@jbrowse/plugin-linear-comparative-view 2.17.0 → 3.0.0

package/dist/LinearSyntenyView/components/ExportSvgDialog.js

@@ -1,44 +1,19 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.default = ExportSvgDialog;
-const react_1 = __importStar(require("react"));
-const material_1 = require("@mui/material");
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const ui_1 = require("@jbrowse/core/ui");
 const util_1 = require("@jbrowse/core/util");
+const material_1 = require("@mui/material");
 function LoadingMessage() {
-    return (react_1.default.createElement("div", null,
-        react_1.default.createElement(material_1.CircularProgress, { size: 20, style: { marginRight: 20 } }),
-        react_1.default.createElement(material_1.Typography, { display: "inline" }, "Creating SVG")));
+    return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(material_1.CircularProgress, { size: 20, style: { marginRight: 20 } }), (0, jsx_runtime_1.jsx)(material_1.Typography, { display: "inline", children: "Creating SVG" })] }));
 }
 function useSvgLocal(key, val) {
     return (0, util_1.useLocalStorage)(`svg-${key}`, val);
 }
 function TextField2({ children, ...rest }) {
-    return (react_1.default.createElement("div", null,
-        react_1.default.createElement(material_1.TextField, { ...rest }, children)));
+    return ((0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(material_1.TextField, { ...rest, children: children }) }));
 }
 function ExportSvgDialog({ model, handleClose, }) {
     const session = (0, util_1.getSession)(model);
@@ -49,50 +24,34 @@ function ExportSvgDialog({ model, handleClose, }) {
     const [trackLabels, setTrackLabels] = useSvgLocal('tracklabels', 'offset');
     const [themeName, setThemeName] = useSvgLocal('theme', session.themeName || 'default');
     const [error, setError] = (0, react_1.useState)();
-    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: handleClose, title: "Export SVG" },
-        react_1.default.createElement(material_1.DialogContent, null,
-            error ? (react_1.default.createElement(ui_1.ErrorMessage, { error: error })) : loading ? (react_1.default.createElement(LoadingMessage, null)) : null,
-            react_1.default.createElement(TextField2, { helperText: "filename", value: filename, onChange: event => {
-                    setFilename(event.target.value);
-                } }),
-            react_1.default.createElement(TextField2, { select: true, label: "Track label positioning", variant: "outlined", value: trackLabels, style: { width: 150 }, onChange: event => {
-                    setTrackLabels(event.target.value);
-                } },
-                react_1.default.createElement(material_1.MenuItem, { value: "offset" }, "Offset"),
-                react_1.default.createElement(material_1.MenuItem, { value: "overlay" }, "Overlay"),
-                react_1.default.createElement(material_1.MenuItem, { value: "left" }, "Left"),
-                react_1.default.createElement(material_1.MenuItem, { value: "none" }, "None")),
-            react_1.default.createElement("br", null),
-            session.allThemes ? (react_1.default.createElement(TextField2, { select: true, label: "Theme", variant: "outlined", value: themeName, onChange: event => {
-                    setThemeName(event.target.value);
-                } }, Object.entries(session.allThemes()).map(([key, val]) => (react_1.default.createElement(material_1.MenuItem, { key: key, value: key }, 
-            // @ts-expect-error
-            val.name || '(Unknown name)'))))) : null,
-            offscreenCanvas ? (react_1.default.createElement(material_1.FormControlLabel, { control: react_1.default.createElement(material_1.Checkbox, { checked: rasterizeLayers, onChange: () => {
-                        setRasterizeLayers(val => !val);
-                    } }), label: "Rasterize canvas based tracks? File may be much larger if this is turned off" })) : (react_1.default.createElement(material_1.Typography, null, "Note: rasterizing layers not yet supported in this browser, so SVG size may be large"))),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                    handleClose();
-                } }, "Cancel"),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: async () => {
-                    setLoading(true);
-                    setError(undefined);
-                    try {
-                        await model.exportSvg({
-                            rasterizeLayers,
-                            filename,
-                            themeName,
-                            trackLabels,
-                        });
-                        handleClose();
-                    }
-                    catch (e) {
-                        console.error(e);
-                        setError(e);
-                    }
-                    finally {
-                        setLoading(false);
-                    }
-                } }, "Submit"))));
+    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: handleClose, title: "Export SVG", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [error ? ((0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error })) : loading ? ((0, jsx_runtime_1.jsx)(LoadingMessage, {})) : null, (0, jsx_runtime_1.jsx)(TextField2, { helperText: "filename", value: filename, onChange: event => {
+                            setFilename(event.target.value);
+                        } }), (0, jsx_runtime_1.jsxs)(TextField2, { select: true, label: "Track label positioning", variant: "outlined", value: trackLabels, style: { width: 150 }, onChange: event => {
+                            setTrackLabels(event.target.value);
+                        }, children: [(0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: "offset", children: "Offset" }), (0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: "overlay", children: "Overlay" }), (0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: "left", children: "Left" }), (0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: "none", children: "None" })] }), (0, jsx_runtime_1.jsx)("br", {}), session.allThemes ? ((0, jsx_runtime_1.jsx)(TextField2, { select: true, label: "Theme", variant: "outlined", value: themeName, onChange: event => {
+                            setThemeName(event.target.value);
+                        }, children: Object.entries(session.allThemes()).map(([key, val]) => ((0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: key, children: val.name || '(Unknown name)' }, key))) })) : null, offscreenCanvas ? ((0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { checked: rasterizeLayers, onChange: () => {
+                                setRasterizeLayers(val => !val);
+                            } }), label: "Rasterize canvas based tracks? File may be much larger if this is turned off" })) : ((0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Note: rasterizing layers not yet supported in this browser, so SVG size may be large" }))] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
+                            handleClose();
+                        }, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", type: "submit", onClick: async () => {
+                            setLoading(true);
+                            setError(undefined);
+                            try {
+                                await model.exportSvg({
+                                    rasterizeLayers,
+                                    filename,
+                                    themeName,
+                                    trackLabels,
+                                });
+                                handleClose();
+                            }
+                            catch (e) {
+                                console.error(e);
+                                setError(e);
+                            }
+                            finally {
+                                setLoading(false);
+                            }
+                        }, children: "Submit" })] })] }));
 }

package/dist/LinearSyntenyView/components/Icons.d.ts

@@ -1,4 +1,3 @@
-import React from 'react';
-import { SvgIconProps } from '@mui/material';
-export declare function Curves(props: SvgIconProps): React.JSX.Element;
-export declare function StraightLines(props: SvgIconProps): React.JSX.Element;
+import type { SvgIconProps } from '@mui/material';
+export declare function Curves(props: SvgIconProps): import("react/jsx-runtime").JSX.Element;
+export declare function StraightLines(props: SvgIconProps): import("react/jsx-runtime").JSX.Element;

package/dist/LinearSyntenyView/components/Icons.js

@@ -1,17 +1,12 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.Curves = Curves;
 exports.StraightLines = StraightLines;
-const react_1 = __importDefault(require("react"));
+const jsx_runtime_1 = require("react/jsx-runtime");
 const material_1 = require("@mui/material");
 function Curves(props) {
-    return (react_1.default.createElement(material_1.SvgIcon, { ...props },
-        react_1.default.createElement("path", { fill: "currentColor", d: "M16.5,21C13.5,21 12.31,16.76 11.05,12.28C10.14,9.04 9,5 7.5,5C4.11,5 4,11.93 4,12H2C2,11.63 2.06,3 7.5,3C10.5,3 11.71,7.25 12.97,11.74C13.83,14.8 15,19 16.5,19C19.94,19 20.03,12.07 20.03,12H22.03C22.03,12.37 21.97,21 16.5,21Z" })));
+    return ((0, jsx_runtime_1.jsx)(material_1.SvgIcon, { ...props, children: (0, jsx_runtime_1.jsx)("path", { fill: "currentColor", d: "M16.5,21C13.5,21 12.31,16.76 11.05,12.28C10.14,9.04 9,5 7.5,5C4.11,5 4,11.93 4,12H2C2,11.63 2.06,3 7.5,3C10.5,3 11.71,7.25 12.97,11.74C13.83,14.8 15,19 16.5,19C19.94,19 20.03,12.07 20.03,12H22.03C22.03,12.37 21.97,21 16.5,21Z" }) }));
 }
 function StraightLines(props) {
-    return (react_1.default.createElement(material_1.SvgIcon, { ...props },
-        react_1.default.createElement("path", { fill: "currentColor", d: "M22 12L17 22L7.1 6.04L4.24 12H2L7 2L16.9 17.96L19.76 12H22Z" })));
+    return ((0, jsx_runtime_1.jsx)(material_1.SvgIcon, { ...props, children: (0, jsx_runtime_1.jsx)("path", { fill: "currentColor", d: "M22 12L17 22L7.1 6.04L4.24 12H2L7 2L16.9 17.96L19.76 12H22Z" }) }));
 }

package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyOpenCustomTrack.d.ts

@@ -0,0 +1,8 @@
+import type { LinearSyntenyViewModel } from '../../model';
+declare const ImportSyntenyOpenCustomTrack: ({ model, assembly1, assembly2, selectedRow, }: {
+    model: LinearSyntenyViewModel;
+    assembly1: string;
+    assembly2: string;
+    selectedRow: number;
+}) => import("react/jsx-runtime").JSX.Element;
+export default ImportSyntenyOpenCustomTrack;

package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyOpenCustomTrack.js

@@ -0,0 +1,130 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
+const ui_1 = require("@jbrowse/core/ui");
+const Help_1 = __importDefault(require("@mui/icons-material/Help"));
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const getAdapter_1 = require("./getAdapter");
+const util_1 = require("./util");
+const ImportSyntenyOpenCustomTrack = (0, mobx_react_1.observer)(function ({ model, assembly1, assembly2, selectedRow, }) {
+    const [swap, setSwap] = (0, react_1.useState)(false);
+    const [bed2Location, setBed2Location] = (0, react_1.useState)();
+    const [bed1Location, setBed1Location] = (0, react_1.useState)();
+    const [fileLocation, setFileLocation] = (0, react_1.useState)();
+    const [indexFileLocation, setIndexFileLocation] = (0, react_1.useState)();
+    const [value, setValue] = (0, react_1.useState)('');
+    const [error, setError] = (0, react_1.useState)();
+    const fileName = (0, util_1.getName)(fileLocation);
+    const radioOption = value || (fileName ? (0, util_1.extName)((0, util_1.stripGz)(fileName)) : '');
+    (0, react_1.useEffect)(() => {
+        try {
+            if (fileLocation) {
+                const fn = fileName ? (0, util_1.basename)(fileName) : 'MyTrack';
+                const trackId = `${fn}-${Date.now()}-sessionTrack`;
+                setError(undefined);
+                model.setImportFormSyntenyTrack(selectedRow, {
+                    type: 'userOpened',
+                    value: {
+                        trackId,
+                        name: fn,
+                        assemblyNames: [assembly2, assembly1],
+                        type: 'SyntenyTrack',
+                        adapter: (0, getAdapter_1.getAdapter)({
+                            radioOption,
+                            assembly1: swap ? assembly2 : assembly1,
+                            assembly2: swap ? assembly1 : assembly2,
+                            fileLocation,
+                            indexFileLocation,
+                            bed1Location,
+                            bed2Location,
+                        }),
+                    },
+                });
+            }
+        }
+        catch (e) {
+            console.error(e);
+            setError(e);
+        }
+    }, [
+        swap,
+        model,
+        selectedRow,
+        fileName,
+        assembly1,
+        assembly2,
+        bed1Location,
+        bed2Location,
+        fileLocation,
+        indexFileLocation,
+        radioOption,
+    ]);
+    const helpStrings = {
+        '.paf': 'minimap2 target.fa query.fa',
+        '.pif.gz': 'minimap2 target.fa query.fa',
+        '.out': 'mashmap target.fa query.fa',
+        '.delta': 'mummer target.fa query.fa',
+        '.chain': 'e.g. queryToTarget.chain',
+    };
+    return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { style: { padding: 12 }, children: [error ? (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error }) : null, (0, jsx_runtime_1.jsx)(material_1.Typography, { style: { textAlign: 'center' }, children: "Add a .paf (minimap2), .delta (Mummer), .chain (UCSC liftover), .anchors or .anchors.simple (MCScan), or .pif.gz (jbrowse CLI make-pif) file to view. These file types can also be gzipped." }), (0, jsx_runtime_1.jsx)(material_1.RadioGroup, { value: radioOption, onChange: event => {
+                    setValue(event.target.value);
+                }, children: (0, jsx_runtime_1.jsx)(material_1.Grid2, { container: true, justifyContent: "center", children: [
+                        '.paf',
+                        '.delta',
+                        '.out',
+                        '.chain',
+                        '.anchors',
+                        '.anchors.simple',
+                        '.pif.gz',
+                    ].map(extension => ((0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { value: extension, control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: extension }, extension))) }) }), (0, jsx_runtime_1.jsx)(material_1.Grid2, { container: true, justifyContent: "center", children: radioOption === '.paf' ||
+                    radioOption === '.out' ||
+                    radioOption === '.delta' ||
+                    radioOption === '.chain' ||
+                    radioOption === '.pif.gz' ? ((0, jsx_runtime_1.jsxs)("div", { style: {
+                        display: 'flex',
+                        flexDirection: 'column',
+                        gap: 10,
+                    }, children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${radioOption} location`, inline: true, description: "", location: fileLocation, setLocation: loc => {
+                                setFileLocation(loc);
+                            } }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { children: ["Verify or click swap", (0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: (0, jsx_runtime_1.jsx)("code", { children: helpStrings[radioOption] }), children: (0, jsx_runtime_1.jsx)(Help_1.default, {}) })] }), (0, jsx_runtime_1.jsxs)("div", { style: {
+                                        display: 'flex',
+                                        gap: 20,
+                                    }, children: [(0, jsx_runtime_1.jsxs)("div", { style: {
+                                                display: 'grid',
+                                                gridTemplateColumns: '1fr 1fr',
+                                                gap: 4,
+                                                alignItems: 'center',
+                                            }, children: [(0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly2 : assembly1 }) }), (0, jsx_runtime_1.jsx)("div", { children: "query assembly" }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly1 : assembly2 }) }), (0, jsx_runtime_1.jsx)("div", { children: "target assembly" })] }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", onClick: () => {
+                                                setSwap(!swap);
+                                            }, children: "Swap?" })] })] })] })) : value === '.anchors' || value === '.anchors.simple' ? ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsxs)("div", { style: { margin: 20 }, children: ["Open the ", value, " and .bed files for both genome assemblies from the MCScan (Python version) pipeline", ' ', (0, jsx_runtime_1.jsx)("a", { href: "https://github.com/tanghaibao/jcvi/wiki/MCscan-(Python-version)", children: "(more info)" })] }), (0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: value, location: fileLocation, setLocation: loc => {
+                                        setFileLocation(loc);
+                                    } }), (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: "genome 1 .bed (left column of anchors file)", description: "", location: bed1Location, setLocation: loc => {
+                                        setBed1Location(loc);
+                                    } }), (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { inline: true, name: "genome 2 .bed (right column of anchors file)", description: "", location: bed2Location, setLocation: loc => {
+                                        setBed2Location(loc);
+                                    } })] }), (0, jsx_runtime_1.jsxs)("div", { style: {
+                                margin: 'auto',
+                                display: 'flex',
+                                justifyContent: 'center',
+                                gap: 20,
+                            }, children: [(0, jsx_runtime_1.jsxs)("div", { style: {
+                                        display: 'grid',
+                                        gridTemplateColumns: '1fr 1fr',
+                                        gap: 4,
+                                        alignItems: 'center',
+                                    }, children: [(0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly2 : assembly1 }) }), (0, jsx_runtime_1.jsx)("div", { children: "bed1 assembly" }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)("i", { children: swap ? assembly1 : assembly2 }) }), (0, jsx_runtime_1.jsx)("div", { children: "bed2 assembly" })] }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", onClick: () => {
+                                        setSwap(!swap);
+                                    }, children: "Swap?" })] })] })) : value === '.pif.gz' ? ((0, jsx_runtime_1.jsxs)("div", { style: { display: 'flex' }, children: [(0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${value} location`, description: "", location: fileLocation, setLocation: loc => {
+                                    setFileLocation(loc);
+                                } }) }), (0, jsx_runtime_1.jsx)("div", { children: (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: `${value} index location`, description: "", location: indexFileLocation, setLocation: loc => {
+                                    setIndexFileLocation(loc);
+                                } }) })] })) : ((0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: value ? `${value} location` : '', description: "", location: fileLocation, setLocation: loc => {
+                        setFileLocation(loc);
+                    } })) })] }));
+});
+exports.default = ImportSyntenyOpenCustomTrack;

package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyPreConfigured.d.ts

@@ -0,0 +1,8 @@
+import type { LinearSyntenyViewModel } from '../../model';
+declare const ImportSyntenyTrackSelector: ({ model, selectedRow, assembly1, assembly2, }: {
+    model: LinearSyntenyViewModel;
+    selectedRow: number;
+    assembly1: string;
+    assembly2: string;
+}) => import("react/jsx-runtime").JSX.Element;
+export default ImportSyntenyTrackSelector;

package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyPreConfigured.js

@@ -0,0 +1,39 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
+const configuration_1 = require("@jbrowse/core/configuration");
+const ui_1 = require("@jbrowse/core/ui");
+const util_1 = require("@jbrowse/core/util");
+const tracks_1 = require("@jbrowse/core/util/tracks");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const ImportSyntenyTrackSelector = (0, mobx_react_1.observer)(function ({ model, selectedRow, assembly1, assembly2, }) {
+    var _a;
+    const session = (0, util_1.getSession)(model);
+    const { importFormSyntenyTrackSelections } = model;
+    const { tracks = [], sessionTracks = [] } = session;
+    const allTracks = [...tracks, ...sessionTracks];
+    const filteredTracks = allTracks.filter(track => {
+        const assemblyNames = (0, configuration_1.readConfObject)(track, 'assemblyNames');
+        return (assemblyNames.includes(assembly1) &&
+            assemblyNames.includes(assembly2) &&
+            track.type.includes('Synteny'));
+    });
+    const resetTrack = ((_a = filteredTracks[0]) === null || _a === void 0 ? void 0 : _a.trackId) || '';
+    const r = importFormSyntenyTrackSelections[selectedRow];
+    const value = (r === null || r === void 0 ? void 0 : r.type) === 'preConfigured' ? r.value : undefined;
+    (0, react_1.useEffect)(() => {
+        model.setImportFormSyntenyTrack(selectedRow, {
+            type: 'preConfigured',
+            value: resetTrack,
+        });
+    }, [assembly2, assembly1, resetTrack, selectedRow, model]);
+    return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { style: { padding: 12 }, children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Select a track from the select box below, the track will be shown when you hit \"Launch\"." }), value && filteredTracks.map(r => r.trackId).includes(value) ? ((0, jsx_runtime_1.jsx)(material_1.Select, { value: value, onChange: event => {
+                    model.setImportFormSyntenyTrack(selectedRow, {
+                        type: 'preConfigured',
+                        value: event.target.value,
+                    });
+                }, children: filteredTracks.map(track => ((0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: track.trackId, children: (0, tracks_1.getTrackName)(track, session) }, track.trackId))) })) : ((0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: `No synteny tracks found for ${assembly1},${assembly2}` }))] }));
+});
+exports.default = ImportSyntenyTrackSelector;

package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyTrackSelectorArea.d.ts

@@ -0,0 +1,7 @@
+import type { LinearSyntenyViewModel } from '../../model';
+export default function ImportSyntenyTrackSelectorArea({ model, assembly1, assembly2, selectedRow, }: {
+    model: LinearSyntenyViewModel;
+    assembly1: string;
+    assembly2: string;
+    selectedRow: number;
+}): import("react/jsx-runtime").JSX.Element;

package/dist/LinearSyntenyView/components/ImportForm/ImportSyntenyTrackSelectorArea.js

@@ -0,0 +1,22 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.default = ImportSyntenyTrackSelectorArea;
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
+const material_1 = require("@mui/material");
+const ImportSyntenyOpenCustomTrack_1 = __importDefault(require("./ImportSyntenyOpenCustomTrack"));
+const ImportSyntenyPreConfigured_1 = __importDefault(require("./ImportSyntenyPreConfigured"));
+function ImportSyntenyTrackSelectorArea({ model, assembly1, assembly2, selectedRow, }) {
+    const [choice, setChoice] = (0, react_1.useState)('tracklist');
+    (0, react_1.useEffect)(() => {
+        if (choice === 'none') {
+            model.setImportFormSyntenyTrack(selectedRow, { type: 'none' });
+        }
+    }, [choice, model, selectedRow]);
+    return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(material_1.FormControl, { children: (0, jsx_runtime_1.jsxs)(material_1.RadioGroup, { row: true, value: choice, "aria-labelledby": "group-label", onChange: event => {
+                        setChoice(event.target.value);
+                    }, children: [(0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { value: "none", control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: "None" }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { value: "tracklist", control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: "Existing track" }), (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { value: "custom", control: (0, jsx_runtime_1.jsx)(material_1.Radio, {}), label: "New track" })] }) }), choice === 'custom' ? ((0, jsx_runtime_1.jsx)(ImportSyntenyOpenCustomTrack_1.default, { model: model, selectedRow: selectedRow, assembly2: assembly2, assembly1: assembly1 })) : null, choice === 'tracklist' ? ((0, jsx_runtime_1.jsx)(ImportSyntenyPreConfigured_1.default, { model: model, selectedRow: selectedRow, assembly1: assembly1, assembly2: assembly2 })) : null] }));
+}

package/dist/LinearSyntenyView/components/ImportForm/LinearSyntenyImportForm.d.ts

@@ -1,6 +1,5 @@
-import React from 'react';
-import { LinearSyntenyViewModel } from '../../model';
+import type { LinearSyntenyViewModel } from '../../model';
 declare const LinearSyntenyViewImportForm: ({ model, }: {
     model: LinearSyntenyViewModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default LinearSyntenyViewImportForm;