@jbrowse/plugin-linear-genome-view 1.6.7 → 1.7.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/BaseLinearDisplay/components/BaseLinearDisplay.js +232 -0
- package/dist/BaseLinearDisplay/components/Block.js +86 -0
- package/dist/BaseLinearDisplay/components/LinearBlocks.js +110 -0
- package/dist/BaseLinearDisplay/components/ServerSideRenderedBlockContent.js +192 -0
- package/dist/BaseLinearDisplay/index.js +41 -0
- package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.js +763 -0
- package/dist/BaseLinearDisplay/models/baseLinearDisplayConfigSchema.js +24 -0
- package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.js +328 -0
- package/dist/LinearBareDisplay/configSchema.js +19 -0
- package/dist/LinearBareDisplay/index.js +21 -0
- package/dist/LinearBareDisplay/index.test.js +33 -0
- package/dist/LinearBareDisplay/model.d.ts +7 -7
- package/dist/LinearBareDisplay/model.js +44 -0
- package/dist/LinearBasicDisplay/components/SetMaxHeight.js +94 -0
- package/dist/LinearBasicDisplay/configSchema.js +25 -0
- package/dist/LinearBasicDisplay/index.js +23 -0
- package/dist/LinearBasicDisplay/model.d.ts +7 -7
- package/dist/LinearBasicDisplay/model.js +162 -0
- package/dist/LinearGenomeView/components/CenterLine.js +80 -0
- package/dist/LinearGenomeView/components/ExportSvgDialog.js +137 -0
- package/dist/LinearGenomeView/components/Header.js +144 -0
- package/dist/LinearGenomeView/components/HelpDialog.js +48 -0
- package/dist/LinearGenomeView/components/ImportForm.js +330 -0
- package/dist/LinearGenomeView/components/LinearGenomeView.js +129 -0
- package/dist/LinearGenomeView/components/LinearGenomeView.test.js +234 -0
- package/dist/LinearGenomeView/components/LinearGenomeViewSvg.js +349 -0
- package/dist/LinearGenomeView/components/MiniControls.js +83 -0
- package/dist/LinearGenomeView/components/OverviewRubberBand.js +310 -0
- package/dist/LinearGenomeView/components/OverviewScaleBar.d.ts +6 -6
- package/dist/LinearGenomeView/components/OverviewScaleBar.js +403 -0
- package/dist/LinearGenomeView/components/RefNameAutocomplete.js +331 -0
- package/dist/LinearGenomeView/components/RubberBand.js +309 -0
- package/dist/LinearGenomeView/components/Ruler.js +101 -0
- package/dist/LinearGenomeView/components/ScaleBar.js +184 -0
- package/dist/LinearGenomeView/components/ScaleBar.test.js +180 -0
- package/dist/LinearGenomeView/components/SearchBox.js +201 -0
- package/dist/LinearGenomeView/components/SearchResultsDialog.js +159 -0
- package/dist/LinearGenomeView/components/SequenceDialog.js +304 -0
- package/dist/LinearGenomeView/components/TrackContainer.js +179 -0
- package/dist/LinearGenomeView/components/TrackLabel.js +165 -0
- package/dist/LinearGenomeView/components/TracksContainer.js +214 -0
- package/dist/LinearGenomeView/components/VerticalGuides.js +116 -0
- package/dist/LinearGenomeView/components/ZoomControls.js +92 -0
- package/dist/LinearGenomeView/components/util.js +16 -0
- package/dist/LinearGenomeView/index.js +1418 -0
- package/dist/LinearGenomeView/index.test.js +1170 -0
- package/dist/LinearGenomeView/util.js +93 -0
- package/dist/LinearGenomeView/util.test.js +78 -0
- package/dist/index.d.ts +21 -21
- package/dist/index.js +293 -6
- package/dist/plugin-linear-genome-view.cjs.development.js +37 -22
- package/dist/plugin-linear-genome-view.cjs.development.js.map +1 -1
- package/dist/plugin-linear-genome-view.cjs.production.min.js +1 -1
- package/dist/plugin-linear-genome-view.cjs.production.min.js.map +1 -1
- package/dist/plugin-linear-genome-view.esm.js +37 -22
- package/dist/plugin-linear-genome-view.esm.js.map +1 -1
- package/package.json +4 -8
- package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +9 -12
- package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +2 -0
- package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +10 -8
- package/src/LinearBasicDisplay/components/SetMaxHeight.tsx +21 -12
- package/src/LinearBasicDisplay/model.ts +17 -18
- package/src/LinearGenomeView/components/Header.tsx +1 -1
- package/src/LinearGenomeView/components/ImportForm.tsx +10 -4
- package/src/LinearGenomeView/components/LinearGenomeView.test.js +1 -0
- package/src/LinearGenomeView/components/OverviewScaleBar.tsx +2 -2
- package/src/LinearGenomeView/components/RubberBand.tsx +14 -24
- package/src/LinearGenomeView/components/ScaleBar.test.tsx +1 -0
- package/src/LinearGenomeView/components/ScaleBar.tsx +3 -6
- package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
- package/src/LinearGenomeView/components/TrackContainer.tsx +31 -24
- package/src/LinearGenomeView/components/TrackLabel.tsx +1 -1
- package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +23 -47
- package/src/LinearGenomeView/index.tsx +2 -3
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exports["default"] = exports.Tooltip = void 0;
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var _LinearBlocks = _interopRequireDefault(require("./LinearBlocks"));
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function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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function _objectSpread(target) { for (var i = 1; i < arguments.length; i++) { var source = null != arguments[i] ? arguments[i] : {}; i % 2 ? ownKeys(Object(source), !0).forEach(function (key) { (0, _defineProperty2["default"])(target, key, source[key]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(target, Object.getOwnPropertyDescriptors(source)) : ownKeys(Object(source)).forEach(function (key) { Object.defineProperty(target, key, Object.getOwnPropertyDescriptor(source, key)); }); } return target; }
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var useStyles = (0, _core.makeStyles)(function (theme) {
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// https://github.com/mui-org/material-ui/blob/master/packages/material-ui/src/Tooltip/Tooltip.js
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tooltip: {
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pointerEvents: 'none',
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backgroundColor: (0, _core.alpha)(theme.palette.grey[700], 0.9),
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var TooltipContents = /*#__PURE__*/_react["default"].forwardRef(function (_ref, ref) {
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var Tooltip = (0, _mobxReact.observer)(function (_ref2) {
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var _useState = (0, _react.useState)(0),
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_useState2 = (0, _slicedToArray2["default"])(_useState, 2),
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setWidth = _useState2[1];
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var _useState3 = (0, _react.useState)(null),
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_useState4 = (0, _slicedToArray2["default"])(_useState3, 2),
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popperElt = _useState4[0],
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setPopperElt = _useState4[1]; // must be memoized a la https://github.com/popperjs/react-popper/issues/391
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var virtElement = (0, _react.useMemo)(function () {
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getBoundingClientRect: function getBoundingClientRect() {
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var x = clientMouseCoord[0] + width / 2 + 20;
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toJSON: function toJSON() {}
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var _usePopper = (0, _reactPopper.usePopper)(virtElement, popperElt),
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attributes = _usePopper.attributes;
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var contents = featureUnderMouse ? (0, _configuration.getConf)(model, 'mouseover', {
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feature: featureUnderMouse
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return featureUnderMouse && contents ? /*#__PURE__*/_react["default"].createElement(_core.Portal, null, /*#__PURE__*/_react["default"].createElement("div", (0, _extends2["default"])({
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ref: setPopperElt,
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className: classes.tooltip // zIndex needed to go over widget drawer
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,
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style: _objectSpread(_objectSpread({}, styles.popper), {}, {
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zIndex: 100000
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})
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}, attributes.popper), /*#__PURE__*/_react["default"].createElement(TooltipContents, {
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ref: function ref(elt) {
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return setWidth((elt === null || elt === void 0 ? void 0 : elt.getBoundingClientRect().width) || 0);
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message: contents
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exports.Tooltip = Tooltip;
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var BaseLinearDisplay = (0, _mobxReact.observer)(function (props) {
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var classes = useStyles();
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var theme = (0, _core.useTheme)();
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var ref = (0, _react.useRef)(null);
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var _useState5 = (0, _react.useState)(),
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_useState6 = (0, _slicedToArray2["default"])(_useState5, 2),
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clientRect = _useState6[0],
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setClientRect = _useState6[1];
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var _useState7 = (0, _react.useState)([0, 0]),
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_useState8 = (0, _slicedToArray2["default"])(_useState7, 2),
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offsetMouseCoord = _useState8[0],
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setOffsetMouseCoord = _useState8[1];
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var _useState9 = (0, _react.useState)([0, 0]),
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_useState10 = (0, _slicedToArray2["default"])(_useState9, 2),
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clientMouseCoord = _useState10[0],
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setClientMouseCoord = _useState10[1];
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var _useState11 = (0, _react.useState)(),
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_useState12 = (0, _slicedToArray2["default"])(_useState11, 2),
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contextCoord = _useState12[0],
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setContextCoord = _useState12[1];
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var model = props.model,
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children = props.children;
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var TooltipComponent = model.TooltipComponent,
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DisplayMessageComponent = model.DisplayMessageComponent,
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contextMenuItems = model.contextMenuItems,
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height = model.height,
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setContextMenuFeature = model.setContextMenuFeature;
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return /*#__PURE__*/_react["default"].createElement("div", {
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ref: ref,
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"data-testid": "display-".concat((0, _configuration.getConf)(model, 'displayId')),
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className: classes.display,
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onContextMenu: function onContextMenu(event) {
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setContextCoord(undefined);
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} else if (ref.current) {
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setContextCoord([event.clientX, event.clientY]);
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}
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},
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onMouseMove: function onMouseMove(event) {
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return;
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}
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var rect = ref.current.getBoundingClientRect();
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var left = rect.left,
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top = rect.top;
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setOffsetMouseCoord([event.clientX - left, event.clientY - top]);
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setClientMouseCoord([event.clientX, event.clientY]);
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setClientRect(rect);
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}
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}, DisplayMessageComponent ? /*#__PURE__*/_react["default"].createElement(DisplayMessageComponent, {
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model: model
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}) : /*#__PURE__*/_react["default"].createElement(_LinearBlocks["default"], props), children, /*#__PURE__*/_react["default"].createElement(TooltipComponent, {
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model: model,
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height: height,
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offsetMouseCoord: offsetMouseCoord,
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clientMouseCoord: clientMouseCoord,
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clientRect: clientRect,
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mouseCoord: offsetMouseCoord
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}), /*#__PURE__*/_react["default"].createElement(_ui.Menu, {
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open: Boolean(contextCoord) && Boolean(contextMenuItems().length),
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onMenuItemClick: function onMenuItemClick(_, callback) {
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callback();
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setContextCoord(undefined);
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},
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onClose: function onClose() {
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setContextCoord(undefined);
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setContextMenuFeature(undefined);
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},
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TransitionProps: {
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onExit: function onExit() {
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setContextCoord(undefined);
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setContextMenuFeature(undefined);
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}
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},
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anchorReference: "anchorPosition",
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anchorPosition: contextCoord ? {
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top: contextCoord[1],
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left: contextCoord[0]
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} : undefined,
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style: {
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zIndex: theme.zIndex.tooltip
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},
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menuItems: contextMenuItems(),
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"data-testid": "base_linear_display_context_menu"
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}));
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});
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
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loading: {
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paddingLeft: '0.6em',
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backgroundColor: theme.palette.action.disabledBackground,
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},
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blockMessage: {
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width: '100%',
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background: theme.palette.action.disabledBackground,
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blockError: {
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padding: theme.spacing(2),
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width: '100%',
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whiteSpace: 'normal',
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overflowY: 'auto'
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},
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blockReactNodeMessage: {
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},
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dots: {
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'&::after': {
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display: 'inline-block',
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animation: '$ellipsis 1.5s infinite',
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content: '"."',
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'@keyframes ellipsis': {
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'0%': {
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content: '"."'
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content: '"..."'
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};
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});
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function Repeater(_ref) {
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|
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} // eslint-disable-next-line @typescript-eslint/no-explicit-any
|
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(0, _react.useEffect)(function () {
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}, 300);
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var blockStatus = model.status;
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var status = displayStatus || blockStatus;
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return /*#__PURE__*/_react["default"].createElement(_react["default"].Fragment, null, shown ? /*#__PURE__*/_react["default"].createElement("div", {
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function BlockMessage(_ref3) {
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className: classes.blockReactNodeMessage
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className: classes.blockMessage
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startIcon: /*#__PURE__*/_react["default"].createElement(_Refresh["default"], null)
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}, "".concat(error)));
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}
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var ServerSideRenderedBlockContent = (0, _mobxReact.observer)(function (_ref5) {
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});
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var _default = ServerSideRenderedBlockContent;
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exports["default"] = _default;
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@@ -0,0 +1,41 @@
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"use strict";
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var _typeof = require("@babel/runtime/helpers/typeof");
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Object.defineProperty(exports, "__esModule", {
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value: true
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});
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Object.defineProperty(exports, "BaseLinearDisplay", {
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enumerable: true,
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|
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|
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get: function get() {
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|
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return _BaseLinearDisplayModel.BaseLinearDisplay;
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}
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});
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Object.defineProperty(exports, "BaseLinearDisplayComponent", {
|
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|
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enumerable: true,
|
|
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|
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get: function get() {
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return _BaseLinearDisplay["default"];
|
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}
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});
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Object.defineProperty(exports, "Tooltip", {
|
|
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|
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enumerable: true,
|
|
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|
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get: function get() {
|
|
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|
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return _BaseLinearDisplay.Tooltip;
|
|
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|
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}
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|
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});
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|
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Object.defineProperty(exports, "baseLinearDisplayConfigSchema", {
|
|
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|
+
enumerable: true,
|
|
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|
+
get: function get() {
|
|
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|
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return _baseLinearDisplayConfigSchema.baseLinearDisplayConfigSchema;
|
|
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|
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}
|
|
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|
+
});
|
|
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|
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|
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|
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var _baseLinearDisplayConfigSchema = require("./models/baseLinearDisplayConfigSchema");
|
|
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|
+
|
|
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|
+
var _BaseLinearDisplayModel = require("./models/BaseLinearDisplayModel");
|
|
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|
+
|
|
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|
+
var _BaseLinearDisplay = _interopRequireWildcard(require("./components/BaseLinearDisplay"));
|
|
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|
+
|
|
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|
+
function _getRequireWildcardCache(nodeInterop) { if (typeof WeakMap !== "function") return null; var cacheBabelInterop = new WeakMap(); var cacheNodeInterop = new WeakMap(); return (_getRequireWildcardCache = function _getRequireWildcardCache(nodeInterop) { return nodeInterop ? cacheNodeInterop : cacheBabelInterop; })(nodeInterop); }
|
|
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|
+
|
|
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|
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function _interopRequireWildcard(obj, nodeInterop) { if (!nodeInterop && obj && obj.__esModule) { return obj; } if (obj === null || _typeof(obj) !== "object" && typeof obj !== "function") { return { "default": obj }; } var cache = _getRequireWildcardCache(nodeInterop); if (cache && cache.has(obj)) { return cache.get(obj); } var newObj = {}; var hasPropertyDescriptor = Object.defineProperty && Object.getOwnPropertyDescriptor; for (var key in obj) { if (key !== "default" && Object.prototype.hasOwnProperty.call(obj, key)) { var desc = hasPropertyDescriptor ? Object.getOwnPropertyDescriptor(obj, key) : null; if (desc && (desc.get || desc.set)) { Object.defineProperty(newObj, key, desc); } else { newObj[key] = obj[key]; } } } newObj["default"] = obj; if (cache) { cache.set(obj, newObj); } return newObj; }
|