@jbrowse/plugin-legacy-jbrowse 1.7.11 → 2.1.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (92) hide show
  1. package/dist/JBrowse1Connection/configSchema.js +18 -28
  2. package/dist/JBrowse1Connection/configSchema.js.map +1 -0
  3. package/dist/JBrowse1Connection/index.js +10 -22
  4. package/dist/JBrowse1Connection/index.js.map +1 -0
  5. package/dist/JBrowse1Connection/jb1ConfigLoad.js +387 -501
  6. package/dist/JBrowse1Connection/jb1ConfigLoad.js.map +1 -0
  7. package/dist/JBrowse1Connection/jb1ConfigParse.js +414 -435
  8. package/dist/JBrowse1Connection/jb1ConfigParse.js.map +1 -0
  9. package/dist/JBrowse1Connection/jb1ToJb2.js +405 -546
  10. package/dist/JBrowse1Connection/jb1ToJb2.js.map +1 -0
  11. package/dist/JBrowse1Connection/model.js +49 -57
  12. package/dist/JBrowse1Connection/model.js.map +1 -0
  13. package/dist/JBrowse1Connection/types.js +2 -4
  14. package/dist/JBrowse1Connection/types.js.map +1 -0
  15. package/dist/JBrowse1Connection/util.js +123 -130
  16. package/dist/JBrowse1Connection/util.js.map +1 -0
  17. package/dist/JBrowse1TextSeachAdapter/HttpMap.js +181 -326
  18. package/dist/JBrowse1TextSeachAdapter/HttpMap.js.map +1 -0
  19. package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js +164 -185
  20. package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js.map +1 -0
  21. package/dist/JBrowse1TextSeachAdapter/configSchema.js +20 -33
  22. package/dist/JBrowse1TextSeachAdapter/configSchema.js.map +1 -0
  23. package/dist/JBrowse1TextSeachAdapter/index.js +10 -22
  24. package/dist/JBrowse1TextSeachAdapter/index.js.map +1 -0
  25. package/dist/NCListAdapter/NCListAdapter.js +164 -224
  26. package/dist/NCListAdapter/NCListAdapter.js.map +1 -0
  27. package/dist/NCListAdapter/NCListFeature.js +68 -125
  28. package/dist/NCListAdapter/NCListFeature.js.map +1 -0
  29. package/dist/NCListAdapter/configSchema.js +17 -26
  30. package/dist/NCListAdapter/configSchema.js.map +1 -0
  31. package/dist/NCListAdapter/index.js +8 -14
  32. package/dist/NCListAdapter/index.js.map +1 -0
  33. package/dist/index.js +97 -116
  34. package/dist/index.js.map +1 -0
  35. package/esm/JBrowse1Connection/configSchema.d.ts +2 -0
  36. package/esm/JBrowse1Connection/configSchema.js +18 -0
  37. package/esm/JBrowse1Connection/configSchema.js.map +1 -0
  38. package/esm/JBrowse1Connection/index.d.ts +2 -0
  39. package/esm/JBrowse1Connection/index.js +3 -0
  40. package/esm/JBrowse1Connection/index.js.map +1 -0
  41. package/esm/JBrowse1Connection/jb1ConfigLoad.d.ts +36 -0
  42. package/esm/JBrowse1Connection/jb1ConfigLoad.js +281 -0
  43. package/esm/JBrowse1Connection/jb1ConfigLoad.js.map +1 -0
  44. package/esm/JBrowse1Connection/jb1ConfigParse.d.ts +11 -0
  45. package/esm/JBrowse1Connection/jb1ConfigParse.js +377 -0
  46. package/esm/JBrowse1Connection/jb1ConfigParse.js.map +1 -0
  47. package/esm/JBrowse1Connection/jb1ToJb2.d.ts +49 -0
  48. package/esm/JBrowse1Connection/jb1ToJb2.js +424 -0
  49. package/esm/JBrowse1Connection/jb1ToJb2.js.map +1 -0
  50. package/esm/JBrowse1Connection/model.d.ts +15 -0
  51. package/esm/JBrowse1Connection/model.js +44 -0
  52. package/esm/JBrowse1Connection/model.js.map +1 -0
  53. package/esm/JBrowse1Connection/types.d.ts +91 -0
  54. package/esm/JBrowse1Connection/types.js +2 -0
  55. package/esm/JBrowse1Connection/types.js.map +1 -0
  56. package/esm/JBrowse1Connection/util.d.ts +26 -0
  57. package/esm/JBrowse1Connection/util.js +136 -0
  58. package/esm/JBrowse1Connection/util.js.map +1 -0
  59. package/esm/JBrowse1TextSeachAdapter/HttpMap.d.ts +39 -0
  60. package/esm/JBrowse1TextSeachAdapter/HttpMap.js +89 -0
  61. package/esm/JBrowse1TextSeachAdapter/HttpMap.js.map +1 -0
  62. package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.d.ts +33 -0
  63. package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js +67 -0
  64. package/esm/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.js.map +1 -0
  65. package/esm/JBrowse1TextSeachAdapter/configSchema.d.ts +2 -0
  66. package/esm/JBrowse1TextSeachAdapter/configSchema.js +20 -0
  67. package/esm/JBrowse1TextSeachAdapter/configSchema.js.map +1 -0
  68. package/esm/JBrowse1TextSeachAdapter/index.d.ts +2 -0
  69. package/esm/JBrowse1TextSeachAdapter/index.js +3 -0
  70. package/esm/JBrowse1TextSeachAdapter/index.js.map +1 -0
  71. package/esm/NCListAdapter/NCListAdapter.d.ts +31 -0
  72. package/esm/NCListAdapter/NCListAdapter.js +62 -0
  73. package/esm/NCListAdapter/NCListAdapter.js.map +1 -0
  74. package/esm/NCListAdapter/NCListFeature.d.ts +31 -0
  75. package/esm/NCListAdapter/NCListFeature.js +78 -0
  76. package/esm/NCListAdapter/NCListFeature.js.map +1 -0
  77. package/esm/NCListAdapter/configSchema.d.ts +2 -0
  78. package/esm/NCListAdapter/configSchema.js +16 -0
  79. package/esm/NCListAdapter/configSchema.js.map +1 -0
  80. package/esm/NCListAdapter/index.d.ts +1 -0
  81. package/esm/NCListAdapter/index.js +2 -0
  82. package/esm/NCListAdapter/index.js.map +1 -0
  83. package/esm/index.d.ts +6 -0
  84. package/esm/index.js +50 -0
  85. package/esm/index.js.map +1 -0
  86. package/package.json +17 -8
  87. package/src/NCListAdapter/NCListAdapter.test.ts +24 -16
  88. package/dist/JBrowse1TextSeachAdapter/HttpMap.test.js +0 -118
  89. package/dist/JBrowse1TextSeachAdapter/JBrowse1TextSearchAdapter.test.js +0 -98
  90. package/dist/NCListAdapter/NCListAdapter.test.js +0 -108
  91. package/dist/declare.d.js +0 -1
  92. package/dist/index.test.js +0 -44
@@ -1,44 +0,0 @@
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- "use strict";
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-
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- var _interopRequireDefault = require("@babel/runtime/helpers/interopRequireDefault");
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-
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- var _PluginManager = _interopRequireDefault(require("@jbrowse/core/PluginManager"));
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-
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- var _mobxStateTree = require("mobx-state-tree");
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-
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- var _ = _interopRequireDefault(require("."));
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-
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- test('plugin in a stock JBrowse', function () {
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- var originalConsoleWarn = console.warn;
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- console.warn = jest.fn();
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- var pluginManager = new _PluginManager.default([new _.default()]);
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- pluginManager.createPluggableElements();
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- pluginManager.configure();
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- console.warn = originalConsoleWarn;
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- expect(function () {
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- return pluginManager.addPlugin(new _.default());
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- }).toThrow(/JBrowse already configured, cannot add plugins/);
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- var NCListAdapter = pluginManager.getAdapterType('NCListAdapter');
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- var config = NCListAdapter.configSchema.create({
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- type: 'NCListAdapter'
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- });
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- expect((0, _mobxStateTree.getSnapshot)(config)).toMatchSnapshot();
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- });
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- test('test creating a text search adapter', function () {
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- console.warn = jest.fn();
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- var pluginManager = new _PluginManager.default([new _.default()]);
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- pluginManager.createPluggableElements();
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- pluginManager.configure();
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- var JB1TextSearchAdapter = pluginManager.getTextSearchAdapterType('JBrowse1TextSearchAdapter');
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- var config = JB1TextSearchAdapter.configSchema.create({
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- type: 'JBrowse1TextSearchAdapter',
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- textSearchAdapterId: 'JBrowse1GenerateNamesAdapterTest',
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- namesIndexLocation: {
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- uri: 'names/',
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- locationType: 'UriLocation'
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- },
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- tracks: [],
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- assemblies: []
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- });
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- expect((0, _mobxStateTree.getSnapshot)(config)).toMatchSnapshot();
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- });