@jbrowse/plugin-linear-comparative-view 2.17.0 → 3.0.0

package/dist/LinearSyntenyView/components/ImportForm/LinearSyntenyImportForm.js

@@ -1,42 +1,19 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const mobx_react_1 = require("mobx-react");
-const util_1 = require("@jbrowse/core/util");
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const ui_1 = require("@jbrowse/core/ui");
-// icons
-const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const util_1 = require("@jbrowse/core/util");
 const ArrowForwardIos_1 = __importDefault(require("@mui/icons-material/ArrowForwardIos"));
-const TrackSelectorUtil_1 = __importDefault(require("./TrackSelectorUtil"));
-const Spacer_1 = __importDefault(require("./Spacer"));
+const Close_1 = __importDefault(require("@mui/icons-material/Close"));
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const mui_1 = require("tss-react/mui");
+const ImportSyntenyTrackSelectorArea_1 = __importDefault(require("./ImportSyntenyTrackSelectorArea"));
+const doSubmit_1 = require("./doSubmit");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     importFormContainer: {
         padding: theme.spacing(4),
@@ -53,6 +30,7 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
     },
     flex: {
         display: 'flex',
+        gap: 90,
     },
     mb: {
         marginBottom: 10,
@@ -60,8 +38,12 @@ const useStyles = (0, mui_1.makeStyles)()(theme => ({
     bg: {
         background: theme.palette.divider,
     },
-    fixedWidth: {
-        width: 700,
+    rightPanel: {
+        flexGrow: 11,
+    },
+    leftPanel: {
+        flexGrow: 4,
+        flexShrink: 0,
     },
 }));
 const LinearSyntenyViewImportForm = (0, mobx_react_1.observer)(function ({ model, }) {
@@ -75,121 +57,38 @@ const LinearSyntenyViewImportForm = (0, mobx_react_1.observer)(function ({ model
         defaultAssemblyName,
     ]);
     const [error, setError] = (0, react_1.useState)();
-    const [userOpenedSyntenyTracksToShow, setUserOpenedSyntenyTracksToShow] = (0, react_1.useState)([]);
-    const [preConfiguredSyntenyTracksToShow, setPreConfiguredSyntenyTracksToShow,] = (0, react_1.useState)([]);
-    return (react_1.default.createElement(material_1.Container, { className: classes.importFormContainer },
-        error ? react_1.default.createElement(ui_1.ErrorMessage, { error: error }) : null,
-        react_1.default.createElement("div", { className: classes.flex },
-            react_1.default.createElement(Spacer_1.default, null),
-            react_1.default.createElement("div", null,
-                react_1.default.createElement("div", { className: classes.mb }, "Select assemblies for linear synteny view"),
-                selectedAssemblyNames.map((assemblyName, idx) => (react_1.default.createElement("div", { key: `${assemblyName}-${idx}`, className: classes.rel },
-                    react_1.default.createElement("span", null,
-                        "Row ",
-                        idx + 1,
-                        ": "),
-                    react_1.default.createElement(material_1.IconButton, { disabled: selectedAssemblyNames.length <= 2, onClick: () => {
-                            setSelectedAssemblyNames(selectedAssemblyNames
-                                .map((asm, idx2) => (idx2 === idx ? undefined : asm))
-                                .filter(util_1.notEmpty));
-                            setPreConfiguredSyntenyTracksToShow(preConfiguredSyntenyTracksToShow
-                                .map((asm, idx2) => (idx2 === idx ? undefined : asm))
-                                .filter(util_1.notEmpty));
-                            setUserOpenedSyntenyTracksToShow(userOpenedSyntenyTracksToShow
-                                .map((asm, idx2) => (idx2 === idx ? undefined : asm))
-                                .filter(util_1.notEmpty));
-                            if (selectedRow >= selectedAssemblyNames.length - 2) {
-                                setSelectedRow(0);
-                            }
-                        } },
-                        react_1.default.createElement(Close_1.default, null)),
-                    react_1.default.createElement(ui_1.AssemblySelector, { helperText: "", selected: assemblyName, onChange: newAssembly => {
-                            setSelectedAssemblyNames(selectedAssemblyNames.map((asm, idx2) => idx2 === idx ? newAssembly : asm));
-                        }, session: session }),
-                    idx !== selectedAssemblyNames.length - 1 ? (react_1.default.createElement(material_1.IconButton, { className: cx(classes.synbutton, idx === selectedRow ? classes.bg : undefined), onClick: () => {
-                            setSelectedRow(idx);
-                        } },
-                        react_1.default.createElement(ArrowForwardIos_1.default, null))) : null))),
-                react_1.default.createElement("div", null,
-                    react_1.default.createElement(material_1.Button, { className: classes.button, variant: "contained", color: "secondary", onClick: () => {
-                            setSelectedAssemblyNames([
-                                ...selectedAssemblyNames,
-                                defaultAssemblyName,
-                            ]);
-                        } }, "Add row"),
-                    react_1.default.createElement(material_1.Button, { className: classes.button, onClick: () => {
-                            // eslint-disable-next-line @typescript-eslint/no-floating-promises
-                            ;
-                            (async () => {
-                                try {
-                                    setError(undefined);
-                                    await doSubmit({
-                                        userOpenedSyntenyTracksToShow,
-                                        preConfiguredSyntenyTracksToShow,
-                                        selectedAssemblyNames,
-                                        model,
-                                    });
-                                }
-                                catch (e) {
-                                    console.error(e);
-                                    setError(e);
-                                }
-                            })();
-                        }, variant: "contained", color: "primary" }, "Launch"))),
-            react_1.default.createElement(Spacer_1.default, null),
-            react_1.default.createElement("div", { className: classes.fixedWidth },
-                react_1.default.createElement("div", null,
-                    "Synteny dataset to display between row ",
-                    selectedRow + 1,
-                    " and",
-                    ' ',
-                    selectedRow + 2),
-                react_1.default.createElement(TrackSelectorUtil_1.default, { model: model, preConfiguredSyntenyTrack: preConfiguredSyntenyTracksToShow[selectedRow], assembly1: selectedAssemblyNames[selectedRow], assembly2: selectedAssemblyNames[selectedRow + 1], setPreConfiguredSyntenyTrack: arg => {
-                        const clone = [...preConfiguredSyntenyTracksToShow];
-                        clone[selectedRow] = arg;
-                        setPreConfiguredSyntenyTracksToShow(clone);
-                    }, setUserOpenedSyntenyTrack: arg => {
-                        const clone = [...userOpenedSyntenyTracksToShow];
-                        clone[selectedRow] = arg;
-                        setUserOpenedSyntenyTracksToShow(clone);
-                    } }))),
-        react_1.default.createElement(Spacer_1.default, null)));
+    return ((0, jsx_runtime_1.jsxs)(material_1.Container, { className: classes.importFormContainer, children: [error ? (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error }) : null, (0, jsx_runtime_1.jsxs)("div", { className: classes.flex, children: [(0, jsx_runtime_1.jsxs)("div", { className: classes.leftPanel, children: [(0, jsx_runtime_1.jsx)("div", { className: classes.mb, children: "Select assemblies for linear synteny view" }), selectedAssemblyNames.map((assemblyName, idx) => ((0, jsx_runtime_1.jsxs)("div", { className: classes.rel, children: [(0, jsx_runtime_1.jsxs)("span", { children: ["Row ", idx + 1, ": "] }), (0, jsx_runtime_1.jsx)(material_1.IconButton, { disabled: selectedAssemblyNames.length <= 2, onClick: () => {
+                                            model.importFormRemoveRow(idx);
+                                            setSelectedAssemblyNames(selectedAssemblyNames
+                                                .map((asm, idx2) => (idx2 === idx ? undefined : asm))
+                                                .filter(util_1.notEmpty));
+                                            if (selectedRow >= selectedAssemblyNames.length - 2) {
+                                                setSelectedRow(0);
+                                            }
+                                        }, children: (0, jsx_runtime_1.jsx)(Close_1.default, {}) }), (0, jsx_runtime_1.jsx)(ui_1.AssemblySelector, { helperText: "", selected: assemblyName, onChange: newAssembly => {
+                                            setSelectedAssemblyNames(selectedAssemblyNames.map((asm, idx2) => idx2 === idx ? newAssembly : asm));
+                                        }, session: session }), idx !== selectedAssemblyNames.length - 1 ? ((0, jsx_runtime_1.jsx)(material_1.IconButton, { "data-testid": "synbutton", className: cx(classes.synbutton, idx === selectedRow ? classes.bg : undefined), onClick: () => {
+                                            setSelectedRow(idx);
+                                        }, children: (0, jsx_runtime_1.jsx)(ArrowForwardIos_1.default, {}) })) : null] }, `${assemblyName}-${idx}`))), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { className: classes.button, variant: "contained", color: "secondary", onClick: () => {
+                                            setSelectedAssemblyNames([
+                                                ...selectedAssemblyNames,
+                                                defaultAssemblyName,
+                                            ]);
+                                        }, children: "Add row" }), (0, jsx_runtime_1.jsx)(material_1.Button, { className: classes.button, onClick: () => {
+                                            ;
+                                            (async () => {
+                                                try {
+                                                    setError(undefined);
+                                                    await (0, doSubmit_1.doSubmit)({
+                                                        selectedAssemblyNames,
+                                                        model,
+                                                    });
+                                                }
+                                                catch (e) {
+                                                    console.error(e);
+                                                    setError(e);
+                                                }
+                                            })();
+                                        }, variant: "contained", color: "primary", children: "Launch" })] })] }), (0, jsx_runtime_1.jsxs)("div", { className: classes.rightPanel, children: [(0, jsx_runtime_1.jsxs)("div", { children: ["Synteny dataset to display between row ", selectedRow + 1, " and", ' ', selectedRow + 2] }), (0, jsx_runtime_1.jsx)(ImportSyntenyTrackSelectorArea_1.default, { model: model, selectedRow: selectedRow, assembly1: selectedAssemblyNames[selectedRow], assembly2: selectedAssemblyNames[selectedRow + 1] })] })] })] }));
 });
-async function doSubmit({ selectedAssemblyNames, model, preConfiguredSyntenyTracksToShow, userOpenedSyntenyTracksToShow, }) {
-    const session = (0, util_1.getSession)(model);
-    const { assemblyManager } = session;
-    model.setViews(await Promise.all(selectedAssemblyNames.map(async (assemblyName) => {
-        const asm = await assemblyManager.waitForAssembly(assemblyName);
-        if (!asm) {
-            throw new Error(`Assembly "${assemblyName}" failed to load`);
-        }
-        return {
-            type: 'LinearGenomeView',
-            bpPerPx: 1,
-            offsetPx: 0,
-            hideHeader: true,
-            displayedRegions: asm.regions,
-        };
-    })));
-    for (const view of model.views) {
-        view.setWidth(model.width);
-        view.showAllRegions();
-    }
-    if (!(0, util_1.isSessionWithAddTracks)(session)) {
-        session.notify("Can't add tracks", 'warning');
-    }
-    else {
-        userOpenedSyntenyTracksToShow.map((f, idx) => {
-            if (f) {
-                session.addTrackConf(f);
-                model.toggleTrack(f.trackId, idx);
-            }
-        });
-    }
-    preConfiguredSyntenyTracksToShow.map((f, idx) => {
-        if (f) {
-            model.showTrack(f, idx);
-        }
-    });
-}
 exports.default = LinearSyntenyViewImportForm;

package/dist/LinearSyntenyView/components/ImportForm/doSubmit.d.ts

@@ -0,0 +1,5 @@
+import type { LinearSyntenyViewModel } from '../../model';
+export declare function doSubmit({ selectedAssemblyNames, model, }: {
+    selectedAssemblyNames: string[];
+    model: LinearSyntenyViewModel;
+}): Promise<void>;

package/dist/LinearSyntenyView/components/ImportForm/doSubmit.js

@@ -0,0 +1,43 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.doSubmit = doSubmit;
+const util_1 = require("@jbrowse/core/util");
+const mobx_1 = require("mobx");
+async function doSubmit({ selectedAssemblyNames, model, }) {
+    const session = (0, util_1.getSession)(model);
+    const { assemblyManager } = session;
+    const { importFormSyntenyTrackSelections } = model;
+    model.setViews(await Promise.all(selectedAssemblyNames.map(async (assemblyName) => {
+        const asm = await assemblyManager.waitForAssembly(assemblyName);
+        if (!asm) {
+            throw new Error(`Assembly "${assemblyName}" failed to load`);
+        }
+        return {
+            type: 'LinearGenomeView',
+            bpPerPx: 1,
+            offsetPx: 0,
+            hideHeader: true,
+            displayedRegions: asm.regions,
+        };
+    })));
+    for (const view of model.views) {
+        view.setWidth(model.width);
+        view.showAllRegions();
+    }
+    if (!(0, util_1.isSessionWithAddTracks)(session)) {
+        session.notify("Can't add tracks", 'warning');
+    }
+    else {
+        (0, mobx_1.toJS)(importFormSyntenyTrackSelections).map((f, idx) => {
+            var _a;
+            if (f.type === 'userOpened') {
+                session.addTrackConf(f.value);
+                model.toggleTrack((_a = f.value) === null || _a === void 0 ? void 0 : _a.trackId, idx);
+            }
+            else if (f.type === 'preConfigured') {
+                model.showTrack(f.value, idx);
+            }
+        });
+    }
+    model.clearImportFormSyntenyTracks();
+}

package/dist/LinearSyntenyView/components/ImportForm/getAdapter.d.ts

@@ -0,0 +1,117 @@
+import type { FileLocation } from '@jbrowse/core/util';
+export declare function getAdapter({ radioOption, assembly1, assembly2, fileLocation, indexFileLocation, bed1Location, bed2Location, }: {
+    radioOption: string;
+    assembly1: string;
+    assembly2: string;
+    fileLocation?: FileLocation;
+    indexFileLocation?: FileLocation;
+    bed1Location?: FileLocation;
+    bed2Location?: FileLocation;
+}): {
+    type: string;
+    pafLocation: FileLocation | undefined;
+    queryAssembly: string;
+    targetAssembly: string;
+    outLocation?: undefined;
+    deltaLocation?: undefined;
+    chainLocation?: undefined;
+    mcscanAnchorsLocation?: undefined;
+    bed1Location?: undefined;
+    bed2Location?: undefined;
+    assemblyNames?: undefined;
+    mcscanSimpleAnchorsLocation?: undefined;
+    pifGzLocation?: undefined;
+    index?: undefined;
+} | {
+    type: string;
+    outLocation: FileLocation | undefined;
+    queryAssembly: string;
+    targetAssembly: string;
+    pafLocation?: undefined;
+    deltaLocation?: undefined;
+    chainLocation?: undefined;
+    mcscanAnchorsLocation?: undefined;
+    bed1Location?: undefined;
+    bed2Location?: undefined;
+    assemblyNames?: undefined;
+    mcscanSimpleAnchorsLocation?: undefined;
+    pifGzLocation?: undefined;
+    index?: undefined;
+} | {
+    type: string;
+    deltaLocation: FileLocation | undefined;
+    queryAssembly: string;
+    targetAssembly: string;
+    pafLocation?: undefined;
+    outLocation?: undefined;
+    chainLocation?: undefined;
+    mcscanAnchorsLocation?: undefined;
+    bed1Location?: undefined;
+    bed2Location?: undefined;
+    assemblyNames?: undefined;
+    mcscanSimpleAnchorsLocation?: undefined;
+    pifGzLocation?: undefined;
+    index?: undefined;
+} | {
+    type: string;
+    chainLocation: FileLocation | undefined;
+    queryAssembly: string;
+    targetAssembly: string;
+    pafLocation?: undefined;
+    outLocation?: undefined;
+    deltaLocation?: undefined;
+    mcscanAnchorsLocation?: undefined;
+    bed1Location?: undefined;
+    bed2Location?: undefined;
+    assemblyNames?: undefined;
+    mcscanSimpleAnchorsLocation?: undefined;
+    pifGzLocation?: undefined;
+    index?: undefined;
+} | {
+    type: string;
+    mcscanAnchorsLocation: FileLocation | undefined;
+    bed1Location: FileLocation | undefined;
+    bed2Location: FileLocation | undefined;
+    assemblyNames: string[];
+    pafLocation?: undefined;
+    queryAssembly?: undefined;
+    targetAssembly?: undefined;
+    outLocation?: undefined;
+    deltaLocation?: undefined;
+    chainLocation?: undefined;
+    mcscanSimpleAnchorsLocation?: undefined;
+    pifGzLocation?: undefined;
+    index?: undefined;
+} | {
+    type: string;
+    mcscanSimpleAnchorsLocation: FileLocation | undefined;
+    bed1Location: FileLocation | undefined;
+    bed2Location: FileLocation | undefined;
+    assemblyNames: string[];
+    pafLocation?: undefined;
+    queryAssembly?: undefined;
+    targetAssembly?: undefined;
+    outLocation?: undefined;
+    deltaLocation?: undefined;
+    chainLocation?: undefined;
+    mcscanAnchorsLocation?: undefined;
+    pifGzLocation?: undefined;
+    index?: undefined;
+} | {
+    type: string;
+    pifGzLocation: FileLocation | undefined;
+    index: {
+        location: FileLocation | undefined;
+    };
+    assemblyNames: string[];
+    pafLocation?: undefined;
+    queryAssembly?: undefined;
+    targetAssembly?: undefined;
+    outLocation?: undefined;
+    deltaLocation?: undefined;
+    chainLocation?: undefined;
+    mcscanAnchorsLocation?: undefined;
+    bed1Location?: undefined;
+    bed2Location?: undefined;
+    mcscanSimpleAnchorsLocation?: undefined;
+};

package/dist/LinearSyntenyView/components/ImportForm/getAdapter.js

@@ -0,0 +1,68 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.getAdapter = getAdapter;
+function getAdapter({ radioOption, assembly1, assembly2, fileLocation, indexFileLocation, bed1Location, bed2Location, }) {
+    if (radioOption === '.paf') {
+        return {
+            type: 'PAFAdapter',
+            pafLocation: fileLocation,
+            queryAssembly: assembly1,
+            targetAssembly: assembly2,
+        };
+    }
+    else if (radioOption === '.out') {
+        return {
+            type: 'MashMapAdapter',
+            outLocation: fileLocation,
+            queryAssembly: assembly1,
+            targetAssembly: assembly2,
+        };
+    }
+    else if (radioOption === '.delta') {
+        return {
+            type: 'DeltaAdapter',
+            deltaLocation: fileLocation,
+            queryAssembly: assembly1,
+            targetAssembly: assembly2,
+        };
+    }
+    else if (radioOption === '.chain') {
+        return {
+            type: 'ChainAdapter',
+            chainLocation: fileLocation,
+            queryAssembly: assembly1,
+            targetAssembly: assembly2,
+        };
+    }
+    else if (radioOption === '.anchors') {
+        return {
+            type: 'MCScanAnchorsAdapter',
+            mcscanAnchorsLocation: fileLocation,
+            bed1Location,
+            bed2Location,
+            assemblyNames: [assembly1, assembly2],
+        };
+    }
+    else if (radioOption === '.anchors.simple') {
+        return {
+            type: 'MCScanSimpleAnchorsAdapter',
+            mcscanSimpleAnchorsLocation: fileLocation,
+            bed1Location,
+            bed2Location,
+            assemblyNames: [assembly1, assembly2],
+        };
+    }
+    else if (radioOption === '.pif.gz') {
+        return {
+            type: 'PairwiseIndexedPAFAdapter',
+            pifGzLocation: fileLocation,
+            index: {
+                location: indexFileLocation,
+            },
+            assemblyNames: [assembly1, assembly2],
+        };
+    }
+    else {
+        throw new Error(`Unknown to detect type ${radioOption} from filename (select radio button to clarify)`);
+    }
+}

package/dist/LinearSyntenyView/components/ImportForm/util.js

@@ -6,11 +6,9 @@ exports.basename = basename;
 exports.extName = extName;
 function getName(sessionTrackData) {
     return sessionTrackData
-        ? // @ts-expect-error
+        ?
             sessionTrackData.uri ||
-                // @ts-expect-error
                 sessionTrackData.localPath ||
-                // @ts-expect-error
                 sessionTrackData.name
         : undefined;
 }

package/dist/LinearSyntenyView/components/LinearSyntenyView.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { LinearSyntenyViewModel } from '../model';
+import type { LinearSyntenyViewModel } from '../model';
 type LSV = LinearSyntenyViewModel;
 declare const LinearSyntenyView: ({ model }: {
     model: LSV;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default LinearSyntenyView;

package/dist/LinearSyntenyView/components/LinearSyntenyView.js

@@ -15,23 +15,33 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const mobx_react_1 = require("mobx-react");
-// locals
 const LinearComparativeView_1 = __importDefault(require("../../LinearComparativeView/components/LinearComparativeView"));
 const LinearSyntenyImportForm = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ImportForm/LinearSyntenyImportForm'))));
 const LinearSyntenyView = (0, mobx_react_1.observer)(function ({ model }) {
-    return !model.initialized ? (react_1.default.createElement(LinearSyntenyImportForm, { model: model })) : (react_1.default.createElement(LinearComparativeView_1.default, { model: model }));
+    return !model.initialized ? ((0, jsx_runtime_1.jsx)(LinearSyntenyImportForm, { model: model })) : ((0, jsx_runtime_1.jsx)(LinearComparativeView_1.default, { model: model }));
 });
 exports.default = LinearSyntenyView;

package/dist/LinearSyntenyView/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function LinearSyntenyViewF(pluginManager: PluginManager): void;

package/dist/LinearSyntenyView/index.js

@@ -15,13 +15,23 @@ var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (
 }) : function(o, v) {
     o["default"] = v;
 });
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };