@jbrowse/plugin-linear-comparative-view 3.7.0 → 4.0.0

package/dist/LinearSyntenyView/components/ImportForm/selectors/SwapAssemblies.d.ts

@@ -1,13 +0,0 @@
-import type { ReactNode } from 'react';
-export interface SwapAssembliesProps {
-    assembly1?: string;
-    assembly2?: string;
-    swap?: boolean;
-    setSwap?: (arg: boolean) => void;
-    radioOption: string;
-    helpContent?: ReactNode;
-    text1: string;
-    text2: string;
-}
-declare const SwapAssemblies: ({ assembly1, assembly2, swap, setSwap, radioOption, helpContent, text1, text2, }: SwapAssembliesProps) => import("react/jsx-runtime").JSX.Element;
-export default SwapAssemblies;

package/dist/LinearSyntenyView/components/ImportForm/selectors/SwapAssemblies.js

@@ -1,32 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const Help_1 = __importDefault(require("@mui/icons-material/Help"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const SelectorTypes_1 = require("./SelectorTypes");
-const useStyles = (0, mui_1.makeStyles)()({
-    row: {
-        display: 'flex',
-        gap: 20,
-    },
-    swap: {
-        display: 'grid',
-        gridTemplateColumns: '1fr 1fr',
-        gap: 4,
-        alignItems: 'center',
-    },
-});
-const SwapAssemblies = (0, mobx_react_1.observer)(function ({ assembly1, assembly2, swap, setSwap, radioOption, helpContent, text1, text2, }) {
-    const { classes } = useStyles();
-    return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { children: ["Verify or click swap", (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: helpContent || (0, jsx_runtime_1.jsx)("code", { children: SelectorTypes_1.helpStrings[radioOption] }), children: (0, jsx_runtime_1.jsx)(Help_1.default, {}) })] }), (0, jsx_runtime_1.jsxs)("div", { className: classes.row, children: [(0, jsx_runtime_1.jsxs)("div", { className: classes.swap, children: [(0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly2 : assembly1 }) }), (0, jsx_runtime_1.jsx)("div", { children: text1 }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly1 : assembly2 }) }), (0, jsx_runtime_1.jsx)("div", { children: text2 })] }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", onClick: () => {
-                            if (setSwap) {
-                                setSwap(!swap);
-                            }
-                        }, children: "Swap?" })] })] }));
-});
-exports.default = SwapAssemblies;

package/dist/LinearSyntenyView/components/ImportForm/selectors/index.d.ts

@@ -1,4 +0,0 @@
-export { default as StandardFormatSelector } from './StandardFormatSelector';
-export { default as PifGzSelector } from './PifGzSelector';
-export { default as AnchorsSelector } from './AnchorsSelector';
-export * from './SelectorTypes';

package/dist/LinearSyntenyView/components/ImportForm/selectors/index.js

@@ -1,27 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.AnchorsSelector = exports.PifGzSelector = exports.StandardFormatSelector = void 0;
-var StandardFormatSelector_1 = require("./StandardFormatSelector");
-Object.defineProperty(exports, "StandardFormatSelector", { enumerable: true, get: function () { return __importDefault(StandardFormatSelector_1).default; } });
-var PifGzSelector_1 = require("./PifGzSelector");
-Object.defineProperty(exports, "PifGzSelector", { enumerable: true, get: function () { return __importDefault(PifGzSelector_1).default; } });
-var AnchorsSelector_1 = require("./AnchorsSelector");
-Object.defineProperty(exports, "AnchorsSelector", { enumerable: true, get: function () { return __importDefault(AnchorsSelector_1).default; } });
-__exportStar(require("./SelectorTypes"), exports);

package/dist/LinearSyntenyView/components/ImportForm/util.d.ts

@@ -1,10 +0,0 @@
-export declare function getName(sessionTrackData?: {
-    uri: string;
-} | {
-    localPath: string;
-} | {
-    name: string;
-}): any;
-export declare function stripGz(fileName: string): string;
-export declare function basename(str: string): string | undefined;
-export declare function extName(str: string): string;

package/dist/LinearSyntenyView/components/ImportForm/util.js

@@ -1,24 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getName = getName;
-exports.stripGz = stripGz;
-exports.basename = basename;
-exports.extName = extName;
-function getName(sessionTrackData) {
-    return sessionTrackData
-        ?
-            sessionTrackData.uri ||
-                sessionTrackData.localPath ||
-                sessionTrackData.name
-        : undefined;
-}
-function stripGz(fileName) {
-    return fileName.endsWith('.gz') ? fileName.slice(0, -3) : fileName;
-}
-function basename(str) {
-    return str.split('#')[0].split('?')[0].split('/').pop();
-}
-function extName(str) {
-    const r = str.split('.').pop();
-    return r ? `.${r}` : '';
-}

package/dist/LinearSyntenyView/components/LinearSyntenyView.d.ts

@@ -1,5 +0,0 @@
-import type { LinearSyntenyViewModel } from '../model';
-declare const LinearSyntenyView: ({ model, }: {
-    model: LinearSyntenyViewModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default LinearSyntenyView;

package/dist/LinearSyntenyView/components/LinearSyntenyView.js

@@ -1,47 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const mobx_react_1 = require("mobx-react");
-const LinearComparativeView_1 = __importDefault(require("../../LinearComparativeView/components/LinearComparativeView"));
-const LinearSyntenyImportForm = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ImportForm/LinearSyntenyImportForm'))));
-const LinearSyntenyView = (0, mobx_react_1.observer)(function ({ model, }) {
-    return !model.initialized ? ((0, jsx_runtime_1.jsx)(LinearSyntenyImportForm, { model: model })) : ((0, jsx_runtime_1.jsx)(LinearComparativeView_1.default, { model: model }));
-});
-exports.default = LinearSyntenyView;

package/dist/LinearSyntenyView/components/TextField2.d.ts

@@ -1,2 +0,0 @@
-import type { TextFieldProps } from '@mui/material';
-export default function TextField2({ children, ...rest }: TextFieldProps): import("react/jsx-runtime").JSX.Element;

package/dist/LinearSyntenyView/components/TextField2.js

@@ -1,8 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = TextField2;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const material_1 = require("@mui/material");
-function TextField2({ children, ...rest }) {
-    return ((0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(material_1.TextField, { ...rest, children: children }) }));
-}

package/dist/LinearSyntenyView/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function LinearSyntenyViewF(pluginManager: PluginManager): void;

package/dist/LinearSyntenyView/index.js

@@ -1,52 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = LinearSyntenyViewF;
-const react_1 = require("react");
-const ViewType_1 = __importDefault(require("@jbrowse/core/pluggableElementTypes/ViewType"));
-const model_1 = __importDefault(require("./model"));
-function LinearSyntenyViewF(pluginManager) {
-    pluginManager.addViewType(() => {
-        return new ViewType_1.default({
-            name: 'LinearSyntenyView',
-            displayName: 'Linear synteny view',
-            stateModel: (0, model_1.default)(pluginManager),
-            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/LinearSyntenyView')))),
-        });
-    });
-}