@jbrowse/plugin-linear-comparative-view 3.7.0 → 4.0.0

package/dist/LinearSyntenyView/model.d.ts

@@ -1,702 +0,0 @@
-import { Curves } from './components/Icons';
-import type { ExportSvgOptions, ImportFormSyntenyTrack } from './types';
-import type PluginManager from '@jbrowse/core/PluginManager';
-import type { Instance } from 'mobx-state-tree';
-export default function stateModelFactory(pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-} & {
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"LinearComparativeView">;
-    trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
-    showIntraviewLinks: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    linkViews: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    interactiveOverlay: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    showDynamicControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    levels: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        height: import("mobx-state-tree").IType<number | undefined, number, number>;
-        level: import("mobx-state-tree").ISimpleType<number>;
-    }, {
-        setHeight(n: number): number;
-        showTrack(trackId: string, initialSnapshot?: {}): void;
-        hideTrack(trackId: string): number;
-        toggleTrack(trackId: string): boolean;
-    } & {
-        readonly assemblyNames: (string | undefined)[];
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
-    }, {
-        width: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        setDisplayName(name: string): void;
-        setWidth(newWidth: number): void;
-        setMinimized(flag: boolean): void;
-    } & {
-        volatileWidth: number | undefined;
-        minimumBlockWidth: number;
-        draggingTrackId: undefined | string;
-        volatileError: unknown;
-        afterDisplayedRegionsSetCallbacks: (() => void)[];
-        scaleFactor: number;
-        trackRefs: Record<string, HTMLDivElement>;
-        coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        coarseTotalBp: number;
-        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
-        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
-    } & {
-        readonly pinnedTracks: any[];
-        readonly unpinnedTracks: any[];
-        readonly trackLabelsSetting: any;
-        readonly width: number;
-        readonly interRegionPaddingWidth: number;
-        readonly assemblyNames: string[];
-        readonly assemblyDisplayNames: string[];
-        readonly isTopLevelView: boolean;
-        readonly stickyViewHeaders: boolean;
-        readonly rubberbandTop: number;
-        readonly pinnedTracksTop: number;
-    } & {
-        scaleBarDisplayPrefix(): string | undefined;
-        MiniControlsComponent(): React.FC<any>;
-        HeaderComponent(): React.FC<any>;
-        readonly assembliesNotFound: string | undefined;
-        readonly assemblyErrors: string;
-        readonly assembliesInitialized: boolean;
-        readonly initialized: boolean;
-        readonly hasDisplayedRegions: boolean;
-        readonly scaleBarHeight: number;
-        readonly headerHeight: number;
-        readonly trackHeights: number;
-        readonly trackHeightsWithResizeHandles: number;
-        readonly height: number;
-        readonly totalBp: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly error: unknown;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly displayedRegionsTotalPx: number;
-        renderProps(): any;
-        searchScope(assemblyName: string): {
-            assemblyName: string;
-            includeAggregateIndexes: boolean;
-            tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-        };
-        getTrack(id: string): any;
-        rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-        rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-        readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-    } & {
-        setShowTrackOutlines(arg: boolean): void;
-        setColorByCDS(flag: boolean): void;
-        setShowCytobands(flag: boolean): void;
-        setWidth(newWidth: number): void;
-        setError(error: unknown): void;
-        setHideHeader(b: boolean): void;
-        setHideHeaderOverview(b: boolean): void;
-        setHideNoTracksActive(b: boolean): void;
-        setShowGridlines(b: boolean): void;
-        addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
-        setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[]): void;
-        removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
-        scrollTo(offsetPx: number): number;
-        zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
-        setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
-        setNewView(bpPerPx: number, offsetPx: number): void;
-        horizontallyFlip(): void;
-        showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-        hideTrack(trackId: string): number;
-    } & {
-        moveTrackDown(id: string): void;
-        moveTrackUp(id: string): void;
-        moveTrackToTop(id: string): void;
-        moveTrackToBottom(id: string): void;
-        moveTrack(movingId: string, targetId: string): void;
-        toggleTrack(trackId: string): boolean;
-        setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
-        setShowCenterLine(b: boolean): void;
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        activateTrackSelector(): import("@jbrowse/core/util").Widget;
-        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): {
-            start: number;
-            end: number;
-            type: string;
-            regionNumber?: number;
-            reversed?: boolean;
-            refName: string;
-            assemblyName: string;
-            key: string;
-            offsetPx: number;
-            widthPx: number;
-            variant?: string;
-            isLeftEndOfDisplayedRegion?: boolean;
-        }[];
-        afterDisplayedRegionsSet(cb: () => void): void;
-        horizontalScroll(distance: number): number;
-        center(): void;
-        showAllRegions(): void;
-        showAllRegionsInAssembly(assemblyName?: string): void;
-        setDraggingTrackId(idx?: string): void;
-        setScaleFactor(factor: number): void;
-        clearView(): void;
-        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState): void;
-        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").ExportSvgOptions): Promise<void>;
-    } & {
-        slide: (viewWidths: number) => void;
-    } & {
-        zoom: (targetBpPerPx: number) => void;
-    } & {
-        readonly canShowCytobands: boolean;
-        readonly showCytobands: boolean;
-        readonly anyCytobandsExist: boolean;
-        readonly cytobandOffset: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        readonly visibleLocStrings: string;
-        readonly coarseVisibleLocStrings: string;
-    } & {
-        setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-    } & {
-        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
-        navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
-        navToSearchString({ input, assembly, }: {
-            input: string;
-            assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
-        }): Promise<void>;
-        navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
-        navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
-        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
-        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
-    } & {
-        rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number;
-        }): {
-            index: number;
-            offsetPx: number;
-        } | undefined;
-        centerAt(coord: number, refName: string, regionNumber?: number): void;
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        };
-        readonly centerLineInfo: {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        } | undefined;
-    } & {
-        afterCreate(): void;
-        afterAttach(): void;
-    }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
-    }>>, {
-        id: string;
-        type: string;
-        displayName: string | undefined;
-        tracks: any[];
-        minimized: boolean;
-        offsetPx: number;
-        bpPerPx: number;
-        displayedRegions: import("@jbrowse/core/util").Region[];
-        hideHeader: boolean;
-        hideHeaderOverview: boolean;
-        hideNoTracksActive: boolean;
-        trackSelectorType: string;
-        showCenterLine: boolean;
-        showCytobandsSetting: boolean;
-        trackLabels: string;
-        showGridlines: boolean;
-        highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[];
-        colorByCDS: boolean;
-        showTrackOutlines: boolean;
-    }>>;
-    viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-} & {
-    type: import("mobx-state-tree").ISimpleType<"LinearSyntenyView">;
-    drawCIGAR: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    drawCIGARMatchesOnly: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    drawCurves: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    drawLocationMarkers: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-}, {
-    width: number;
-} & {
-    menuItems(): import("@jbrowse/core/ui").MenuItem[];
-} & {
-    setDisplayName(name: string): void;
-    setWidth(newWidth: number): void;
-    setMinimized(flag: boolean): void;
-} & {
-    width: number | undefined;
-} & {
-    readonly initialized: boolean;
-    readonly refNames: string[][];
-    readonly assemblyNames: string[];
-} & {
-    afterAttach(): void;
-    beforeDestroy(): void;
-    onSubviewAction(actionName: string, path: string, args?: unknown[]): void;
-    setWidth(newWidth: number): void;
-    setViews(views: import("mobx-state-tree").SnapshotIn<import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel>[]): void;
-    removeView(view: import("@jbrowse/plugin-linear-genome-view").LinearGenomeViewModel): void;
-    setLevelHeight(newHeight: number, level?: number): number;
-    setLinkViews(arg: boolean): void;
-    setShowDynamicControls(arg: boolean): void;
-    activateTrackSelector(level: number): import("@jbrowse/core/util").Widget;
-    toggleTrack(trackId: string, level?: number): void;
-    showTrack(trackId: string, level?: number, initialSnapshot?: {}): void;
-    hideTrack(trackId: string, level?: number): void;
-    squareView(): void;
-    clearView(): void;
-} & {
-    headerMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-} & {
-    menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    rubberBandMenuItems(): {
-        label: string;
-        onClick: () => void;
-    }[];
-} & {
-    afterAttach(): void;
-} & {
-    importFormSyntenyTrackSelections: import("mobx").IObservableArray<ImportFormSyntenyTrack>;
-} & {
-    importFormRemoveRow(idx: number): void;
-    clearImportFormSyntenyTracks(): void;
-    setImportFormSyntenyTrack(arg: number, val: ImportFormSyntenyTrack): void;
-    setDrawCurves(arg: boolean): void;
-    setDrawCIGAR(arg: boolean): void;
-    setDrawCIGARMatchesOnly(arg: boolean): void;
-    setDrawLocationMarkers(arg: boolean): void;
-    showAllRegions(): void;
-} & {
-    exportSvg(opts: ExportSvgOptions): Promise<void>;
-} & {
-    headerMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
-        label: string;
-        onClick: () => void;
-        description: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        helpText: string;
-        type?: undefined;
-        checked?: undefined;
-        subMenu?: undefined;
-    } | {
-        label: string;
-        type: string;
-        checked: boolean;
-        onClick: () => void;
-        helpText: string;
-        description?: undefined;
-        icon?: undefined;
-        subMenu?: undefined;
-    } | {
-        label: string;
-        subMenu: ({
-            label: string;
-            checked: boolean;
-            type: string;
-            description: string;
-            onClick: () => void;
-            helpText: string;
-            icon?: undefined;
-        } | {
-            label: string;
-            type: string;
-            checked: boolean;
-            icon: typeof Curves;
-            onClick: () => void;
-            helpText: string;
-            description?: undefined;
-        })[];
-        onClick?: undefined;
-        description?: undefined;
-        icon?: undefined;
-        helpText?: undefined;
-        type?: undefined;
-        checked?: undefined;
-    } | {
-        label: string;
-        type: string;
-        checked: boolean;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-        helpText: string;
-        description?: undefined;
-        subMenu?: undefined;
-    } | {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-        helpText: string;
-        description?: undefined;
-        type?: undefined;
-        checked?: undefined;
-        subMenu?: undefined;
-    })[];
-    menuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
-        label: string;
-        icon: import("@mui/material/OverridableComponent").OverridableComponent<import("@mui/material").SvgIconTypeMap<{}, "svg">> & {
-            muiName: string;
-        };
-        onClick: () => void;
-    })[];
-}, {
-    type: "LinearComparativeView";
-} & Partial<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-    minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-} & {
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"LinearComparativeView">;
-    trackSelectorType: import("mobx-state-tree").IType<string | undefined, string, string>;
-    showIntraviewLinks: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    linkViews: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    interactiveOverlay: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    showDynamicControls: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    levels: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        height: import("mobx-state-tree").IType<number | undefined, number, number>;
-        level: import("mobx-state-tree").ISimpleType<number>;
-    }, {
-        setHeight(n: number): number;
-        showTrack(trackId: string, initialSnapshot?: {}): void;
-        hideTrack(trackId: string): number;
-        toggleTrack(trackId: string): boolean;
-    } & {
-        readonly assemblyNames: (string | undefined)[];
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    views: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
-    }, {
-        width: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        setDisplayName(name: string): void;
-        setWidth(newWidth: number): void;
-        setMinimized(flag: boolean): void;
-    } & {
-        volatileWidth: number | undefined;
-        minimumBlockWidth: number;
-        draggingTrackId: undefined | string;
-        volatileError: unknown;
-        afterDisplayedRegionsSetCallbacks: (() => void)[];
-        scaleFactor: number;
-        trackRefs: Record<string, HTMLDivElement>;
-        coarseDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        coarseTotalBp: number;
-        leftOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
-        rightOffset: undefined | import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset;
-    } & {
-        readonly pinnedTracks: any[];
-        readonly unpinnedTracks: any[];
-        readonly trackLabelsSetting: any;
-        readonly width: number;
-        readonly interRegionPaddingWidth: number;
-        readonly assemblyNames: string[];
-        readonly assemblyDisplayNames: string[];
-        readonly isTopLevelView: boolean;
-        readonly stickyViewHeaders: boolean;
-        readonly rubberbandTop: number;
-        readonly pinnedTracksTop: number;
-    } & {
-        scaleBarDisplayPrefix(): string | undefined;
-        MiniControlsComponent(): React.FC<any>;
-        HeaderComponent(): React.FC<any>;
-        readonly assembliesNotFound: string | undefined;
-        readonly assemblyErrors: string;
-        readonly assembliesInitialized: boolean;
-        readonly initialized: boolean;
-        readonly hasDisplayedRegions: boolean;
-        readonly scaleBarHeight: number;
-        readonly headerHeight: number;
-        readonly trackHeights: number;
-        readonly trackHeightsWithResizeHandles: number;
-        readonly height: number;
-        readonly totalBp: number;
-        readonly maxBpPerPx: number;
-        readonly minBpPerPx: number;
-        readonly error: unknown;
-        readonly maxOffset: number;
-        readonly minOffset: number;
-        readonly displayedRegionsTotalPx: number;
-        renderProps(): any;
-        searchScope(assemblyName: string): {
-            assemblyName: string;
-            includeAggregateIndexes: boolean;
-            tracks: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IAnyType> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>>;
-        };
-        getTrack(id: string): any;
-        rankSearchResults(results: import("@jbrowse/core/TextSearch/BaseResults").default[]): import("@jbrowse/core/TextSearch/BaseResults").default[];
-        rewriteOnClicks(trackType: string, viewMenuActions: import("@jbrowse/core/ui").MenuItem[]): void;
-        readonly trackTypeActions: Map<string, import("@jbrowse/core/ui").MenuItem[]>;
-    } & {
-        setShowTrackOutlines(arg: boolean): void;
-        setColorByCDS(flag: boolean): void;
-        setShowCytobands(flag: boolean): void;
-        setWidth(newWidth: number): void;
-        setError(error: unknown): void;
-        setHideHeader(b: boolean): void;
-        setHideHeaderOverview(b: boolean): void;
-        setHideNoTracksActive(b: boolean): void;
-        setShowGridlines(b: boolean): void;
-        addToHighlights(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
-        setHighlight(highlight?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[]): void;
-        removeHighlight(highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType): void;
-        scrollTo(offsetPx: number): number;
-        zoomTo(bpPerPx: number, offset?: number, centerAtOffset?: boolean): number;
-        setOffsets(left?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, right?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
-        setSearchResults(searchResults: import("@jbrowse/core/TextSearch/BaseResults").default[], searchQuery: string, assemblyName?: string): void;
-        setNewView(bpPerPx: number, offsetPx: number): void;
-        horizontallyFlip(): void;
-        showTrack(trackId: string, initialSnapshot?: {}, displayInitialSnapshot?: {}): any;
-        hideTrack(trackId: string): number;
-    } & {
-        moveTrackDown(id: string): void;
-        moveTrackUp(id: string): void;
-        moveTrackToTop(id: string): void;
-        moveTrackToBottom(id: string): void;
-        moveTrack(movingId: string, targetId: string): void;
-        toggleTrack(trackId: string): boolean;
-        setTrackLabels(setting: "overlapping" | "offset" | "hidden"): void;
-        setShowCenterLine(b: boolean): void;
-        setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
-        activateTrackSelector(): import("@jbrowse/core/util").Widget;
-        getSelectedRegions(leftOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, rightOffset?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): {
-            start: number;
-            end: number;
-            type: string;
-            regionNumber?: number;
-            reversed?: boolean;
-            refName: string;
-            assemblyName: string;
-            key: string;
-            offsetPx: number;
-            widthPx: number;
-            variant?: string;
-            isLeftEndOfDisplayedRegion?: boolean;
-        }[];
-        afterDisplayedRegionsSet(cb: () => void): void;
-        horizontalScroll(distance: number): number;
-        center(): void;
-        showAllRegions(): void;
-        showAllRegionsInAssembly(assemblyName?: string): void;
-        setDraggingTrackId(idx?: string): void;
-        setScaleFactor(factor: number): void;
-        clearView(): void;
-        setInit(arg?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState): void;
-        exportSvg(opts?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").ExportSvgOptions): Promise<void>;
-    } & {
-        slide: (viewWidths: number) => void;
-    } & {
-        zoom: (targetBpPerPx: number) => void;
-    } & {
-        readonly canShowCytobands: boolean;
-        readonly showCytobands: boolean;
-        readonly anyCytobandsExist: boolean;
-        readonly cytobandOffset: number;
-    } & {
-        menuItems(): import("@jbrowse/core/ui").MenuItem[];
-    } & {
-        readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
-        readonly roundedDynamicBlocks: import("@jbrowse/core/util/blockTypes").BaseBlock[];
-        readonly visibleLocStrings: string;
-        readonly coarseVisibleLocStrings: string;
-    } & {
-        setCoarseDynamicBlocks(blocks: import("@jbrowse/core/util/blockTypes").BlockSet): void;
-    } & {
-        moveTo(start?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset, end?: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").BpOffset): void;
-        navToLocString(input: string, optAssemblyName?: string, grow?: number): Promise<void>;
-        navToSearchString({ input, assembly, }: {
-            input: string;
-            assembly: import("@jbrowse/core/assemblyManager/assembly").Assembly;
-        }): Promise<void>;
-        navToLocation(parsedLocString: import("@jbrowse/core/util").ParsedLocString, assemblyName?: string, grow?: number): Promise<void>;
-        navToLocations(regions: import("@jbrowse/core/util").ParsedLocString[], assemblyName?: string, grow?: number): Promise<void>;
-        navTo(query: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation): void;
-        navToMultiple(locations: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").NavLocation[]): void;
-    } & {
-        rubberBandMenuItems(): import("@jbrowse/core/ui").MenuItem[];
-        bpToPx({ refName, coord, regionNumber, }: {
-            refName: string;
-            coord: number;
-            regionNumber?: number;
-        }): {
-            index: number;
-            offsetPx: number;
-        } | undefined;
-        centerAt(coord: number, refName: string, regionNumber?: number): void;
-        pxToBp(px: number): {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        };
-        readonly centerLineInfo: {
-            coord: number;
-            index: number;
-            refName: string;
-            oob: boolean;
-            assemblyName: string;
-            offset: number;
-            start: number;
-            end: number;
-            reversed?: boolean;
-        } | undefined;
-    } & {
-        afterCreate(): void;
-        afterAttach(): void;
-    }, import("mobx-state-tree").ModelCreationType<import("mobx-state-tree/dist/internal").ExtractCFromProps<{
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>;
-        minimized: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-    } & {
-        id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        type: import("mobx-state-tree").IType<string | undefined, string, string>;
-        offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
-        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
-        tracks: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyType>;
-        hideHeader: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideHeaderOverview: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        hideNoTracksActive: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        trackSelectorType: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showCenterLine: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showCytobandsSetting: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        trackLabels: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        showGridlines: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
-        highlight: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType>>, [undefined]>;
-        colorByCDS: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        showTrackOutlines: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        init: import("mobx-state-tree").IType<import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined, import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").InitState | undefined>;
-    }>>, {
-        id: string;
-        type: string;
-        displayName: string | undefined;
-        tracks: any[];
-        minimized: boolean;
-        offsetPx: number;
-        bpPerPx: number;
-        displayedRegions: import("@jbrowse/core/util").Region[];
-        hideHeader: boolean;
-        hideHeaderOverview: boolean;
-        hideNoTracksActive: boolean;
-        trackSelectorType: string;
-        showCenterLine: boolean;
-        showCytobandsSetting: boolean;
-        trackLabels: string;
-        showGridlines: boolean;
-        highlight: import("@jbrowse/plugin-linear-genome-view/src/LinearGenomeView/types").HighlightType[];
-        colorByCDS: boolean;
-        showTrackOutlines: boolean;
-    }>>;
-    viewTrackConfigs: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IAnyModelType>;
-}>> & import("mobx-state-tree/dist/internal").NonEmptyObject & import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export type LinearSyntenyViewStateModel = ReturnType<typeof stateModelFactory>;
-export type LinearSyntenyViewModel = Instance<LinearSyntenyViewStateModel>;