberBand.d.ts +22 -0
  177. package/esm/LinearGenomeView/components/OverviewRubberBand.js +194 -0
  178. package/esm/LinearGenomeView/components/OverviewRubberBand.js.map +1 -0
  179. package/esm/LinearGenomeView/components/OverviewScaleBar.d.ts +148 -0
  180. package/esm/LinearGenomeView/components/OverviewScaleBar.js +287 -0
  181. package/esm/LinearGenomeView/components/OverviewScaleBar.js.map +1 -0
  182. package/esm/LinearGenomeView/components/RefNameAutocomplete.d.ts +22 -0
  183. package/esm/LinearGenomeView/components/RefNameAutocomplete.js +136 -0
  184. package/esm/LinearGenomeView/components/RefNameAutocomplete.js.map +1 -0
  185. package/esm/LinearGenomeView/components/RubberBand.d.ts +9 -0
  186. package/esm/LinearGenomeView/components/RubberBand.js +198 -0
  187. package/esm/LinearGenomeView/components/RubberBand.js.map +1 -0
  188. package/esm/LinearGenomeView/components/Ruler.d.ts +27 -0
  189. package/esm/LinearGenomeView/components/Ruler.js +50 -0
  190. package/esm/LinearGenomeView/components/Ruler.js.map +1 -0
  191. package/esm/LinearGenomeView/components/ScaleBar.d.ts +10 -0
  192. package/esm/LinearGenomeView/components/ScaleBar.js +112 -0
  193. package/esm/LinearGenomeView/components/ScaleBar.js.map +1 -0
  194. package/esm/LinearGenomeView/components/SearchBox.d.ts +8 -0
  195. package/esm/LinearGenomeView/components/SearchBox.js +94 -0
  196. package/esm/LinearGenomeView/components/SearchBox.js.map +1 -0
  197. package/esm/LinearGenomeView/components/SearchResultsDialog.d.ts +7 -0
  198. package/esm/LinearGenomeView/components/SearchResultsDialog.js +107 -0
  199. package/esm/LinearGenomeView/components/SearchResultsDialog.js.map +1 -0
  200. package/esm/LinearGenomeView/components/SequenceDialog.d.ts +8 -0
  201. package/esm/LinearGenomeView/components/SequenceDialog.js +147 -0
  202. package/esm/LinearGenomeView/components/SequenceDialog.js.map +1 -0
  203. package/esm/LinearGenomeView/components/TrackContainer.d.ts +9 -0
  204. package/esm/LinearGenomeView/components/TrackContainer.js +109 -0
  205. package/esm/LinearGenomeView/components/TrackContainer.js.map +1 -0
  206. package/esm/LinearGenomeView/components/TrackLabel.d.ts +8 -0
  207. package/esm/LinearGenomeView/components/TrackLabel.js +89 -0
  208. package/esm/LinearGenomeView/components/TrackLabel.js.map +1 -0
  209. package/esm/LinearGenomeView/components/TracksContainer.d.ts +10 -0
  210. package/esm/LinearGenomeView/components/TracksContainer.js +142 -0
  211. package/esm/LinearGenomeView/components/TracksContainer.js.map +1 -0
  212. package/esm/LinearGenomeView/components/VerticalGuides.d.ts +8 -0
  213. package/esm/LinearGenomeView/components/VerticalGuides.js +71 -0
  214. package/esm/LinearGenomeView/components/VerticalGuides.js.map +1 -0
  215. package/esm/LinearGenomeView/components/ZoomControls.d.ts +7 -0
  216. package/esm/LinearGenomeView/components/ZoomControls.js +32 -0
  217. package/esm/LinearGenomeView/components/ZoomControls.js.map +1 -0
  218. package/esm/LinearGenomeView/components/util.d.ts +14 -0
  219. package/esm/LinearGenomeView/components/util.js +17 -0
  220. package/esm/LinearGenomeView/components/util.js.map +1 -0
  221. package/esm/LinearGenomeView/index.d.ts +288 -0
  222. package/esm/LinearGenomeView/index.js +1124 -0
  223. package/esm/LinearGenomeView/index.js.map +1 -0
  224. package/esm/LinearGenomeView/util.d.ts +14 -0
  225. package/esm/LinearGenomeView/util.js +62 -0
  226. package/esm/LinearGenomeView/util.js.map +1 -0
  227. package/esm/index.d.ts +615 -0
  228. package/esm/index.js +127 -0
  229. package/esm/index.js.map +1 -0
  230. package/package.json +21 -14
  231. package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +4 -3
  232. package/src/BaseLinearDisplay/components/Block.tsx +5 -5
  233. package/src/BaseLinearDisplay/components/LinearBlocks.tsx +4 -4
  234. package/src/BaseLinearDisplay/components/ServerSideRenderedBlockContent.tsx +7 -8
  235. package/src/BaseLinearDisplay/components/Tooltip.tsx +14 -4
  236. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +6 -4
  237. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +1 -1
  238. package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +10 -7
  239. package/src/LinearBasicDisplay/model.ts +19 -11
  240. package/src/LinearGenomeView/components/CenterLine.tsx +6 -11
  241. package/src/LinearGenomeView/components/ExportSvgDialog.tsx +5 -5
  242. package/src/LinearGenomeView/components/Header.tsx +10 -15
  243. package/src/LinearGenomeView/components/HelpDialog.tsx +5 -5
  244. package/src/LinearGenomeView/components/ImportForm.tsx +6 -12
  245. package/src/LinearGenomeView/components/LinearGenomeView.test.js +16 -6
  246. package/src/LinearGenomeView/components/LinearGenomeView.tsx +4 -3
  247. package/src/LinearGenomeView/components/MiniControls.tsx +29 -40
  248. package/src/LinearGenomeView/components/OverviewRubberBand.tsx +6 -10
  249. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +61 -59
  250. package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +13 -44
  251. package/src/LinearGenomeView/components/RubberBand.tsx +12 -17
  252. package/src/LinearGenomeView/components/Ruler.tsx +5 -11
  253. package/src/LinearGenomeView/components/ScaleBar.tsx +23 -27
  254. package/src/LinearGenomeView/components/SearchBox.tsx +4 -3
  255. package/src/LinearGenomeView/components/SearchResultsDialog.tsx +7 -6
  256. package/src/LinearGenomeView/components/SequenceDialog.tsx +9 -9
  257. package/src/LinearGenomeView/components/TrackContainer.tsx +12 -12
  258. package/src/LinearGenomeView/components/TrackLabel.tsx +21 -31
  259. package/src/LinearGenomeView/components/TracksContainer.tsx +8 -13
  260. package/src/LinearGenomeView/components/VerticalGuides.tsx +9 -11
  261. package/src/LinearGenomeView/components/ZoomControls.tsx +12 -13
  262. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +500 -547
  263. package/src/LinearGenomeView/index.test.ts +1 -0
  264. package/src/LinearGenomeView/index.tsx +47 -62
  265. package/src/index.ts +1 -1
  266. package/dist/LinearBareDisplay/index.test.js +0 -33
  267. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +0 -234
  268. package/dist/LinearGenomeView/components/ScaleBar.test.js +0 -180
  269. package/dist/LinearGenomeView/index.test.js +0 -1187
  270. package/dist/LinearGenomeView/util.test.js +0 -78
@@ -1,174 +1,163 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.default = void 0;
9
-
10
- var _regenerator = _interopRequireDefault(require("@babel/runtime/regenerator"));
11
-
12
- var _slicedToArray2 = _interopRequireDefault(require("@babel/runtime/helpers/slicedToArray"));
13
-
14
- var _asyncToGenerator2 = _interopRequireDefault(require("@babel/runtime/helpers/asyncToGenerator"));
15
-
16
- var _react = _interopRequireDefault(require("react"));
17
-
18
- var _mobxReact = require("mobx-react");
19
-
20
- var _core = require("@material-ui/core");
21
-
22
- var _util = require("@jbrowse/core/util");
23
-
24
- var _RefNameAutocomplete = _interopRequireDefault(require("./RefNameAutocomplete"));
25
-
26
- var _util2 = require("./util");
27
-
28
- var _ = require("..");
29
-
2
+ var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
3
+ function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
4
+ return new (P || (P = Promise))(function (resolve, reject) {
5
+ function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
6
+ function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
7
+ function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
8
+ step((generator = generator.apply(thisArg, _arguments || [])).next());
9
+ });
10
+ };
11
+ var __generator = (this && this.__generator) || function (thisArg, body) {
12
+ var _ = { label: 0, sent: function() { if (t[0] & 1) throw t[1]; return t[1]; }, trys: [], ops: [] }, f, y, t, g;
13
+ return g = { next: verb(0), "throw": verb(1), "return": verb(2) }, typeof Symbol === "function" && (g[Symbol.iterator] = function() { return this; }), g;
14
+ function verb(n) { return function (v) { return step([n, v]); }; }
15
+ function step(op) {
16
+ if (f) throw new TypeError("Generator is already executing.");
17
+ while (_) try {
18
+ if (f = 1, y && (t = op[0] & 2 ? y["return"] : op[0] ? y["throw"] || ((t = y["return"]) && t.call(y), 0) : y.next) && !(t = t.call(y, op[1])).done) return t;
19
+ if (y = 0, t) op = [op[0] & 2, t.value];
20
+ switch (op[0]) {
21
+ case 0: case 1: t = op; break;
22
+ case 4: _.label++; return { value: op[1], done: false };
23
+ case 5: _.label++; y = op[1]; op = [0]; continue;
24
+ case 7: op = _.ops.pop(); _.trys.pop(); continue;
25
+ default:
26
+ if (!(t = _.trys, t = t.length > 0 && t[t.length - 1]) && (op[0] === 6 || op[0] === 2)) { _ = 0; continue; }
27
+ if (op[0] === 3 && (!t || (op[1] > t[0] && op[1] < t[3]))) { _.label = op[1]; break; }
28
+ if (op[0] === 6 && _.label < t[1]) { _.label = t[1]; t = op; break; }
29
+ if (t && _.label < t[2]) { _.label = t[2]; _.ops.push(op); break; }
30
+ if (t[2]) _.ops.pop();
31
+ _.trys.pop(); continue;
32
+ }
33
+ op = body.call(thisArg, _);
34
+ } catch (e) { op = [6, e]; y = 0; } finally { f = t = 0; }
35
+ if (op[0] & 5) throw op[1]; return { value: op[0] ? op[1] : void 0, done: true };
36
+ }
37
+ };
38
+ var __read = (this && this.__read) || function (o, n) {
39
+ var m = typeof Symbol === "function" && o[Symbol.iterator];
40
+ if (!m) return o;
41
+ var i = m.call(o), r, ar = [], e;
42
+ try {
43
+ while ((n === void 0 || n-- > 0) && !(r = i.next()).done) ar.push(r.value);
44
+ }
45
+ catch (error) { e = { error: error }; }
46
+ finally {
47
+ try {
48
+ if (r && !r.done && (m = i["return"])) m.call(i);
49
+ }
50
+ finally { if (e) throw e.error; }
51
+ }
52
+ return ar;
53
+ };
54
+ var __importDefault = (this && this.__importDefault) || function (mod) {
55
+ return (mod && mod.__esModule) ? mod : { "default": mod };
56
+ };
57
+ Object.defineProperty(exports, "__esModule", { value: true });
58
+ var react_1 = __importDefault(require("react"));
59
+ var mobx_react_1 = require("mobx-react");
60
+ var material_1 = require("@mui/material");
61
+ var mui_1 = require("tss-react/mui");
62
+ var util_1 = require("@jbrowse/core/util");
30
63
  // locals
31
- var useStyles = (0, _core.makeStyles)(function () {
32
- return {
64
+ var RefNameAutocomplete_1 = __importDefault(require("./RefNameAutocomplete"));
65
+ var util_2 = require("./util");
66
+ var __1 = require("..");
67
+ var useStyles = (0, mui_1.makeStyles)()(function () { return ({
33
68
  headerRefName: {
34
- minWidth: 100
69
+ minWidth: 100,
70
+ },
71
+ }); });
72
+ function SearchBox(_a) {
73
+ var model = _a.model, showHelp = _a.showHelp;
74
+ var classes = useStyles().classes;
75
+ var theme = (0, material_1.useTheme)();
76
+ var session = (0, util_1.getSession)(model);
77
+ var textSearchManager = session.textSearchManager, assemblyManager = session.assemblyManager;
78
+ var assemblyNames = model.assemblyNames, rankSearchResults = model.rankSearchResults;
79
+ var assemblyName = assemblyNames[0];
80
+ var assembly = assemblyManager.get(assemblyName);
81
+ var searchScope = model.searchScope(assemblyName);
82
+ // gets a string as input, or use stored option results from previous query,
83
+ // then re-query and
84
+ // 1) if it has multiple results: pop a dialog
85
+ // 2) if it's a single result navigate to it
86
+ // 3) else assume it's a locstring and navigate to it
87
+ function handleSelectedRegion(option) {
88
+ return __awaiter(this, void 0, void 0, function () {
89
+ var trackId, location, label, _a, ref, rest, allRefs, results, e_1;
90
+ return __generator(this, function (_b) {
91
+ switch (_b.label) {
92
+ case 0:
93
+ trackId = option.getTrackId();
94
+ location = option.getLocation();
95
+ label = option.getLabel();
96
+ _a = __read(location.split(':'), 2), ref = _a[0], rest = _a[1];
97
+ allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
98
+ _b.label = 1;
99
+ case 1:
100
+ _b.trys.push([1, 5, , 6]);
101
+ if (!(allRefs.includes(location) ||
102
+ (allRefs.includes(ref) &&
103
+ rest !== undefined &&
104
+ !Number.isNaN(parseInt(rest, 10))))) return [3 /*break*/, 2];
105
+ model.navToLocString(location, assemblyName);
106
+ return [3 /*break*/, 4];
107
+ case 2: return [4 /*yield*/, (0, util_2.fetchResults)({
108
+ queryString: label,
109
+ searchType: 'exact',
110
+ searchScope: searchScope,
111
+ rankSearchResults: rankSearchResults,
112
+ textSearchManager: textSearchManager,
113
+ assembly: assembly,
114
+ })];
115
+ case 3:
116
+ results = _b.sent();
117
+ if (results.length > 1) {
118
+ model.setSearchResults(results, label.toLowerCase());
119
+ return [2 /*return*/];
120
+ }
121
+ else if (results.length === 1) {
122
+ location = results[0].getLocation();
123
+ trackId = results[0].getTrackId();
124
+ }
125
+ model.navToLocString(location, assemblyName);
126
+ if (trackId) {
127
+ model.showTrack(trackId);
128
+ }
129
+ _b.label = 4;
130
+ case 4: return [3 /*break*/, 6];
131
+ case 5:
132
+ e_1 = _b.sent();
133
+ console.error(e_1);
134
+ session.notify("".concat(e_1), 'warning');
135
+ return [3 /*break*/, 6];
136
+ case 6: return [2 /*return*/];
137
+ }
138
+ });
139
+ });
35
140
  }
36
- };
37
- });
38
-
39
- function SearchBox(_ref) {
40
- var model = _ref.model,
41
- showHelp = _ref.showHelp;
42
- var classes = useStyles();
43
- var theme = (0, _core.useTheme)();
44
- var session = (0, _util.getSession)(model);
45
- var textSearchManager = session.textSearchManager,
46
- assemblyManager = session.assemblyManager;
47
- var assemblyNames = model.assemblyNames,
48
- rankSearchResults = model.rankSearchResults;
49
- var assemblyName = assemblyNames[0];
50
- var assembly = assemblyManager.get(assemblyName);
51
- var searchScope = model.searchScope(assemblyName); // gets a string as input, or use stored option results from previous query,
52
- // then re-query and
53
- // 1) if it has multiple results: pop a dialog
54
- // 2) if it's a single result navigate to it
55
- // 3) else assume it's a locstring and navigate to it
56
-
57
- function handleSelectedRegion(_x) {
58
- return _handleSelectedRegion.apply(this, arguments);
59
- }
60
-
61
- function _handleSelectedRegion() {
62
- _handleSelectedRegion = (0, _asyncToGenerator2.default)( /*#__PURE__*/_regenerator.default.mark(function _callee(option) {
63
- var trackId, location, label, _location$split, _location$split2, ref, rest, allRefs, results;
64
-
65
- return _regenerator.default.wrap(function _callee$(_context) {
66
- while (1) {
67
- switch (_context.prev = _context.next) {
68
- case 0:
69
- trackId = option.getTrackId();
70
- location = option.getLocation();
71
- label = option.getLabel();
72
- _location$split = location.split(':'), _location$split2 = (0, _slicedToArray2.default)(_location$split, 2), ref = _location$split2[0], rest = _location$split2[1];
73
- allRefs = (assembly === null || assembly === void 0 ? void 0 : assembly.allRefNames) || [];
74
- _context.prev = 5;
75
-
76
- if (!(allRefs.includes(location) || allRefs.includes(ref) && rest !== undefined && !Number.isNaN(parseInt(rest, 10)))) {
77
- _context.next = 10;
78
- break;
79
- }
80
-
81
- model.navToLocString(location, assemblyName);
82
- _context.next = 21;
83
- break;
84
-
85
- case 10:
86
- _context.next = 12;
87
- return (0, _util2.fetchResults)({
88
- queryString: label,
89
- searchType: 'exact',
141
+ return (react_1.default.createElement(RefNameAutocomplete_1.default, { showHelp: showHelp, onSelect: handleSelectedRegion, assemblyName: assemblyName, fetchResults: function (queryString) {
142
+ return (0, util_2.fetchResults)({
143
+ queryString: queryString,
90
144
  searchScope: searchScope,
91
145
  rankSearchResults: rankSearchResults,
92
146
  textSearchManager: textSearchManager,
93
- assembly: assembly
94
- });
95
-
96
- case 12:
97
- results = _context.sent;
98
-
99
- if (!(results.length > 1)) {
100
- _context.next = 18;
101
- break;
102
- }
103
-
104
- model.setSearchResults(results, label.toLowerCase());
105
- return _context.abrupt("return");
106
-
107
- case 18:
108
- if (results.length === 1) {
109
- location = results[0].getLocation();
110
- trackId = results[0].getTrackId();
111
- }
112
-
113
- case 19:
114
- model.navToLocString(location, assemblyName);
115
-
116
- if (trackId) {
117
- model.showTrack(trackId);
118
- }
119
-
120
- case 21:
121
- _context.next = 27;
122
- break;
123
-
124
- case 23:
125
- _context.prev = 23;
126
- _context.t0 = _context["catch"](5);
127
- console.error(_context.t0);
128
- session.notify("".concat(_context.t0), 'warning');
129
-
130
- case 27:
131
- case "end":
132
- return _context.stop();
133
- }
134
- }
135
- }, _callee, null, [[5, 23]]);
136
- }));
137
- return _handleSelectedRegion.apply(this, arguments);
138
- }
139
-
140
- return /*#__PURE__*/_react.default.createElement(_RefNameAutocomplete.default, {
141
- showHelp: showHelp,
142
- onSelect: handleSelectedRegion,
143
- assemblyName: assemblyName,
144
- fetchResults: function fetchResults(queryString) {
145
- return (0, _util2.fetchResults)({
146
- queryString: queryString,
147
- searchScope: searchScope,
148
- rankSearchResults: rankSearchResults,
149
- textSearchManager: textSearchManager,
150
- assembly: assembly
151
- });
152
- },
153
- model: model,
154
- TextFieldProps: {
155
- variant: 'outlined',
156
- className: classes.headerRefName,
157
- style: {
158
- margin: _.SPACING,
159
- minWidth: '175px'
160
- },
161
- InputProps: {
162
- style: {
163
- padding: 0,
164
- height: _.WIDGET_HEIGHT,
165
- background: (0, _core.alpha)(theme.palette.background.paper, 0.8)
166
- }
167
- }
168
- }
169
- });
147
+ assembly: assembly,
148
+ });
149
+ }, model: model, TextFieldProps: {
150
+ variant: 'outlined',
151
+ className: classes.headerRefName,
152
+ style: { margin: __1.SPACING, minWidth: '175px' },
153
+ InputProps: {
154
+ style: {
155
+ padding: 0,
156
+ height: __1.WIDGET_HEIGHT,
157
+ background: (0, material_1.alpha)(theme.palette.background.paper, 0.8),
158
+ },
159
+ },
160
+ } }));
170
161
  }
171
-
172
- var _default = (0, _mobxReact.observer)(SearchBox);
173
-
174
- exports.default = _default;
162
+ exports.default = (0, mobx_react_1.observer)(SearchBox);
163
+ //# sourceMappingURL=SearchBox.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"SearchBox.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchBox.tsx"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;AAAA,gDAAyB;AACzB,yCAAqC;AACrC,0CAA+C;AAC/C,qCAA0C;AAE1C,2CAA+C;AAE/C,SAAS;AACT,8EAAuD;AACvD,+BAAqC;AACrC,wBAAkE;AAElE,IAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,cAAM,OAAA,CAAC;IACpC,aAAa,EAAE;QACb,QAAQ,EAAE,GAAG;KACd;CACF,CAAC,EAJmC,CAInC,CAAC,CAAA;AAEH,SAAS,SAAS,CAAC,EAMlB;QALC,KAAK,WAAA,EACL,QAAQ,cAAA;IAKA,IAAA,OAAO,GAAK,SAAS,EAAE,QAAhB,CAAgB;IAC/B,IAAM,KAAK,GAAG,IAAA,mBAAQ,GAAE,CAAA;IACxB,IAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IAEzB,IAAA,iBAAiB,GAAsB,OAAO,kBAA7B,EAAE,eAAe,GAAK,OAAO,gBAAZ,CAAY;IAC9C,IAAA,aAAa,GAAwB,KAAK,cAA7B,EAAE,iBAAiB,GAAK,KAAK,kBAAV,CAAU;IAClD,IAAM,YAAY,GAAG,aAAa,CAAC,CAAC,CAAC,CAAA;IACrC,IAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAM,WAAW,GAAG,KAAK,CAAC,WAAW,CAAC,YAAY,CAAC,CAAA;IAEnD,4EAA4E;IAC5E,oBAAoB;IACpB,8CAA8C;IAC9C,4CAA4C;IAC5C,qDAAqD;IACrD,SAAe,oBAAoB,CAAC,MAAkB;;;;;;wBAChD,OAAO,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;wBAC7B,QAAQ,GAAG,MAAM,CAAC,WAAW,EAAE,CAAA;wBAC7B,KAAK,GAAG,MAAM,CAAC,QAAQ,EAAE,CAAA;wBACzB,KAAA,OAAc,QAAQ,CAAC,KAAK,CAAC,GAAG,CAAC,IAAA,EAAhC,GAAG,QAAA,EAAE,IAAI,QAAA,CAAuB;wBACjC,OAAO,GAAG,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,WAAW,KAAI,EAAE,CAAA;;;;6BAOvC,CAAA,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAC;4BAC1B,CAAC,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAC;gCACpB,IAAI,KAAK,SAAS;gCAClB,CAAC,MAAM,CAAC,KAAK,CAAC,QAAQ,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC,CAAC,CAAA,EAHpC,wBAGoC;wBAEpC,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;;4BAE5B,qBAAM,IAAA,mBAAY,EAAC;4BACjC,WAAW,EAAE,KAAK;4BAClB,UAAU,EAAE,OAAO;4BACnB,WAAW,aAAA;4BACX,iBAAiB,mBAAA;4BACjB,iBAAiB,mBAAA;4BACjB,QAAQ,UAAA;yBACT,CAAC,EAAA;;wBAPI,OAAO,GAAG,SAOd;wBACF,IAAI,OAAO,CAAC,MAAM,GAAG,CAAC,EAAE;4BACtB,KAAK,CAAC,gBAAgB,CAAC,OAAO,EAAE,KAAK,CAAC,WAAW,EAAE,CAAC,CAAA;4BACpD,sBAAM;yBACP;6BAAM,IAAI,OAAO,CAAC,MAAM,KAAK,CAAC,EAAE;4BAC/B,QAAQ,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,CAAA;4BACnC,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,UAAU,EAAE,CAAA;yBAClC;wBAED,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;wBAC5C,IAAI,OAAO,EAAE;4BACX,KAAK,CAAC,SAAS,CAAC,OAAO,CAAC,CAAA;yBACzB;;;;;wBAGH,OAAO,CAAC,KAAK,CAAC,GAAC,CAAC,CAAA;wBAChB,OAAO,CAAC,MAAM,CAAC,UAAG,GAAC,CAAE,EAAE,SAAS,CAAC,CAAA;;;;;;KAEpC;IACD,OAAO,CACL,8BAAC,6BAAmB,IAClB,QAAQ,EAAE,QAAQ,EAClB,QAAQ,EAAE,oBAAoB,EAC9B,YAAY,EAAE,YAAY,EAC1B,YAAY,EAAE,UAAA,WAAW;YACvB,OAAA,IAAA,mBAAY,EAAC;gBACX,WAAW,aAAA;gBACX,WAAW,aAAA;gBACX,iBAAiB,mBAAA;gBACjB,iBAAiB,mBAAA;gBACjB,QAAQ,UAAA;aACT,CAAC;QANF,CAME,EAEJ,KAAK,EAAE,KAAK,EACZ,cAAc,EAAE;YACd,OAAO,EAAE,UAAU;YACnB,SAAS,EAAE,OAAO,CAAC,aAAa;YAChC,KAAK,EAAE,EAAE,MAAM,EAAE,WAAO,EAAE,QAAQ,EAAE,OAAO,EAAE;YAC7C,UAAU,EAAE;gBACV,KAAK,EAAE;oBACL,OAAO,EAAE,CAAC;oBACV,MAAM,EAAE,iBAAa;oBACrB,UAAU,EAAE,IAAA,gBAAK,EAAC,KAAK,CAAC,OAAO,CAAC,UAAU,CAAC,KAAK,EAAE,GAAG,CAAC;iBACvD;aACF;SACF,GACD,CACH,CAAA;AACH,CAAC;AAED,kBAAe,IAAA,qBAAQ,EAAC,SAAS,CAAC,CAAA"}
@@ -1,6 +1,5 @@
1
1
  /// <reference types="react" />
2
2
  import { LinearGenomeViewModel } from '../..';
3
- export declare const useStyles: (props?: any) => import("@material-ui/styles").ClassNameMap<"dialogContent" | "closeButton">;
4
3
  export default function SearchResultsDialog({ model, optAssemblyName, handleClose, }: {
5
4
  model: LinearGenomeViewModel;
6
5
  optAssemblyName?: string;
@@ -1,158 +1,114 @@
1
1
  "use strict";
2
-
3
- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
4
-
5
- Object.defineProperty(exports, "__esModule", {
6
- value: true
7
- });
8
- exports.default = SearchResultsDialog;
9
- exports.useStyles = void 0;
10
-
11
- var _react = _interopRequireDefault(require("react"));
12
-
13
- var _mobxStateTree = require("mobx-state-tree");
14
-
15
- var _util = require("@jbrowse/core/util");
16
-
17
- var _core = require("@material-ui/core");
18
-
19
- var _Close = _interopRequireDefault(require("@material-ui/icons/Close"));
20
-
21
- var useStyles = (0, _core.makeStyles)(function (theme) {
22
- return {
2
+ var __importDefault = (this && this.__importDefault) || function (mod) {
3
+ return (mod && mod.__esModule) ? mod : { "default": mod };
4
+ };
5
+ Object.defineProperty(exports, "__esModule", { value: true });
6
+ var react_1 = __importDefault(require("react"));
7
+ var mui_1 = require("tss-react/mui");
8
+ var mobx_state_tree_1 = require("mobx-state-tree");
9
+ var util_1 = require("@jbrowse/core/util");
10
+ var material_1 = require("@mui/material");
11
+ var Close_1 = __importDefault(require("@mui/icons-material/Close"));
12
+ var useStyles = (0, mui_1.makeStyles)()(function (theme) { return ({
23
13
  dialogContent: {
24
- width: '80em'
14
+ width: '80em',
25
15
  },
26
16
  closeButton: {
27
- position: 'absolute',
28
- right: theme.spacing(1),
29
- top: theme.spacing(1),
30
- color: theme.palette.grey[500]
17
+ position: 'absolute',
18
+ right: theme.spacing(1),
19
+ top: theme.spacing(1),
20
+ color: theme.palette.grey[500],
21
+ },
22
+ }); });
23
+ function SearchResultsDialog(_a) {
24
+ var _b, _c;
25
+ var model = _a.model, optAssemblyName = _a.optAssemblyName, handleClose = _a.handleClose;
26
+ var classes = useStyles().classes;
27
+ var session = (0, util_1.getSession)(model);
28
+ var pluginManager = (0, mobx_state_tree_1.getEnv)(session).pluginManager;
29
+ var assemblyManager = session.assemblyManager;
30
+ var assemblyName = optAssemblyName;
31
+ if (model.displayedRegions.length > 0) {
32
+ assemblyName = (_b = model.displayedRegions[0]) === null || _b === void 0 ? void 0 : _b.assemblyName;
31
33
  }
32
- };
33
- });
34
- exports.useStyles = useStyles;
35
-
36
- function SearchResultsDialog(_ref) {
37
- var _model$searchResults;
38
-
39
- var model = _ref.model,
40
- optAssemblyName = _ref.optAssemblyName,
41
- handleClose = _ref.handleClose;
42
- var classes = useStyles();
43
- var session = (0, _util.getSession)(model);
44
-
45
- var _getEnv = (0, _mobxStateTree.getEnv)(session),
46
- pluginManager = _getEnv.pluginManager;
47
-
48
- var assemblyManager = session.assemblyManager;
49
- var assemblyName = optAssemblyName;
50
-
51
- if (model.displayedRegions.length > 0) {
52
- var _model$displayedRegio;
53
-
54
- assemblyName = (_model$displayedRegio = model.displayedRegions[0]) === null || _model$displayedRegio === void 0 ? void 0 : _model$displayedRegio.assemblyName;
55
- }
56
-
57
- if (!assemblyName) {
58
- throw new Error("Assembly name not found");
59
- }
60
-
61
- var assembly = assemblyManager.get(assemblyName);
62
-
63
- if (!assembly) {
64
- throw new Error("assembly ".concat(assemblyName, " not found"));
65
- }
66
-
67
- if (!assembly.regions) {
68
- throw new Error("assembly ".concat(assemblyName, " regions not loaded"));
69
- }
70
-
71
- var assemblyRegions = assembly.regions;
72
-
73
- function handleClick(location) {
74
- try {
75
- var newRegion = assemblyRegions.find(function (region) {
76
- return location === region.refName;
77
- });
78
-
79
- if (newRegion) {
80
- model.setDisplayedRegions([newRegion]); // we use showAllRegions after setDisplayedRegions to make the entire
81
- // region visible, xref #1703
82
-
83
- model.showAllRegions();
84
- } else {
85
- model.navToLocString(location, assemblyName);
86
- }
87
- } catch (e) {
88
- console.warn(e);
89
- session.notify("".concat(e), 'warning');
34
+ if (!assemblyName) {
35
+ throw new Error("Assembly name not found");
90
36
  }
91
- }
92
-
93
- function getTrackName(trackId) {
94
- if (trackId) {
95
- var trackConfigSchema = pluginManager.pluggableConfigSchemaType('track');
96
- var configuration = (0, _mobxStateTree.resolveIdentifier)(trackConfigSchema, (0, _mobxStateTree.getRoot)(model), trackId);
97
-
98
- if (configuration) {
99
- var _configuration$name;
100
-
101
- return (_configuration$name = configuration.name) === null || _configuration$name === void 0 ? void 0 : _configuration$name.value;
102
- }
37
+ var assembly = assemblyManager.get(assemblyName);
38
+ if (!assembly) {
39
+ throw new Error("assembly ".concat(assemblyName, " not found"));
103
40
  }
104
-
105
- return '';
106
- }
107
-
108
- return /*#__PURE__*/_react.default.createElement(_core.Dialog, {
109
- open: true,
110
- maxWidth: "xl",
111
- onClose: handleClose
112
- }, /*#__PURE__*/_react.default.createElement(_core.DialogTitle, null, "Search results", handleClose ? /*#__PURE__*/_react.default.createElement(_core.IconButton, {
113
- "data-testid": "close-resultsDialog",
114
- className: classes.closeButton,
115
- onClick: function onClick() {
116
- handleClose();
41
+ if (!assembly.regions) {
42
+ throw new Error("assembly ".concat(assemblyName, " regions not loaded"));
117
43
  }
118
- }, /*#__PURE__*/_react.default.createElement(_Close.default, null)) : null), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogContent, null, !((_model$searchResults = model.searchResults) !== null && _model$searchResults !== void 0 && _model$searchResults.length) ? /*#__PURE__*/_react.default.createElement(_core.Typography, null, "No results found for ", /*#__PURE__*/_react.default.createElement("b", null, model.searchQuery)) : /*#__PURE__*/_react.default.createElement(_react.default.Fragment, null, /*#__PURE__*/_react.default.createElement(_core.Typography, null, "Showing results for ", /*#__PURE__*/_react.default.createElement("b", null, model.searchQuery)), /*#__PURE__*/_react.default.createElement(_core.TableContainer, {
119
- component: _core.Paper
120
- }, /*#__PURE__*/_react.default.createElement(_core.Table, null, /*#__PURE__*/_react.default.createElement(_core.TableHead, null, /*#__PURE__*/_react.default.createElement(_core.TableRow, null, /*#__PURE__*/_react.default.createElement(_core.TableCell, null, "Name"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
121
- align: "right"
122
- }, "Location"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
123
- align: "right"
124
- }, "Track"), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
125
- align: "right"
126
- }))), /*#__PURE__*/_react.default.createElement(_core.TableBody, null, model.searchResults.map(function (result) {
127
- return /*#__PURE__*/_react.default.createElement(_core.TableRow, {
128
- key: "".concat(result.getId())
129
- }, /*#__PURE__*/_react.default.createElement(_core.TableCell, {
130
- component: "th",
131
- scope: "row"
132
- }, result.getLabel()), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
133
- align: "right"
134
- }, result.getLocation()), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
135
- align: "right"
136
- }, getTrackName(result.getTrackId()) || 'N/A'), /*#__PURE__*/_react.default.createElement(_core.TableCell, {
137
- align: "right"
138
- }, /*#__PURE__*/_react.default.createElement(_core.Button, {
139
- onClick: function onClick() {
140
- handleClick(result.getLocation());
141
- var resultTrackId = result.getTrackId();
142
-
143
- if (resultTrackId) {
144
- model.showTrack(resultTrackId);
44
+ var assemblyRegions = assembly.regions;
45
+ function handleClick(location) {
46
+ try {
47
+ var newRegion = assemblyRegions.find(function (region) { return location === region.refName; });
48
+ if (newRegion) {
49
+ model.setDisplayedRegions([newRegion]);
50
+ // we use showAllRegions after setDisplayedRegions to make the entire
51
+ // region visible, xref #1703
52
+ model.showAllRegions();
53
+ }
54
+ else {
55
+ model.navToLocString(location, assemblyName);
56
+ }
145
57
  }
146
-
147
- handleClose();
148
- },
149
- color: "primary",
150
- variant: "contained"
151
- }, "Go")));
152
- })))))), /*#__PURE__*/_react.default.createElement(_core.Divider, null), /*#__PURE__*/_react.default.createElement(_core.DialogActions, null, /*#__PURE__*/_react.default.createElement(_core.Button, {
153
- onClick: function onClick() {
154
- return handleClose();
155
- },
156
- color: "primary"
157
- }, "Cancel")));
158
- }
58
+ catch (e) {
59
+ console.warn(e);
60
+ session.notify("".concat(e), 'warning');
61
+ }
62
+ }
63
+ function getTrackName(trackId) {
64
+ var _a;
65
+ if (trackId) {
66
+ var trackConfigSchema = pluginManager.pluggableConfigSchemaType('track');
67
+ var configuration = (0, mobx_state_tree_1.resolveIdentifier)(trackConfigSchema, (0, mobx_state_tree_1.getRoot)(model), trackId);
68
+ if (configuration) {
69
+ return (_a = configuration.name) === null || _a === void 0 ? void 0 : _a.value;
70
+ }
71
+ }
72
+ return '';
73
+ }
74
+ return (react_1.default.createElement(material_1.Dialog, { open: true, maxWidth: "xl", onClose: handleClose },
75
+ react_1.default.createElement(material_1.DialogTitle, null,
76
+ "Search results",
77
+ handleClose ? (react_1.default.createElement(material_1.IconButton, { "data-testid": "close-resultsDialog", className: classes.closeButton, onClick: function () {
78
+ handleClose();
79
+ }, size: "large" },
80
+ react_1.default.createElement(Close_1.default, null))) : null),
81
+ react_1.default.createElement(material_1.Divider, null),
82
+ react_1.default.createElement(material_1.DialogContent, null, !((_c = model.searchResults) === null || _c === void 0 ? void 0 : _c.length) ? (react_1.default.createElement(material_1.Typography, null,
83
+ "No results found for ",
84
+ react_1.default.createElement("b", null, model.searchQuery))) : (react_1.default.createElement(react_1.default.Fragment, null,
85
+ react_1.default.createElement(material_1.Typography, null,
86
+ "Showing results for ",
87
+ react_1.default.createElement("b", null, model.searchQuery)),
88
+ react_1.default.createElement(material_1.TableContainer, { component: material_1.Paper },
89
+ react_1.default.createElement(material_1.Table, null,
90
+ react_1.default.createElement(material_1.TableHead, null,
91
+ react_1.default.createElement(material_1.TableRow, null,
92
+ react_1.default.createElement(material_1.TableCell, null, "Name"),
93
+ react_1.default.createElement(material_1.TableCell, { align: "right" }, "Location"),
94
+ react_1.default.createElement(material_1.TableCell, { align: "right" }, "Track"),
95
+ react_1.default.createElement(material_1.TableCell, { align: "right" }))),
96
+ react_1.default.createElement(material_1.TableBody, null, model.searchResults.map(function (result) { return (react_1.default.createElement(material_1.TableRow, { key: "".concat(result.getId()) },
97
+ react_1.default.createElement(material_1.TableCell, { component: "th", scope: "row" }, result.getLabel()),
98
+ react_1.default.createElement(material_1.TableCell, { align: "right" }, result.getLocation()),
99
+ react_1.default.createElement(material_1.TableCell, { align: "right" }, getTrackName(result.getTrackId()) || 'N/A'),
100
+ react_1.default.createElement(material_1.TableCell, { align: "right" },
101
+ react_1.default.createElement(material_1.Button, { onClick: function () {
102
+ handleClick(result.getLocation());
103
+ var resultTrackId = result.getTrackId();
104
+ if (resultTrackId) {
105
+ model.showTrack(resultTrackId);
106
+ }
107
+ handleClose();
108
+ }, color: "primary", variant: "contained" }, "Go")))); }))))))),
109
+ react_1.default.createElement(material_1.Divider, null),
110
+ react_1.default.createElement(material_1.DialogActions, null,
111
+ react_1.default.createElement(material_1.Button, { onClick: function () { return handleClose(); }, color: "primary" }, "Cancel"))));
112
+ }
113
+ exports.default = SearchResultsDialog;
114
+ //# sourceMappingURL=SearchResultsDialog.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"SearchResultsDialog.js","sourceRoot":"","sources":["../../../src/LinearGenomeView/components/SearchResultsDialog.tsx"],"names":[],"mappings":";;;;;AAAA,gDAAyB;AACzB,qCAA0C;AAC1C,mDAAoE;AACpE,2CAA+C;AAC/C,0CAgBsB;AACtB,oEAAiD;AAGjD,IAAM,SAAS,GAAG,IAAA,gBAAU,GAAE,CAAC,UAAA,KAAK,IAAI,OAAA,CAAC;IACvC,aAAa,EAAE;QACb,KAAK,EAAE,MAAM;KACd;IACD,WAAW,EAAE;QACX,QAAQ,EAAE,UAAU;QACpB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACvB,GAAG,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC;QACrB,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,GAAG,CAAC;KAC/B;CACF,CAAC,EAVsC,CAUtC,CAAC,CAAA;AAEH,SAAwB,mBAAmB,CAAC,EAQ3C;;QAPC,KAAK,WAAA,EACL,eAAe,qBAAA,EACf,WAAW,iBAAA;IAMH,IAAA,OAAO,GAAK,SAAS,EAAE,QAAhB,CAAgB;IAC/B,IAAM,OAAO,GAAG,IAAA,iBAAU,EAAC,KAAK,CAAC,CAAA;IACzB,IAAA,aAAa,GAAK,IAAA,wBAAM,EAAC,OAAO,CAAC,cAApB,CAAoB;IACjC,IAAA,eAAe,GAAK,OAAO,gBAAZ,CAAY;IACnC,IAAI,YAAY,GAAG,eAAe,CAAA;IAClC,IAAI,KAAK,CAAC,gBAAgB,CAAC,MAAM,GAAG,CAAC,EAAE;QACrC,YAAY,GAAG,MAAA,KAAK,CAAC,gBAAgB,CAAC,CAAC,CAAC,0CAAE,YAAY,CAAA;KACvD;IACD,IAAI,CAAC,YAAY,EAAE;QACjB,MAAM,IAAI,KAAK,CAAC,yBAAyB,CAAC,CAAA;KAC3C;IACD,IAAM,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,YAAY,CAAC,CAAA;IAClD,IAAI,CAAC,QAAQ,EAAE;QACb,MAAM,IAAI,KAAK,CAAC,mBAAY,YAAY,eAAY,CAAC,CAAA;KACtD;IACD,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE;QACrB,MAAM,IAAI,KAAK,CAAC,mBAAY,YAAY,wBAAqB,CAAC,CAAA;KAC/D;IACD,IAAM,eAAe,GAAG,QAAQ,CAAC,OAAO,CAAA;IAExC,SAAS,WAAW,CAAC,QAAgB;QACnC,IAAI;YACF,IAAM,SAAS,GAAG,eAAe,CAAC,IAAI,CACpC,UAAA,MAAM,IAAI,OAAA,QAAQ,KAAK,MAAM,CAAC,OAAO,EAA3B,CAA2B,CACtC,CAAA;YACD,IAAI,SAAS,EAAE;gBACb,KAAK,CAAC,mBAAmB,CAAC,CAAC,SAAS,CAAC,CAAC,CAAA;gBACtC,qEAAqE;gBACrE,6BAA6B;gBAC7B,KAAK,CAAC,cAAc,EAAE,CAAA;aACvB;iBAAM;gBACL,KAAK,CAAC,cAAc,CAAC,QAAQ,EAAE,YAAY,CAAC,CAAA;aAC7C;SACF;QAAC,OAAO,CAAC,EAAE;YACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;YACf,OAAO,CAAC,MAAM,CAAC,UAAG,CAAC,CAAE,EAAE,SAAS,CAAC,CAAA;SAClC;IACH,CAAC;IAED,SAAS,YAAY,CAAC,OAA2B;;QAC/C,IAAI,OAAO,EAAE;YACX,IAAM,iBAAiB,GAAG,aAAa,CAAC,yBAAyB,CAAC,OAAO,CAAC,CAAA;YAC1E,IAAM,aAAa,GAAG,IAAA,mCAAiB,EACrC,iBAAiB,EACjB,IAAA,yBAAO,EAAC,KAAK,CAAC,EACd,OAAO,CACR,CAAA;YACD,IAAI,aAAa,EAAE;gBACjB,OAAO,MAAA,aAAa,CAAC,IAAI,0CAAE,KAAK,CAAA;aACjC;SACF;QACD,OAAO,EAAE,CAAA;IACX,CAAC;IAED,OAAO,CACL,8BAAC,iBAAM,IAAC,IAAI,QAAC,QAAQ,EAAC,IAAI,EAAC,OAAO,EAAE,WAAW;QAC7C,8BAAC,sBAAW;;YAET,WAAW,CAAC,CAAC,CAAC,CACb,8BAAC,qBAAU,mBACG,qBAAqB,EACjC,SAAS,EAAE,OAAO,CAAC,WAAW,EAC9B,OAAO,EAAE;oBACP,WAAW,EAAE,CAAA;gBACf,CAAC,EACD,IAAI,EAAC,OAAO;gBAEZ,8BAAC,eAAS,OAAG,CACF,CACd,CAAC,CAAC,CAAC,IAAI,CACI;QACd,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa,QACX,CAAC,CAAA,MAAA,KAAK,CAAC,aAAa,0CAAE,MAAM,CAAA,CAAC,CAAC,CAAC,CAC9B,8BAAC,qBAAU;;YACY,yCAAI,KAAK,CAAC,WAAW,CAAK,CACpC,CACd,CAAC,CAAC,CAAC,CACF;YACE,8BAAC,qBAAU;;gBACW,yCAAI,KAAK,CAAC,WAAW,CAAK,CACnC;YACb,8BAAC,yBAAc,IAAC,SAAS,EAAE,gBAAK;gBAC9B,8BAAC,gBAAK;oBACJ,8BAAC,oBAAS;wBACR,8BAAC,mBAAQ;4BACP,8BAAC,oBAAS,eAAiB;4BAC3B,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,eAAqB;4BAC7C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,YAAkB;4BAC1C,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,GAAG,CAClB,CACD;oBACZ,8BAAC,oBAAS,QACP,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,UAAA,MAAM,IAAI,OAAA,CACjC,8BAAC,mBAAQ,IAAC,GAAG,EAAE,UAAG,MAAM,CAAC,KAAK,EAAE,CAAE;wBAChC,8BAAC,oBAAS,IAAC,SAAS,EAAC,IAAI,EAAC,KAAK,EAAC,KAAK,IAClC,MAAM,CAAC,QAAQ,EAAE,CACR;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,MAAM,CAAC,WAAW,EAAE,CACX;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO,IACrB,YAAY,CAAC,MAAM,CAAC,UAAU,EAAE,CAAC,IAAI,KAAK,CACjC;wBACZ,8BAAC,oBAAS,IAAC,KAAK,EAAC,OAAO;4BACtB,8BAAC,iBAAM,IACL,OAAO,EAAE;oCACP,WAAW,CAAC,MAAM,CAAC,WAAW,EAAE,CAAC,CAAA;oCACjC,IAAM,aAAa,GAAG,MAAM,CAAC,UAAU,EAAE,CAAA;oCACzC,IAAI,aAAa,EAAE;wCACjB,KAAK,CAAC,SAAS,CAAC,aAAa,CAAC,CAAA;qCAC/B;oCACD,WAAW,EAAE,CAAA;gCACf,CAAC,EACD,KAAK,EAAC,SAAS,EACf,OAAO,EAAC,WAAW,SAGZ,CACC,CACH,CACZ,EA5BkC,CA4BlC,CAAC,CACQ,CACN,CACO,CAChB,CACJ,CACa;QAChB,8BAAC,kBAAO,OAAG;QACX,8BAAC,wBAAa;YACZ,8BAAC,iBAAM,IAAC,OAAO,EAAE,cAAM,OAAA,WAAW,EAAE,EAAb,CAAa,EAAE,KAAK,EAAC,SAAS,aAE5C,CACK,CACT,CACV,CAAA;AACH,CAAC;AAjJD,sCAiJC"}