@jbrowse/plugin-linear-genome-view 1.6.7 → 1.7.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (74) hide show
  1. package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +232 -0
  2. package/dist/BaseLinearDisplay/components/Block.js +86 -0
  3. package/dist/BaseLinearDisplay/components/LinearBlocks.js +110 -0
  4. package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +192 -0
  5. package/dist/BaseLinearDisplay/index.js +41 -0
  6. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +763 -0
  7. package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +24 -0
  8. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +328 -0
  9. package/dist/LinearBareDisplay/configSchema.js +19 -0
  10. package/dist/LinearBareDisplay/index.js +21 -0
  11. package/dist/LinearBareDisplay/index.test.js +33 -0
  12. package/dist/LinearBareDisplay/model.d.ts +7 -7
  13. package/dist/LinearBareDisplay/model.js +44 -0
  14. package/dist/LinearBasicDisplay/components/SetMaxHeight.js +94 -0
  15. package/dist/LinearBasicDisplay/configSchema.js +25 -0
  16. package/dist/LinearBasicDisplay/index.js +23 -0
  17. package/dist/LinearBasicDisplay/model.d.ts +7 -7
  18. package/dist/LinearBasicDisplay/model.js +162 -0
  19. package/dist/LinearGenomeView/components/CenterLine.js +80 -0
  20. package/dist/LinearGenomeView/components/ExportSvgDialog.js +137 -0
  21. package/dist/LinearGenomeView/components/Header.js +144 -0
  22. package/dist/LinearGenomeView/components/HelpDialog.js +48 -0
  23. package/dist/LinearGenomeView/components/ImportForm.js +330 -0
  24. package/dist/LinearGenomeView/components/LinearGenomeView.js +129 -0
  25. package/dist/LinearGenomeView/components/LinearGenomeView.test.js +234 -0
  26. package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +349 -0
  27. package/dist/LinearGenomeView/components/MiniControls.js +83 -0
  28. package/dist/LinearGenomeView/components/OverviewRubberBand.js +310 -0
  29. package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +6 -6
  30. package/dist/LinearGenomeView/components/OverviewScaleBar.js +403 -0
  31. package/dist/LinearGenomeView/components/RefNameAutocomplete.js +331 -0
  32. package/dist/LinearGenomeView/components/RubberBand.js +309 -0
  33. package/dist/LinearGenomeView/components/Ruler.js +101 -0
  34. package/dist/LinearGenomeView/components/ScaleBar.js +184 -0
  35. package/dist/LinearGenomeView/components/ScaleBar.test.js +180 -0
  36. package/dist/LinearGenomeView/components/SearchBox.js +201 -0
  37. package/dist/LinearGenomeView/components/SearchResultsDialog.js +159 -0
  38. package/dist/LinearGenomeView/components/SequenceDialog.js +304 -0
  39. package/dist/LinearGenomeView/components/TrackContainer.js +179 -0
  40. package/dist/LinearGenomeView/components/TrackLabel.js +165 -0
  41. package/dist/LinearGenomeView/components/TracksContainer.js +214 -0
  42. package/dist/LinearGenomeView/components/VerticalGuides.js +116 -0
  43. package/dist/LinearGenomeView/components/ZoomControls.js +92 -0
  44. package/dist/LinearGenomeView/components/util.js +16 -0
  45. package/dist/LinearGenomeView/index.js +1418 -0
  46. package/dist/LinearGenomeView/index.test.js +1170 -0
  47. package/dist/LinearGenomeView/util.js +93 -0
  48. package/dist/LinearGenomeView/util.test.js +78 -0
  49. package/dist/index.d.ts +21 -21
  50. package/dist/index.js +293 -6
  51. package/dist/plugin-linear-genome-view.cjs.development.js +37 -22
  52. package/dist/plugin-linear-genome-view.cjs.development.js.map +1 -1
  53. package/dist/plugin-linear-genome-view.cjs.production.min.js +1 -1
  54. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +1 -1
  55. package/dist/plugin-linear-genome-view.esm.js +37 -22
  56. package/dist/plugin-linear-genome-view.esm.js.map +1 -1
  57. package/package.json +4 -8
  58. package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +9 -12
  59. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +2 -0
  60. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +10 -8
  61. package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +21 -12
  62. package/src/LinearBasicDisplay/model.ts +17 -18
  63. package/src/LinearGenomeView/components/Header.tsx +1 -1
  64. package/src/LinearGenomeView/components/ImportForm.tsx +10 -4
  65. package/src/LinearGenomeView/components/LinearGenomeView.test.js +1 -0
  66. package/src/LinearGenomeView/components/OverviewScaleBar.tsx +2 -2
  67. package/src/LinearGenomeView/components/RubberBand.tsx +14 -24
  68. package/src/LinearGenomeView/components/ScaleBar.test.tsx +1 -0
  69. package/src/LinearGenomeView/components/ScaleBar.tsx +3 -6
  70. package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
  71. package/src/LinearGenomeView/components/TrackContainer.tsx +31 -24
  72. package/src/LinearGenomeView/components/TrackLabel.tsx +1 -1
  73. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +23 -47
  74. package/src/LinearGenomeView/index.tsx +2 -3
@@ -533,12 +533,12 @@ exports[`<LinearGenomeView /> renders one track, one region 1`] = `
533
533
  style="height: 100px;"
534
534
  >
535
535
  <div
536
+ class="makeStyles-renderingComponentContainer"
536
537
  style="transform: scaleX(1);"
537
538
  >
538
539
  <div
539
540
  class="makeStyles-display"
540
541
  data-testid="display-testConfig-LinearBareDisplay"
541
- role="presentation"
542
542
  >
543
543
  <div
544
544
  class="makeStyles-linearBlocks"
@@ -1423,12 +1423,12 @@ exports[`<LinearGenomeView /> renders two tracks, two regions 1`] = `
1423
1423
  style="height: 100px;"
1424
1424
  >
1425
1425
  <div
1426
+ class="makeStyles-renderingComponentContainer"
1426
1427
  style="transform: scaleX(1);"
1427
1428
  >
1428
1429
  <div
1429
1430
  class="makeStyles-display"
1430
1431
  data-testid="display-testConfig-LinearBareDisplay"
1431
- role="presentation"
1432
1432
  >
1433
1433
  <div
1434
1434
  class="makeStyles-linearBlocks"
@@ -1443,17 +1443,11 @@ exports[`<LinearGenomeView /> renders two tracks, two regions 1`] = `
1443
1443
  class="makeStyles-contentBlock"
1444
1444
  style="width: 100px;"
1445
1445
  >
1446
- <div
1447
- style="position: relative;"
1448
- >
1449
- <svg
1450
- class="SvgFeatureRendering"
1451
- data-testid="svgfeatures"
1452
- height="100"
1453
- style="display: block;"
1454
- width="100"
1455
- />
1456
- </div>
1446
+ <svg
1447
+ data-testid="svgfeatures"
1448
+ height="100"
1449
+ width="100"
1450
+ />
1457
1451
  </div>
1458
1452
  <div
1459
1453
  class="makeStyles-interRegionPaddingBlock"
@@ -1463,17 +1457,11 @@ exports[`<LinearGenomeView /> renders two tracks, two regions 1`] = `
1463
1457
  class="makeStyles-contentBlock"
1464
1458
  style="width: 1000px;"
1465
1459
  >
1466
- <div
1467
- style="position: relative;"
1468
- >
1469
- <svg
1470
- class="SvgFeatureRendering"
1471
- data-testid="svgfeatures"
1472
- height="100"
1473
- style="display: block;"
1474
- width="1000"
1475
- />
1476
- </div>
1460
+ <svg
1461
+ data-testid="svgfeatures"
1462
+ height="100"
1463
+ width="1000"
1464
+ />
1477
1465
  </div>
1478
1466
  <div
1479
1467
  class="makeStyles-boundaryPaddingBlock"
@@ -1578,12 +1566,12 @@ exports[`<LinearGenomeView /> renders two tracks, two regions 1`] = `
1578
1566
  style="height: 100px;"
1579
1567
  >
1580
1568
  <div
1569
+ class="makeStyles-renderingComponentContainer"
1581
1570
  style="transform: scaleX(1);"
1582
1571
  >
1583
1572
  <div
1584
1573
  class="makeStyles-display"
1585
1574
  data-testid="display-testConfig2-LinearBareDisplay"
1586
- role="presentation"
1587
1575
  >
1588
1576
  <div
1589
1577
  class="makeStyles-linearBlocks"
@@ -1598,17 +1586,11 @@ exports[`<LinearGenomeView /> renders two tracks, two regions 1`] = `
1598
1586
  class="makeStyles-contentBlock"
1599
1587
  style="width: 100px;"
1600
1588
  >
1601
- <div
1602
- style="position: relative;"
1603
- >
1604
- <svg
1605
- class="SvgFeatureRendering"
1606
- data-testid="svgfeatures"
1607
- height="100"
1608
- style="display: block;"
1609
- width="100"
1610
- />
1611
- </div>
1589
+ <svg
1590
+ data-testid="svgfeatures"
1591
+ height="100"
1592
+ width="100"
1593
+ />
1612
1594
  </div>
1613
1595
  <div
1614
1596
  class="makeStyles-interRegionPaddingBlock"
@@ -1618,17 +1600,11 @@ exports[`<LinearGenomeView /> renders two tracks, two regions 1`] = `
1618
1600
  class="makeStyles-contentBlock"
1619
1601
  style="width: 1000px;"
1620
1602
  >
1621
- <div
1622
- style="position: relative;"
1623
- >
1624
- <svg
1625
- class="SvgFeatureRendering"
1626
- data-testid="svgfeatures"
1627
- height="100"
1628
- style="display: block;"
1629
- width="1000"
1630
- />
1631
- </div>
1603
+ <svg
1604
+ data-testid="svgfeatures"
1605
+ height="100"
1606
+ width="1000"
1607
+ />
1632
1608
  </div>
1633
1609
  <div
1634
1610
  class="makeStyles-boundaryPaddingBlock"
@@ -2,7 +2,7 @@ import { getConf, AnyConfigurationModel } from '@jbrowse/core/configuration'
2
2
  import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes/models'
3
3
  import { Region } from '@jbrowse/core/util/types'
4
4
  import { ElementId, Region as MUIRegion } from '@jbrowse/core/util/types/mst'
5
- import { MenuItem } from '@jbrowse/core/ui'
5
+ import { MenuItem, ReturnToImportFormDialog } from '@jbrowse/core/ui'
6
6
  import {
7
7
  assembleLocString,
8
8
  clamp,
@@ -52,7 +52,6 @@ import { renderToSvg } from './components/LinearGenomeViewSvg'
52
52
  import RefNameAutocomplete from './components/RefNameAutocomplete'
53
53
  import SearchBox from './components/SearchBox'
54
54
  import ExportSvgDlg from './components/ExportSvgDialog'
55
- import { ReturnToImportFormDialog } from '@jbrowse/core/ui'
56
55
 
57
56
  export interface BpOffset {
58
57
  refName?: string
@@ -100,8 +99,8 @@ export const HEADER_OVERVIEW_HEIGHT = 20
100
99
  export const SCALE_BAR_HEIGHT = 17
101
100
  export const RESIZE_HANDLE_HEIGHT = 3
102
101
  export const INTER_REGION_PADDING_WIDTH = 2
103
- export const WIDGET_HEIGHT = 32
104
102
  export const SPACING = 7
103
+ export const WIDGET_HEIGHT = 32
105
104
 
106
105
  function localStorageGetItem(item: string) {
107
106
  return typeof localStorage !== 'undefined'