@jbrowse/plugin-legacy-jbrowse 1.7.11 → 2.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/JBrowse1Connection/configSchema.js +18 -28
- package/dist/JBrowse1Connection/configSchema.js.map +1 -0
- package/dist/JBrowse1Connection/index.js +10 -22
- package/dist/JBrowse1Connection/index.js.map +1 -0
- package/dist/JBrowse1Connection/jb1ConfigLoad.js +387 -501
- package/dist/JBrowse1Connection/jb1ConfigLoad.js.map +1 -0
- package/dist/JBrowse1Connection/jb1ConfigParse.js +414 -435
- package/dist/JBrowse1Connection/jb1ConfigParse.js.map +1 -0
- package/dist/JBrowse1Connection/jb1ToJb2.js +405 -546
- package/dist/JBrowse1Connection/jb1ToJb2.js.map +1 -0
- package/dist/JBrowse1Connection/model.js +49 -57
- package/dist/JBrowse1Connection/model.js.map +1 -0
- package/dist/JBrowse1Connection/types.js +2 -4
- package/dist/JBrowse1Connection/types.js.map +1 -0
- package/dist/JBrowse1Connection/util.js +123 -130
- package/dist/JBrowse1Connection/util.js.map +1 -0
- package/dist/JBrowse1TextSeachAdapter/HttpMap.js +181 -326
- package/dist/JBrowse1TextSeachAdapter/HttpMap.js.map +1 -0
- package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js +164 -185
- package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js.map +1 -0
- package/dist/JBrowse1TextSeachAdapter/configSchema.js +20 -33
- package/dist/JBrowse1TextSeachAdapter/configSchema.js.map +1 -0
- package/dist/JBrowse1TextSeachAdapter/index.js +10 -22
- package/dist/JBrowse1TextSeachAdapter/index.js.map +1 -0
- package/dist/NCListAdapter/NCListAdapter.js +164 -224
- package/dist/NCListAdapter/NCListAdapter.js.map +1 -0
- package/dist/NCListAdapter/NCListFeature.js +68 -125
- package/dist/NCListAdapter/NCListFeature.js.map +1 -0
- package/dist/NCListAdapter/configSchema.js +17 -26
- package/dist/NCListAdapter/configSchema.js.map +1 -0
- package/dist/NCListAdapter/index.js +8 -14
- package/dist/NCListAdapter/index.js.map +1 -0
- package/dist/index.js +97 -116
- package/dist/index.js.map +1 -0
- package/esm/JBrowse1Connection/configSchema.d.ts +2 -0
- package/esm/JBrowse1Connection/configSchema.js +18 -0
- package/esm/JBrowse1Connection/configSchema.js.map +1 -0
- package/esm/JBrowse1Connection/index.d.ts +2 -0
- package/esm/JBrowse1Connection/index.js +3 -0
- package/esm/JBrowse1Connection/index.js.map +1 -0
- package/esm/JBrowse1Connection/jb1ConfigLoad.d.ts +36 -0
- package/esm/JBrowse1Connection/jb1ConfigLoad.js +281 -0
- package/esm/JBrowse1Connection/jb1ConfigLoad.js.map +1 -0
- package/esm/JBrowse1Connection/jb1ConfigParse.d.ts +11 -0
- package/esm/JBrowse1Connection/jb1ConfigParse.js +377 -0
- package/esm/JBrowse1Connection/jb1ConfigParse.js.map +1 -0
- package/esm/JBrowse1Connection/jb1ToJb2.d.ts +49 -0
- package/esm/JBrowse1Connection/jb1ToJb2.js +424 -0
- package/esm/JBrowse1Connection/jb1ToJb2.js.map +1 -0
- package/esm/JBrowse1Connection/model.d.ts +15 -0
- package/esm/JBrowse1Connection/model.js +44 -0
- package/esm/JBrowse1Connection/model.js.map +1 -0
- package/esm/JBrowse1Connection/types.d.ts +91 -0
- package/esm/JBrowse1Connection/types.js +2 -0
- package/esm/JBrowse1Connection/types.js.map +1 -0
- package/esm/JBrowse1Connection/util.d.ts +26 -0
- package/esm/JBrowse1Connection/util.js +136 -0
- package/esm/JBrowse1Connection/util.js.map +1 -0
- package/esm/JBrowse1TextSeachAdapter/HttpMap.d.ts +39 -0
- package/esm/JBrowse1TextSeachAdapter/HttpMap.js +89 -0
- package/esm/JBrowse1TextSeachAdapter/HttpMap.js.map +1 -0
- package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.d.ts +33 -0
- package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js +67 -0
- package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js.map +1 -0
- package/esm/JBrowse1TextSeachAdapter/configSchema.d.ts +2 -0
- package/esm/JBrowse1TextSeachAdapter/configSchema.js +20 -0
- package/esm/JBrowse1TextSeachAdapter/configSchema.js.map +1 -0
- package/esm/JBrowse1TextSeachAdapter/index.d.ts +2 -0
- package/esm/JBrowse1TextSeachAdapter/index.js +3 -0
- package/esm/JBrowse1TextSeachAdapter/index.js.map +1 -0
- package/esm/NCListAdapter/NCListAdapter.d.ts +31 -0
- package/esm/NCListAdapter/NCListAdapter.js +62 -0
- package/esm/NCListAdapter/NCListAdapter.js.map +1 -0
- package/esm/NCListAdapter/NCListFeature.d.ts +31 -0
- package/esm/NCListAdapter/NCListFeature.js +78 -0
- package/esm/NCListAdapter/NCListFeature.js.map +1 -0
- package/esm/NCListAdapter/configSchema.d.ts +2 -0
- package/esm/NCListAdapter/configSchema.js +16 -0
- package/esm/NCListAdapter/configSchema.js.map +1 -0
- package/esm/NCListAdapter/index.d.ts +1 -0
- package/esm/NCListAdapter/index.js +2 -0
- package/esm/NCListAdapter/index.js.map +1 -0
- package/esm/index.d.ts +6 -0
- package/esm/index.js +50 -0
- package/esm/index.js.map +1 -0
- package/package.json +17 -8
- package/src/NCListAdapter/NCListAdapter.test.ts +24 -16
- package/dist/JBrowse1TextSeachAdapter/HttpMap.test.js +0 -118
- package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.test.js +0 -98
- package/dist/NCListAdapter/NCListAdapter.test.js +0 -108
- package/dist/declare.d.js +0 -1
- package/dist/index.test.js +0 -44
package/dist/index.test.js
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"use strict";
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var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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var _PluginManager = _interopRequireDefault(require("@jbrowse/core/PluginManager"));
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var _mobxStateTree = require("mobx-state-tree");
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var _ = _interopRequireDefault(require("."));
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test('plugin in a stock JBrowse', function () {
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var originalConsoleWarn = console.warn;
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console.warn = jest.fn();
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var pluginManager = new _PluginManager.default([new _.default()]);
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pluginManager.createPluggableElements();
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pluginManager.configure();
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console.warn = originalConsoleWarn;
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expect(function () {
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return pluginManager.addPlugin(new _.default());
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}).toThrow(/JBrowse already configured, cannot add plugins/);
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var NCListAdapter = pluginManager.getAdapterType('NCListAdapter');
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var config = NCListAdapter.configSchema.create({
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type: 'NCListAdapter'
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});
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expect((0, _mobxStateTree.getSnapshot)(config)).toMatchSnapshot();
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});
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test('test creating a text search adapter', function () {
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console.warn = jest.fn();
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var pluginManager = new _PluginManager.default([new _.default()]);
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pluginManager.createPluggableElements();
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pluginManager.configure();
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var JB1TextSearchAdapter = pluginManager.getTextSearchAdapterType('JBrowse1TextSearchAdapter');
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var config = JB1TextSearchAdapter.configSchema.create({
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type: 'JBrowse1TextSearchAdapter',
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textSearchAdapterId: 'JBrowse1GenerateNamesAdapterTest',
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namesIndexLocation: {
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uri: 'names/',
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locationType: 'UriLocation'
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},
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tracks: [],
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assemblies: []
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});
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expect((0, _mobxStateTree.getSnapshot)(config)).toMatchSnapshot();
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});
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