@jbrowse/plugin-linear-genome-view 1.6.1 → 1.6.5

package/dist/BaseLinearDisplay/components/LinearBlocks.d.ts

@@ -7,11 +7,6 @@ declare const RenderedBlocks: ({ model }: {
 declare function LinearBlocks({ model }: {
     model: BaseLinearDisplayModel;
 }): JSX.Element;
-declare namespace LinearBlocks {
-    var propTypes: {
-        model: import("prop-types").Validator<any>;
-    };
-}
 export { RenderedBlocks, useStyles };
 declare const _default: typeof LinearBlocks;
 export default _default;

package/dist/LinearGenomeView/components/ScaleBar.d.ts

@@ -171,6 +171,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         readonly cytobandOffset: number;
     } & {
         menuItems(): import("@jbrowse/core/ui").MenuItem[];
+    } & {
         readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly roundedDynamicBlocks: {
@@ -367,6 +368,7 @@ declare const _default: React.ForwardRefExoticComponent<{
         readonly cytobandOffset: number;
     } & {
         menuItems(): import("@jbrowse/core/ui").MenuItem[];
+    } & {
         readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly roundedDynamicBlocks: {

package/dist/LinearGenomeView/index.d.ts

@@ -259,6 +259,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
     readonly cytobandOffset: number;
 } & {
     menuItems(): MenuItem[];
+} & {
     readonly staticBlocks: BlockSet;
     readonly dynamicBlocks: BlockSet;
     readonly roundedDynamicBlocks: {

package/dist/plugin-linear-genome-view.cjs.development.js

@@ -1313,8 +1313,7 @@ var RenderedBlocks = /*#__PURE__*/mobxReact.observer(function (_ref) {
 function LinearBlocks(_ref2) {
   var model = _ref2.model;
   var classes = useStyles$1();
-  var blockDefinitions = model.blockDefinitions; // eslint-disable-next-line @typescript-eslint/no-explicit-any
-
+  var blockDefinitions = model.blockDefinitions;
   var viewModel = util.getContainingView(model);
   return /*#__PURE__*/React__default.createElement("div", {
     "data-testid": "Blockset",
@@ -1326,10 +1325,6 @@ function LinearBlocks(_ref2) {
     model: model
   }));
 }
-
-LinearBlocks.propTypes = {
-  model: mobxReact.PropTypes.observableObject.isRequired
-};
 var LinearBlocks$1 = /*#__PURE__*/mobxReact.observer(LinearBlocks);
 
 function round(value) {
@@ -2332,9 +2327,10 @@ var BaseLinearDisplay$1 = /*#__PURE__*/mobxStateTree.types.compose('BaseLinearDi
               case 0:
                 self.setError();
                 aborter = new AbortController();
-                view = util.getContainingView(self);
+                view = util.getContainingView(self); // extra check for contentBlocks.length
+                // https://github.com/GMOD/jbrowse-components/issues/2694
 
-                if (view.initialized) {
+                if (!(!view.initialized || !view.staticBlocks.contentBlocks.length)) {
                   _context.next = 5;
                   break;
                 }
@@ -2385,7 +2381,7 @@ var BaseLinearDisplay$1 = /*#__PURE__*/mobxStateTree.types.compose('BaseLinearDi
     afterAttach: function afterAttach() {
       // this autorun performs stats estimation
       //
-      // the chain of events calls estimateRegionStats against the data
+      // the chain of events calls estimateRegionsStats against the data
       // adapter which by default uses featureDensity, but can also respond
       // with a byte size estimate and fetch size limit (data adapter can
       // define what is too much data)
@@ -4682,7 +4678,9 @@ var TrackLabel = /*#__PURE__*/React__default.forwardRef(function (props, ref) {
     handleClose();
   }
 
-  var items = track.trackMenuItems();
+  var items = [].concat(_toConsumableArray((_session$getTrackActi = session.getTrackActionMenuItems) === null || _session$getTrackActi === void 0 ? void 0 : _session$getTrackActi.call(session, trackConf)), _toConsumableArray(track.trackMenuItems())).sort(function (a, b) {
+    return (b.priority || 0) - (a.priority || 0);
+  });
   return /*#__PURE__*/React__default.createElement(React__default.Fragment, null, /*#__PURE__*/React__default.createElement(core.Paper, {
     ref: ref,
     className: clsx(className, classes.root)
@@ -4718,9 +4716,7 @@ var TrackLabel = /*#__PURE__*/React__default.forwardRef(function (props, ref) {
     onMenuItemClick: handleMenuItemClick,
     open: Boolean(anchorEl),
     onClose: handleClose,
-    menuItems: [].concat(_toConsumableArray((_session$getTrackActi = session.getTrackActionMenuItems) === null || _session$getTrackActi === void 0 ? void 0 : _session$getTrackActi.call(session, trackConf)), _toConsumableArray(items)).sort(function (a, b) {
-      return (b.priority || 0) - (a.priority || 0);
-    })
+    menuItems: items
   }));
 });
 var TrackLabel$1 = /*#__PURE__*/mobxReact.observer(TrackLabel);
@@ -6466,6 +6462,11 @@ var RESIZE_HANDLE_HEIGHT = 3;
 var INTER_REGION_PADDING_WIDTH = 2;
 var WIDGET_HEIGHT = 32;
 var SPACING = 7;
+
+function localStorageGetItem(item) {
+  return typeof localStorage !== 'undefined' ? localStorage.getItem(item) : undefined;
+}
+
 function stateModelFactory$1(pluginManager) {
   return mobxStateTree.types.compose(models.BaseViewModel, mobxStateTree.types.model('LinearGenomeView', {
     id: mst.ElementId,
@@ -6480,15 +6481,15 @@ function stateModelFactory$1(pluginManager) {
     hideHeaderOverview: false,
     trackSelectorType: mobxStateTree.types.optional(mobxStateTree.types.enumeration(['hierarchical']), 'hierarchical'),
     trackLabels: mobxStateTree.types.optional(mobxStateTree.types.string, function () {
-      return localStorage.getItem('lgv-trackLabels') || 'overlapping';
+      return localStorageGetItem('lgv-trackLabels') || 'overlapping';
     }),
     showCenterLine: mobxStateTree.types.optional(mobxStateTree.types["boolean"], function () {
-      var setting = localStorage.getItem('lgv-showCenterLine');
-      return setting !== undefined ? !!setting : false;
+      var setting = localStorageGetItem('lgv-showCenterLine');
+      return setting !== undefined && setting !== null ? !!+setting : false;
     }),
     showCytobandsSetting: mobxStateTree.types.optional(mobxStateTree.types["boolean"], function () {
-      var setting = localStorage.getItem('lgv-showCytobands');
-      return setting !== undefined ? !!setting : true;
+      var setting = localStorageGetItem('lgv-showCytobands');
+      return setting !== undefined && setting !== null ? !!+setting : true;
     })
   }))["volatile"](function () {
     return {
@@ -7537,8 +7538,6 @@ function stateModelFactory$1(pluginManager) {
 
     };
   }).views(function (self) {
-    var currentlyCalculatedStaticBlocks;
-    var stringifiedCurrentlyCalculatedStaticBlocks = '';
     return {
       menuItems: function menuItems() {
         var canShowCytobands = self.canShowCytobands,
@@ -7661,8 +7660,12 @@ function stateModelFactory$1(pluginManager) {
         }
 
         return menuItems;
-      },
-
+      }
+    };
+  }).views(function (self) {
+    var currentlyCalculatedStaticBlocks;
+    var stringifiedCurrentlyCalculatedStaticBlocks = '';
+    return {
       get staticBlocks() {
         var ret = calculateStaticBlocks(self);
         var sret = JSON.stringify(ret);