@jbrowse/plugin-linear-genome-view 1.4.4 → 1.5.0

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Files changed (30) hide show
  1. package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts +16 -9
  2. package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts +2 -2
  3. package/dist/LinearBareDisplay/model.d.ts +8 -8
  4. package/dist/LinearBasicDisplay/model.d.ts +11 -8
  5. package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts +0 -10
  6. package/dist/LinearGenomeView/components/ScaleBar.d.ts +22 -2
  7. package/dist/LinearGenomeView/components/util.d.ts +2 -0
  8. package/dist/LinearGenomeView/index.d.ts +13 -2
  9. package/dist/index.d.ts +26 -26
  10. package/dist/plugin-linear-genome-view.cjs.development.js +272 -268
  11. package/dist/plugin-linear-genome-view.cjs.development.js.map +1 -1
  12. package/dist/plugin-linear-genome-view.cjs.production.min.js +1 -1
  13. package/dist/plugin-linear-genome-view.cjs.production.min.js.map +1 -1
  14. package/dist/plugin-linear-genome-view.esm.js +272 -269
  15. package/dist/plugin-linear-genome-view.esm.js.map +1 -1
  16. package/package.json +2 -2
  17. package/src/BaseLinearDisplay/components/BaseLinearDisplay.tsx +3 -0
  18. package/src/BaseLinearDisplay/models/BaseLinearDisplayModel.tsx +3 -7
  19. package/src/BaseLinearDisplay/models/serverSideRenderedBlock.ts +15 -13
  20. package/src/LinearBasicDisplay/model.ts +25 -3
  21. package/src/LinearGenomeView/components/ExportSvgDialog.tsx +6 -6
  22. package/src/LinearGenomeView/components/Header.tsx +40 -74
  23. package/src/LinearGenomeView/components/ImportForm.tsx +124 -134
  24. package/src/LinearGenomeView/components/LinearGenomeView.test.js +6 -6
  25. package/src/LinearGenomeView/components/RefNameAutocomplete.tsx +20 -25
  26. package/src/LinearGenomeView/components/SequenceDialog.tsx +1 -1
  27. package/src/LinearGenomeView/components/__snapshots__/LinearGenomeView.test.js.snap +0 -176
  28. package/src/LinearGenomeView/components/util.ts +8 -0
  29. package/src/LinearGenomeView/index.tsx +14 -13
  30. package/src/index.ts +3 -1
package/dist/BaseLinearDisplay/models/BaseLinearDisplayModel.d.ts CHANGED
@@ -42,7 +42,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  features: Map<string, Feature> | undefined;
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  layout: any;
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  status: string;
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- error: Error | undefined;
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+ error: unknown;
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
@@ -53,23 +53,30 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  doReload(): void;
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  afterAttach(): void;
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  setStatus(message: string): void;
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- setLoading(abortController: AbortController): void;
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+ setLoading(abortController: AbortController): void; /**
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+ * returns a string feature ID if the globally-selected object
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+ * is probably a feature
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+ */
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  setMessage(messageText: string): void;
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  setRendered(props: {
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  reactElement: React.ReactElement<any, string | ((props: any) => React.ReactElement<any, any> | null) | (new (props: any) => React.Component<any, any, any>)>;
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  features: Map<string, Feature>;
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  layout: any;
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+ /**
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+ * a CompositeMap of `featureId -> feature obj` that
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+ * just looks in all the block data for that feature
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+ */
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  maxHeightReached: boolean;
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  renderProps: any;
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  } | undefined): void;
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- setError(error: Error): void;
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+ setError(error: unknown): void;
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  reload(): void;
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  beforeDestroy(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & {
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  readonly RenderingComponent: React.FC<{
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  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -78,14 +85,14 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }> & {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  onHorizontalScroll?: Function | undefined;
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  blockState?: Record<string, any> | undefined;
@@ -97,14 +104,14 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }> & {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  }> | null;
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  readonly adapterConfig: any;
@@ -116,7 +123,7 @@ export declare const BaseLinearDisplay: import("mobx-state-tree").IModelType<{
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  readonly viewMenuActions: MenuItem[];
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  regionCannotBeRendered(): undefined;
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  } & {
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- setError(error?: Error | undefined): void;
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+ setError(error?: unknown): void;
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  setRpcDriverName(rpcDriverName: string): void;
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  reload(): void;
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  } & {
package/dist/BaseLinearDisplay/models/serverSideRenderedBlock.d.ts CHANGED
@@ -24,7 +24,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
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  features: Map<string, Feature> | undefined;
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  layout: any;
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  status: string;
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- error: Error | undefined;
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+ error: unknown;
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
@@ -44,7 +44,7 @@ declare const blockState: import("mobx-state-tree").IModelType<{
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  maxHeightReached: boolean;
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  renderProps: any;
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  } | undefined): void;
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- setError(error: Error): void;
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+ setError(error: Error | unknown): void;
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  reload(): void;
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  beforeDestroy(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
package/dist/LinearBareDisplay/model.d.ts CHANGED
@@ -28,7 +28,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
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  layout: any;
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  status: string;
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- error: Error | undefined;
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+ error: unknown;
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
@@ -48,7 +48,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  maxHeightReached: boolean;
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  renderProps: any;
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  } | undefined): void;
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- setError(error: Error): void;
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+ setError(error: unknown): void;
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  reload(): void;
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  beforeDestroy(): void;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -58,7 +58,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & {
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  readonly RenderingComponent: import("react").FC<{
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  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -67,14 +67,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }> & {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  onHorizontalScroll?: Function | undefined;
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  blockState?: Record<string, any> | undefined;
@@ -86,14 +86,14 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }> & {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
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  }> | null;
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  readonly adapterConfig: any;
@@ -105,7 +105,7 @@ export declare function stateModelFactory(configSchema: AnyConfigurationSchemaTy
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  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
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  regionCannotBeRendered(): undefined;
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  } & {
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- setError(error?: Error | undefined): void;
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+ setError(error?: unknown): void;
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  setRpcDriverName(rpcDriverName: string): void;
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  reload(): void;
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  } & {
package/dist/LinearBasicDisplay/model.d.ts CHANGED
@@ -30,7 +30,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
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  layout: any;
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  status: string;
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- error: Error | undefined;
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+ error: unknown;
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  message: string | undefined;
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  maxHeightReached: boolean;
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  ReactComponent: ({ model, }: {
@@ -50,7 +50,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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  maxHeightReached: boolean;
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  renderProps: any;
52
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  } | undefined): void;
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- setError(error: Error): void;
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+ setError(error: unknown): void;
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  reload(): void;
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  beforeDestroy(): void;
56
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
@@ -58,12 +58,13 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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  } & {
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  type: import("mobx-state-tree").ISimpleType<"LinearBasicDisplay">;
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  trackShowLabels: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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+ trackShowDescriptions: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
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  trackDisplayMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  trackMaxHeight: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
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  configuration: import("mobx-state-tree").ITypeUnion<any, any, any>;
64
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
67
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  } & {
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  readonly RenderingComponent: import("react").FC<{
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  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -72,14 +73,14 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
73
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  }> & {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
78
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  type: import("mobx-state-tree").ISimpleType<string>;
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
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  }, {
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
83
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
84
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  onHorizontalScroll?: Function | undefined;
85
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  blockState?: Record<string, any> | undefined;
@@ -91,14 +92,14 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
91
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
92
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  }> & {
93
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  rendererTypeName: string;
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- error: Error | undefined;
95
+ error: unknown;
95
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  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
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  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
97
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  type: import("mobx-state-tree").ISimpleType<string>;
98
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  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
99
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  }, {
100
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  rendererTypeName: string;
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- error: Error | undefined;
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+ error: unknown;
102
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  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
103
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  }> | null;
104
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  readonly adapterConfig: any;
@@ -110,7 +111,7 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
110
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  readonly viewMenuActions: MenuItem[];
111
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  regionCannotBeRendered(): undefined;
112
113
  } & {
113
- setError(error?: Error | undefined): void;
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+ setError(error?: unknown): void;
114
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  setRpcDriverName(rpcDriverName: string): void;
115
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  reload(): void;
116
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  } & {
@@ -164,11 +165,13 @@ declare const stateModelFactory: (configSchema: AnyConfigurationSchemaType) => i
164
165
  } & {
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  readonly rendererTypeName: any;
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  readonly showLabels: any;
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+ readonly showDescriptions: any;
167
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  readonly maxHeight: any;
168
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  readonly displayMode: any;
169
171
  readonly rendererConfig: any;
170
172
  } & {
171
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  toggleShowLabels(): void;
174
+ toggleShowDescriptions(): void;
172
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  setDisplayMode(val: string): void;
173
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  setMaxHeight(val: number): void;
174
177
  } & {
package/dist/LinearGenomeView/components/RefNameAutocomplete.d.ts CHANGED
@@ -1,17 +1,7 @@
1
- /**
2
- * Based on:
3
- * https://material-ui.com/components/autocomplete/#Virtualize.tsx
4
- * Asynchronous Requests for autocomplete:
5
- * https://material-ui.com/components/autocomplete/
6
- */
7
1
  import React from 'react';
8
2
  import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
9
3
  import { TextFieldProps as TFP } from '@material-ui/core';
10
4
  import { LinearGenomeViewModel } from '..';
11
- /**
12
- * Option interface used to format results to display in dropdown
13
- * of the materila ui interface
14
- */
15
5
  export interface Option {
16
6
  group?: string;
17
7
  result: BaseResult;
package/dist/LinearGenomeView/components/ScaleBar.d.ts CHANGED
@@ -131,7 +131,7 @@ declare const _default: React.ForwardRefExoticComponent<{
131
131
  setTrackLabels(setting: "overlapping" | "hidden" | "offset"): void;
132
132
  toggleCenterLine(): void;
133
133
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
134
- activateTrackSelector(): void;
134
+ activateTrackSelector(): import("@jbrowse/core/util").Widget;
135
135
  navToLocString(locString: string, optAssemblyName?: string | undefined): void;
136
136
  navTo(query: import("..").NavLocation): void;
137
137
  navToMultiple(locations: import("..").NavLocation[]): void;
@@ -139,10 +139,15 @@ declare const _default: React.ForwardRefExoticComponent<{
139
139
  getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
140
140
  start: number;
141
141
  end: number;
142
+ regionNumber?: number | undefined;
143
+ reversed?: boolean | undefined;
142
144
  refName: string;
143
145
  assemblyName: string;
144
146
  key: string;
145
147
  offsetPx: number;
148
+ widthPx: number;
149
+ variant?: string | undefined;
150
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
146
151
  }[];
147
152
  afterDisplayedRegionsSet(cb: Function): void;
148
153
  moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
@@ -164,10 +169,15 @@ declare const _default: React.ForwardRefExoticComponent<{
164
169
  readonly roundedDynamicBlocks: {
165
170
  start: number;
166
171
  end: number;
172
+ regionNumber?: number | undefined;
173
+ reversed?: boolean | undefined;
167
174
  refName: string;
168
175
  assemblyName: string;
169
176
  key: string;
170
177
  offsetPx: number;
178
+ widthPx: number;
179
+ variant?: string | undefined;
180
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
171
181
  }[];
172
182
  readonly visibleLocStrings: string;
173
183
  readonly coarseVisibleLocStrings: string;
@@ -310,7 +320,7 @@ declare const _default: React.ForwardRefExoticComponent<{
310
320
  setTrackLabels(setting: "overlapping" | "hidden" | "offset"): void;
311
321
  toggleCenterLine(): void;
312
322
  setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
313
- activateTrackSelector(): void;
323
+ activateTrackSelector(): import("@jbrowse/core/util").Widget;
314
324
  navToLocString(locString: string, optAssemblyName?: string | undefined): void;
315
325
  navTo(query: import("..").NavLocation): void;
316
326
  navToMultiple(locations: import("..").NavLocation[]): void;
@@ -318,10 +328,15 @@ declare const _default: React.ForwardRefExoticComponent<{
318
328
  getSelectedRegions(leftOffset: import("..").BpOffset | undefined, rightOffset: import("..").BpOffset | undefined): {
319
329
  start: number;
320
330
  end: number;
331
+ regionNumber?: number | undefined;
332
+ reversed?: boolean | undefined;
321
333
  refName: string;
322
334
  assemblyName: string;
323
335
  key: string;
324
336
  offsetPx: number;
337
+ widthPx: number;
338
+ variant?: string | undefined;
339
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
325
340
  }[];
326
341
  afterDisplayedRegionsSet(cb: Function): void;
327
342
  moveTo(start: import("..").BpOffset, end: import("..").BpOffset): void;
@@ -343,10 +358,15 @@ declare const _default: React.ForwardRefExoticComponent<{
343
358
  readonly roundedDynamicBlocks: {
344
359
  start: number;
345
360
  end: number;
361
+ regionNumber?: number | undefined;
362
+ reversed?: boolean | undefined;
346
363
  refName: string;
347
364
  assemblyName: string;
348
365
  key: string;
349
366
  offsetPx: number;
367
+ widthPx: number;
368
+ variant?: string | undefined;
369
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
350
370
  }[];
351
371
  readonly visibleLocStrings: string;
352
372
  readonly coarseVisibleLocStrings: string;
package/dist/LinearGenomeView/components/util.d.ts ADDED
@@ -0,0 +1,2 @@
1
+ import BaseResult from '@jbrowse/core/TextSearch/BaseResults';
2
+ export declare function dedupe(results?: BaseResult[]): BaseResult[] | undefined;
package/dist/LinearGenomeView/index.d.ts CHANGED
@@ -5,6 +5,7 @@ import { BlockSet, BaseBlock } from '@jbrowse/core/util/blockTypes';
5
5
  import { Instance } from 'mobx-state-tree';
6
6
  import PluginManager from '@jbrowse/core/PluginManager';
7
7
  import { renderToSvg } from './components/LinearGenomeView';
8
+ import RefNameAutocomplete from './components/RefNameAutocomplete';
8
9
  export { default as ReactComponent } from './components/LinearGenomeView';
9
10
  export interface BpOffset {
10
11
  refName?: string;
@@ -174,7 +175,7 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
174
175
  setTrackLabels(setting: 'overlapping' | 'offset' | 'hidden'): void;
175
176
  toggleCenterLine(): void;
176
177
  setDisplayedRegions(regions: Region[]): void;
177
- activateTrackSelector(): void;
178
+ activateTrackSelector(): import("@jbrowse/core/util").Widget;
178
179
  navToLocString(locString: string, optAssemblyName?: string | undefined): void;
179
180
  /**
180
181
  * Navigate to a location based on its refName and optionally start, end,
@@ -210,10 +211,15 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
210
211
  getSelectedRegions(leftOffset: BpOffset | undefined, rightOffset: BpOffset | undefined): {
211
212
  start: number;
212
213
  end: number;
214
+ regionNumber?: number | undefined;
215
+ reversed?: boolean | undefined;
213
216
  refName: string;
214
217
  assemblyName: string;
215
218
  key: string;
216
219
  offsetPx: number;
220
+ widthPx: number;
221
+ variant?: string | undefined;
222
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
217
223
  }[];
218
224
  afterDisplayedRegionsSet(cb: Function): void;
219
225
  /**
@@ -249,10 +255,15 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
249
255
  readonly roundedDynamicBlocks: {
250
256
  start: number;
251
257
  end: number;
258
+ regionNumber?: number | undefined;
259
+ reversed?: boolean | undefined;
252
260
  refName: string;
253
261
  assemblyName: string;
254
262
  key: string;
255
263
  offsetPx: number;
264
+ widthPx: number;
265
+ variant?: string | undefined;
266
+ isLeftEndOfDisplayedRegion?: boolean | undefined;
256
267
  }[];
257
268
  readonly visibleLocStrings: string;
258
269
  readonly coarseVisibleLocStrings: string;
@@ -265,6 +276,6 @@ export declare function stateModelFactory(pluginManager: PluginManager): import(
265
276
  } & {
266
277
  rubberBandMenuItems(): MenuItem[];
267
278
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
268
- export { renderToSvg };
279
+ export { renderToSvg, RefNameAutocomplete };
269
280
  export declare type LinearGenomeViewStateModel = ReturnType<typeof stateModelFactory>;
270
281
  export declare type LinearGenomeViewModel = Instance<LinearGenomeViewStateModel>;
package/dist/index.d.ts CHANGED
@@ -3,7 +3,7 @@ import Plugin from '@jbrowse/core/Plugin';
3
3
  import PluginManager from '@jbrowse/core/PluginManager';
4
4
  import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, BlockModel } from './BaseLinearDisplay';
5
5
  import { configSchemaFactory as linearBareDisplayConfigSchemaFactory } from './LinearBareDisplay';
6
- import { LinearGenomeViewModel, LinearGenomeViewStateModel, renderToSvg } from './LinearGenomeView';
6
+ import { LinearGenomeViewModel, LinearGenomeViewStateModel, renderToSvg, RefNameAutocomplete } from './LinearGenomeView';
7
7
  import { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory } from './LinearBasicDisplay';
8
8
  export default class LinearGenomeViewPlugin extends Plugin {
9
9
  name: string;
@@ -37,7 +37,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
37
37
  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
38
38
  layout: any;
39
39
  status: string;
40
- error: Error | undefined;
40
+ error: unknown;
41
41
  message: string | undefined;
42
42
  maxHeightReached: boolean;
43
43
  ReactComponent: ({ model, }: {
@@ -57,14 +57,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
57
57
  maxHeightReached: boolean;
58
58
  renderProps: any;
59
59
  } | undefined): void;
60
- setError(error: Error): void;
60
+ setError(error: unknown): void;
61
61
  reload(): void;
62
62
  beforeDestroy(): void;
63
63
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
64
64
  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
65
65
  }> & {
66
66
  rendererTypeName: string;
67
- error: Error | undefined;
67
+ error: unknown;
68
68
  } & {
69
69
  readonly RenderingComponent: import("react").FC<{
70
70
  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -73,14 +73,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
73
73
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
74
74
  }> & {
75
75
  rendererTypeName: string;
76
- error: Error | undefined;
76
+ error: unknown;
77
77
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
78
78
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
79
79
  type: import("mobx-state-tree").ISimpleType<string>;
80
80
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
81
81
  }, {
82
82
  rendererTypeName: string;
83
- error: Error | undefined;
83
+ error: unknown;
84
84
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
85
85
  onHorizontalScroll?: Function | undefined;
86
86
  blockState?: Record<string, any> | undefined;
@@ -92,14 +92,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
92
92
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
93
93
  }> & {
94
94
  rendererTypeName: string;
95
- error: Error | undefined;
95
+ error: unknown;
96
96
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
97
97
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
98
98
  type: import("mobx-state-tree").ISimpleType<string>;
99
99
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
100
100
  }, {
101
101
  rendererTypeName: string;
102
- error: Error | undefined;
102
+ error: unknown;
103
103
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
104
104
  }> | null;
105
105
  readonly adapterConfig: any;
@@ -111,7 +111,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
111
111
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
112
112
  regionCannotBeRendered(): undefined;
113
113
  } & {
114
- setError(error?: Error | undefined): void;
114
+ setError(error?: unknown): void;
115
115
  setRpcDriverName(rpcDriverName: string): void;
116
116
  reload(): void;
117
117
  } & {
@@ -190,7 +190,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
190
190
  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
191
191
  layout: any;
192
192
  status: string;
193
- error: Error | undefined;
193
+ error: unknown;
194
194
  message: string | undefined;
195
195
  maxHeightReached: boolean;
196
196
  ReactComponent: ({ model, }: {
@@ -210,14 +210,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
210
210
  maxHeightReached: boolean;
211
211
  renderProps: any;
212
212
  } | undefined): void;
213
- setError(error: Error): void;
213
+ setError(error: unknown): void;
214
214
  reload(): void;
215
215
  beforeDestroy(): void;
216
216
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
217
217
  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
218
218
  }, {
219
219
  rendererTypeName: string;
220
- error: Error | undefined;
220
+ error: unknown;
221
221
  } & {
222
222
  readonly RenderingComponent: import("react").FC<{
223
223
  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -226,14 +226,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
226
226
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
227
227
  }> & {
228
228
  rendererTypeName: string;
229
- error: Error | undefined;
229
+ error: unknown;
230
230
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
231
231
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
232
232
  type: import("mobx-state-tree").ISimpleType<string>;
233
233
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
234
234
  }, {
235
235
  rendererTypeName: string;
236
- error: Error | undefined;
236
+ error: unknown;
237
237
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
238
238
  onHorizontalScroll?: Function | undefined;
239
239
  blockState?: Record<string, any> | undefined;
@@ -245,14 +245,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
245
245
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
246
246
  }> & {
247
247
  rendererTypeName: string;
248
- error: Error | undefined;
248
+ error: unknown;
249
249
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
250
250
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
251
251
  type: import("mobx-state-tree").ISimpleType<string>;
252
252
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
253
253
  }, {
254
254
  rendererTypeName: string;
255
- error: Error | undefined;
255
+ error: unknown;
256
256
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
257
257
  }> | null;
258
258
  readonly adapterConfig: any;
@@ -264,7 +264,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
264
264
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
265
265
  regionCannotBeRendered(): undefined;
266
266
  } & {
267
- setError(error?: Error | undefined): void;
267
+ setError(error?: unknown): void;
268
268
  setRpcDriverName(rpcDriverName: string): void;
269
269
  reload(): void;
270
270
  } & {
@@ -352,7 +352,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
352
352
  features: Map<string, import("@jbrowse/core/util/simpleFeature").Feature> | undefined;
353
353
  layout: any;
354
354
  status: string;
355
- error: Error | undefined;
355
+ error: unknown;
356
356
  message: string | undefined;
357
357
  maxHeightReached: boolean;
358
358
  ReactComponent: ({ model, }: {
@@ -372,14 +372,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
372
372
  maxHeightReached: boolean;
373
373
  renderProps: any;
374
374
  } | undefined): void;
375
- setError(error: Error): void;
375
+ setError(error: unknown): void;
376
376
  reload(): void;
377
377
  beforeDestroy(): void;
378
378
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
379
379
  userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>;
380
380
  }, {
381
381
  rendererTypeName: string;
382
- error: Error | undefined;
382
+ error: unknown;
383
383
  } & {
384
384
  readonly RenderingComponent: import("react").FC<{
385
385
  model: import("mobx-state-tree").ModelInstanceTypeProps<{
@@ -388,14 +388,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
388
388
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
389
389
  }> & {
390
390
  rendererTypeName: string;
391
- error: Error | undefined;
391
+ error: unknown;
392
392
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
393
393
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
394
394
  type: import("mobx-state-tree").ISimpleType<string>;
395
395
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
396
396
  }, {
397
397
  rendererTypeName: string;
398
- error: Error | undefined;
398
+ error: unknown;
399
399
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
400
400
  onHorizontalScroll?: Function | undefined;
401
401
  blockState?: Record<string, any> | undefined;
@@ -407,14 +407,14 @@ export default class LinearGenomeViewPlugin extends Plugin {
407
407
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
408
408
  }> & {
409
409
  rendererTypeName: string;
410
- error: Error | undefined;
410
+ error: unknown;
411
411
  } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{
412
412
  id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
413
413
  type: import("mobx-state-tree").ISimpleType<string>;
414
414
  rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
415
415
  }, {
416
416
  rendererTypeName: string;
417
- error: Error | undefined;
417
+ error: unknown;
418
418
  }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
419
419
  }> | null;
420
420
  readonly adapterConfig: any;
@@ -426,7 +426,7 @@ export default class LinearGenomeViewPlugin extends Plugin {
426
426
  readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[];
427
427
  regionCannotBeRendered(): undefined;
428
428
  } & {
429
- setError(error?: Error | undefined): void;
429
+ setError(error?: unknown): void;
430
430
  setRpcDriverName(rpcDriverName: string): void;
431
431
  reload(): void;
432
432
  } & {
@@ -489,6 +489,6 @@ export default class LinearGenomeViewPlugin extends Plugin {
489
489
  install(pluginManager: PluginManager): void;
490
490
  configure(pluginManager: PluginManager): void;
491
491
  }
492
- export { BaseLinearDisplayComponent, BaseLinearDisplay, baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, };
492
+ export { BaseLinearDisplayComponent, BaseLinearDisplay, baseLinearDisplayConfigSchema, linearBareDisplayConfigSchemaFactory, linearBasicDisplayConfigSchemaFactory, linearBasicDisplayModelFactory, renderToSvg, RefNameAutocomplete, };
493
493
  export type { LinearGenomeViewModel, LinearGenomeViewStateModel, BlockModel };
494
494
  export type { BaseLinearDisplayModel } from './BaseLinearDisplay';