@jbrowse/plugin-grid-bookmark 2.17.0 → 3.0.0

package/esm/GridBookmarkWidget/components/dialogs/ShareBookmarksDialog.js

@@ -1,13 +1,13 @@
-import React, { useEffect, useState } from 'react';
+import { jsx as _jsx, Fragment as _Fragment, jsxs as _jsxs } from "react/jsx-runtime";
+import { useEffect, useState } from 'react';
+import { Dialog, ErrorMessage } from '@jbrowse/core/ui';
+import { ContentCopy as ContentCopyIcon } from '@jbrowse/core/ui/Icons';
+import { getSession, isSessionWithShareURL } from '@jbrowse/core/util';
+import { Alert, Button, DialogActions, DialogContent, DialogContentText, TextField, Typography, } from '@mui/material';
+import copy from 'copy-to-clipboard';
 import { observer } from 'mobx-react';
 import { getSnapshot } from 'mobx-state-tree';
-import { Alert, Button, DialogActions, DialogContent, DialogContentText, TextField, Typography, } from '@mui/material';
 import { makeStyles } from 'tss-react/mui';
-import copy from 'copy-to-clipboard';
-import { getSession, isSessionWithShareURL } from '@jbrowse/core/util';
-import { Dialog, ErrorMessage } from '@jbrowse/core/ui';
-import { ContentCopy as ContentCopyIcon } from '@jbrowse/core/ui/Icons';
-// locals
 import { shareSessionToDynamo } from '../../sessionSharing';
 const useStyles = makeStyles()(() => ({
     flexItem: {
@@ -31,7 +31,6 @@ const ShareBookmarksDialog = observer(function ({ onClose, model, }) {
         ? model.allBookmarksModel
         : model.sharedBookmarksModel;
     useEffect(() => {
-        // eslint-disable-next-line @typescript-eslint/no-floating-promises
         ;
         (async () => {
             try {
@@ -57,27 +56,17 @@ const ShareBookmarksDialog = observer(function ({ onClose, model, }) {
             }
         })();
     }, [bookmarksToShare, session]);
-    return (React.createElement(Dialog, { open: true, onClose: onClose, title: "Share bookmarks" },
-        React.createElement(DialogContent, { className: classes.content },
-            React.createElement(Alert, { severity: "info" }, shareAll ? (React.createElement(React.Fragment, null,
-                React.createElement("span", null, "All bookmarks will be shared."),
-                React.createElement("br", null),
-                React.createElement("span", null, "Use the checkboxes to select individual bookmarks to share."))) : ('Only selected bookmarks will be shared.')),
-            React.createElement(DialogContentText, null, "Copy the URL below to share your bookmarks."),
-            error ? (React.createElement(ErrorMessage, { error: error })) : loading ? (React.createElement(Typography, null, "Generating short URL...")) : (React.createElement(TextField, { label: "URL", value: url, slotProps: {
-                    input: {
-                        readOnly: true,
-                    },
-                }, variant: "filled", fullWidth: true, onClick: event => {
-                    const target = event.target;
-                    target.select();
-                } })),
-            React.createElement(DialogContentText, null, "The URL should be pasted into the \"Import from share link\" field in the \"Import\" form found in the \"Bookmarked regions\" drawer.")),
-        React.createElement(DialogActions, null,
-            React.createElement(Button, { className: classes.flexItem, "data-testid": "dialogShare", variant: "contained", color: "primary", disabled: loading, startIcon: React.createElement(ContentCopyIcon, null), onClick: async () => {
-                    copy(url);
-                    session.notify('Copied to clipboard', 'success');
-                    onClose();
-                } }, "Copy share link"))));
+    return (_jsxs(Dialog, { open: true, onClose: onClose, title: "Share bookmarks", children: [_jsxs(DialogContent, { className: classes.content, children: [_jsx(Alert, { severity: "info", children: shareAll ? (_jsxs(_Fragment, { children: [_jsx("span", { children: "All bookmarks will be shared." }), _jsx("br", {}), _jsx("span", { children: "Use the checkboxes to select individual bookmarks to share." })] })) : ('Only selected bookmarks will be shared.') }), _jsx(DialogContentText, { children: "Copy the URL below to share your bookmarks." }), error ? (_jsx(ErrorMessage, { error: error })) : loading ? (_jsx(Typography, { children: "Generating short URL..." })) : (_jsx(TextField, { label: "URL", value: url, slotProps: {
+                            input: {
+                                readOnly: true,
+                            },
+                        }, variant: "filled", fullWidth: true, onClick: event => {
+                            const target = event.target;
+                            target.select();
+                        } })), _jsx(DialogContentText, { children: "The URL should be pasted into the \"Import from share link\" field in the \"Import\" form found in the \"Bookmarked regions\" drawer." })] }), _jsx(DialogActions, { children: _jsx(Button, { className: classes.flexItem, "data-testid": "dialogShare", variant: "contained", color: "primary", disabled: loading, startIcon: _jsx(ContentCopyIcon, {}), onClick: async () => {
+                        copy(url);
+                        session.notify('Copied to clipboard', 'success');
+                        onClose();
+                    }, children: "Copy share link" }) })] }));
 });
 export default ShareBookmarksDialog;

package/esm/GridBookmarkWidget/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function GridBookmarkWidgetF(pluginManager: PluginManager): void;

package/esm/GridBookmarkWidget/index.js

@@ -1,9 +1,8 @@
 import { lazy } from 'react';
 import { ConfigurationSchema } from '@jbrowse/core/configuration';
 import { WidgetType } from '@jbrowse/core/pluggableElementTypes';
-// locals
-import stateModelFactory from './model';
 import AddHighlightModelF from './components/Highlight';
+import stateModelFactory from './model';
 const configSchema = ConfigurationSchema('GridBookmarkWidget', {});
 export default function GridBookmarkWidgetF(pluginManager) {
     pluginManager.addWidgetType(() => {

package/esm/GridBookmarkWidget/model.d.ts

@@ -1,7 +1,7 @@
-import { Instance, SnapshotIn, IMSTArray } from 'mobx-state-tree';
-import PluginManager from '@jbrowse/core/PluginManager';
-import { Region } from '@jbrowse/core/util/types';
-import { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
+import type PluginManager from '@jbrowse/core/PluginManager';
+import type { Region } from '@jbrowse/core/util/types';
+import type { LinearGenomeViewModel } from '@jbrowse/plugin-linear-genome-view';
+import type { IMSTArray, Instance, SnapshotIn } from 'mobx-state-tree';
 declare const LabeledRegionModel: import("mobx-state-tree").IModelType<{
     refName: import("mobx-state-tree").ISimpleType<string>;
     start: import("mobx-state-tree").ISimpleType<number>;
@@ -19,10 +19,10 @@ declare const LabeledRegionModel: import("mobx-state-tree").IModelType<{
     setHighlight(color: string): void;
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 export interface IExtendedLGV extends LinearGenomeViewModel {
-    showBookmarkHighlights: boolean;
-    showBookmarkLabels: boolean;
-    toggleShowBookmarkHighlights: (arg: boolean) => void;
-    toggleShowBookmarkLabels: (arg: boolean) => void;
+    bookmarkHighlightsVisible: boolean;
+    bookmarkLabelsVisible: boolean;
+    setBookmarkHighlightsVisible: (arg: boolean) => void;
+    setBookmarkLabelsVisible: (arg: boolean) => void;
 }
 export interface ILabeledRegionModel extends SnapshotIn<typeof LabeledRegionModel> {
     refName: string;
@@ -40,22 +40,9 @@ export interface IExtendedLabeledRegionModel extends ILabeledRegionModel {
     id: number;
     correspondingObj: ILabeledRegionModel;
 }
-/**
- * #stateModel GridBookmarkWidgetModel
- */
 export default function f(_pluginManager: PluginManager): import("mobx-state-tree").IModelType<{
-    /**
-     * #property
-     */
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    /**
-     * #property
-     */
     type: import("mobx-state-tree").ISimpleType<"GridBookmarkWidget">;
-    /**
-     * #property
-     * removed by postProcessSnapshot, only loaded from localStorage
-     */
     bookmarks: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
         refName: import("mobx-state-tree").ISimpleType<string>;
         start: import("mobx-state-tree").ISimpleType<number>;
@@ -76,26 +63,11 @@ export default function f(_pluginManager: PluginManager): import("mobx-state-tre
     selectedBookmarks: IExtendedLabeledRegionModel[];
     selectedAssembliesPre: string[] | undefined;
 } & {
-    /**
-     * #getter
-     */
     readonly bookmarkAssemblies: string[];
-    /**
-     * #getter
-     */
     readonly validAssemblies: Set<string>;
-    /**
-     * #getter
-     */
     readonly areBookmarksHighlightedOnAllOpenViews: boolean;
-    /**
-     * #getter
-     */
     readonly areBookmarksHighlightLabelsOnAllOpenViews: boolean;
 } & {
-    /**
-     * #getter
-     */
     readonly bookmarksWithValidAssemblies: ({
         refName: string;
         start: number;
@@ -126,9 +98,6 @@ export default function f(_pluginManager: PluginManager): import("mobx-state-tre
         setHighlight(color: string): void;
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>)[];
 } & {
-    /**
-     * #getter
-     */
     readonly sharedBookmarksModel: {
         sharedBookmarks: (IMSTArray<import("mobx-state-tree").IModelType<{
             refName: import("mobx-state-tree").ISimpleType<string>;
@@ -179,9 +148,6 @@ export default function f(_pluginManager: PluginManager): import("mobx-state-tre
             setHighlight(color: string): void;
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
-    /**
-     * #getter
-     */
     readonly allBookmarksModel: {
         sharedBookmarks: (IMSTArray<import("mobx-state-tree").IModelType<{
             refName: import("mobx-state-tree").ISimpleType<string>;
@@ -233,64 +199,22 @@ export default function f(_pluginManager: PluginManager): import("mobx-state-tre
         }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
     }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
 } & {
-    /**
-     * #action
-     */
     setSelectedAssemblies(assemblies?: string[]): void;
 } & {
-    /**
-     * #getter
-     */
     readonly selectedAssemblies: string[];
 } & {
-    /**
-     * #action
-     */
     importBookmarks(regions: Region[]): void;
-    /**
-     * #action
-     */
     addBookmark(region: Region): void;
-    /**
-     * #action
-     */
     removeBookmark(index: number): void;
-    /**
-     * #action
-     */
     updateBookmarkLabel(bookmark: IExtendedLabeledRegionModel, label: string): void;
-    /**
-     * #action
-     */
     updateBookmarkHighlight(bookmark: IExtendedLabeledRegionModel, color: string): void;
-    /**
-     * #action
-     */
     updateBulkBookmarkHighlights(color: string): void;
-    /**
-     * #action
-     */
     setSelectedBookmarks(bookmarks: IExtendedLabeledRegionModel[]): void;
-    /**
-     * #action
-     */
     setBookmarkedRegions(regions: IMSTArray<typeof LabeledRegionModel>): void;
-    /**
-     * #action
-     */
-    setHighlightToggle(toggle: boolean): void;
-    /**
-     * #action
-     */
-    setLabelToggle(toggle: boolean): void;
+    setBookmarkHighlightsVisible(arg: boolean): void;
+    setBookmarkLabelsVisible(arg: boolean): void;
 } & {
-    /**
-     * #action
-     */
     clearAllBookmarks(): void;
-    /**
-     * #action
-     */
     clearSelectedBookmarks(): void;
     removeBookmarkObject(arg: Instance<typeof LabeledRegionModel>): void;
 } & {

package/esm/GridBookmarkWidget/model.js

@@ -1,7 +1,7 @@
-import { types, cast, addDisposer, } from 'mobx-state-tree';
-import { Region as RegionModel, ElementId } from '@jbrowse/core/util/types/mst';
 import { getSession, localStorageGetItem, localStorageSetItem, } from '@jbrowse/core/util';
+import { ElementId, Region as RegionModel } from '@jbrowse/core/util/types/mst';
 import { autorun } from 'mobx';
+import { addDisposer, cast, types } from 'mobx-state-tree';
 const LabeledRegionModel = types
     .compose(RegionModel, types.model('Label', {
     label: types.optional(types.string, ''),
@@ -21,24 +21,11 @@ const SharedBookmarksModel = types.model('SharedBookmarksModel', {
 const localStorageKeyF = () => typeof window !== 'undefined'
     ? `bookmarks-${[window.location.host + window.location.pathname].join('-')}`
     : 'empty';
-/**
- * #stateModel GridBookmarkWidgetModel
- */
 export default function f(_pluginManager) {
     return types
         .model('GridBookmarkModel', {
-        /**
-         * #property
-         */
         id: ElementId,
-        /**
-         * #property
-         */
         type: types.literal('GridBookmarkWidget'),
-        /**
-         * #property
-         * removed by postProcessSnapshot, only loaded from localStorage
-         */
         bookmarks: types.optional(types.array(LabeledRegionModel), () => JSON.parse(localStorageGetItem(localStorageKeyF()) || '[]')),
     })
         .volatile(() => ({
@@ -46,167 +33,104 @@ export default function f(_pluginManager) {
         selectedAssembliesPre: undefined,
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get bookmarkAssemblies() {
             return [...new Set(self.bookmarks.map(r => r.assemblyName))];
         },
-        /**
-         * #getter
-         */
         get validAssemblies() {
             const { assemblyManager } = getSession(self);
             return new Set(this.bookmarkAssemblies.filter(a => assemblyManager.get(a)));
         },
-        /**
-         * #getter
-         */
         get areBookmarksHighlightedOnAllOpenViews() {
             const { views } = getSession(self);
-            return views.every(v => 'showBookmarkHighlights' in v ? v.showBookmarkHighlights : true);
+            return views.every(v => 'bookmarkHighlightsVisible' in v ? v.bookmarkHighlightsVisible : true);
         },
-        /**
-         * #getter
-         */
         get areBookmarksHighlightLabelsOnAllOpenViews() {
             const { views } = getSession(self);
-            return views.every(v => 'showBookmarkLabels' in v ? v.showBookmarkLabels : true);
+            return views.every(v => 'bookmarkLabelsVisible' in v ? v.bookmarkLabelsVisible : true);
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get bookmarksWithValidAssemblies() {
             return self.bookmarks.filter(e => self.validAssemblies.has(e.assemblyName));
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get sharedBookmarksModel() {
-            // requires cloning bookmarks with JSON.stringify/parse to avoid duplicate
-            // reference to same object in the same state tree, will otherwise error
-            // when performing share
             return SharedBookmarksModel.create({
                 sharedBookmarks: JSON.parse(JSON.stringify(self.selectedBookmarks)),
             });
         },
-        /**
-         * #getter
-         */
         get allBookmarksModel() {
-            // requires cloning bookmarks with JSON.stringify/parse to avoid duplicate
-            // reference to same object in the same state tree, will otherwise error
-            // when performing share
             return SharedBookmarksModel.create({
                 sharedBookmarks: JSON.parse(JSON.stringify(self.bookmarksWithValidAssemblies)),
             });
         },
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         setSelectedAssemblies(assemblies) {
             self.selectedAssembliesPre = assemblies;
         },
     }))
         .views(self => ({
-        /**
-         * #getter
-         */
         get selectedAssemblies() {
             var _a, _b;
             return ((_b = (_a = self.selectedAssembliesPre) === null || _a === void 0 ? void 0 : _a.filter(f => self.validAssemblies.has(f))) !== null && _b !== void 0 ? _b : [...self.validAssemblies]);
         },
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         importBookmarks(regions) {
             self.bookmarks = cast([...self.bookmarks, ...regions]);
         },
-        /**
-         * #action
-         */
         addBookmark(region) {
             self.bookmarks.push(region);
         },
-        /**
-         * #action
-         */
         removeBookmark(index) {
             self.bookmarks.splice(index, 1);
         },
-        /**
-         * #action
-         */
         updateBookmarkLabel(bookmark, label) {
             bookmark.correspondingObj.setLabel(label);
         },
-        /**
-         * #action
-         */
         updateBookmarkHighlight(bookmark, color) {
             bookmark.correspondingObj.setHighlight(color);
         },
-        /**
-         * #action
-         */
         updateBulkBookmarkHighlights(color) {
             self.selectedBookmarks.forEach(bookmark => {
                 this.updateBookmarkHighlight(bookmark, color);
             });
         },
-        /**
-         * #action
-         */
         setSelectedBookmarks(bookmarks) {
             self.selectedBookmarks = bookmarks;
         },
-        /**
-         * #action
-         */
         setBookmarkedRegions(regions) {
             self.bookmarks = cast(regions);
         },
-        /**
-         * #action
-         */
-        setHighlightToggle(toggle) {
+        setBookmarkHighlightsVisible(arg) {
             const { views } = getSession(self);
             views.forEach(view => {
-                var _a;
-                // @ts-expect-error
-                (_a = view.toggleShowBookmarkHighlights) === null || _a === void 0 ? void 0 : _a.call(view, toggle);
+                var _a, _b;
+                (_a = view.setBookmarkHighlightsVisible) === null || _a === void 0 ? void 0 : _a.call(view, arg);
+                (_b = view.views) === null || _b === void 0 ? void 0 : _b.map(view => {
+                    var _a;
+                    (_a = view.setBookmarkHighlightsVisible) === null || _a === void 0 ? void 0 : _a.call(view, arg);
+                });
             });
         },
-        /**
-         * #action
-         */
-        setLabelToggle(toggle) {
+        setBookmarkLabelsVisible(arg) {
             const { views } = getSession(self);
             views.forEach(view => {
-                var _a;
-                // @ts-expect-error
-                (_a = view.toggleShowBookmarkLabels) === null || _a === void 0 ? void 0 : _a.call(view, toggle);
+                var _a, _b;
+                (_a = view.setBookmarkLabelsVisible) === null || _a === void 0 ? void 0 : _a.call(view, arg);
+                (_b = view.views) === null || _b === void 0 ? void 0 : _b.map(view => {
+                    var _a;
+                    (_a = view.setBookmarkHighlightsVisible) === null || _a === void 0 ? void 0 : _a.call(view, arg);
+                });
             });
         },
     }))
         .actions(self => ({
-        /**
-         * #action
-         */
         clearAllBookmarks() {
             self.setBookmarkedRegions(self.bookmarks.filter(bookmark => !self.validAssemblies.has(bookmark.assemblyName)));
         },
-        /**
-         * #action
-         */
         clearSelectedBookmarks() {
             for (const bookmark of self.selectedBookmarks) {
                 self.bookmarks.remove(bookmark.correspondingObj);

package/esm/GridBookmarkWidget/sessionSharing.d.ts

@@ -3,4 +3,4 @@ export declare function shareSessionToDynamo(session: unknown, url: string, refe
     encryptedSession: string;
     password: string;
 }>;
-export declare function readSessionFromDynamo(baseUrl: string, sessionQueryParam: string, password: string, signal?: AbortSignal): Promise<string>;
+export declare function readSessionFromDynamo(baseUrl: string, sessionQueryParam: string, password: string): Promise<string>;

package/esm/GridBookmarkWidget/sessionSharing.js

@@ -1,6 +1,4 @@
-// duplicated from products/jbrowse-web/src/sessionSharing.ts ; could possibly be moved into a higher directory and shared between the two
 import { toUrlSafeB64 } from './utils';
-// from https://stackoverflow.com/questions/1349404/
 function generateUID(length) {
     return window
         .btoa([...window.crypto.getRandomValues(new Uint8Array(length * 2))]
@@ -28,7 +26,6 @@ function getErrorMsg(err) {
         return err;
     }
 }
-// writes the encrypted session, current datetime, and referer to DynamoDB
 export async function shareSessionToDynamo(session, url, referer) {
     const sess = await toUrlSafeB64(JSON.stringify(session));
     const password = generateUID(5);
@@ -53,15 +50,12 @@ export async function shareSessionToDynamo(session, url, referer) {
         password,
     };
 }
-export async function readSessionFromDynamo(baseUrl, sessionQueryParam, password, signal) {
+export async function readSessionFromDynamo(baseUrl, sessionQueryParam, password) {
     const sessionId = sessionQueryParam.split('share-')[1];
     const url = `${baseUrl}?sessionId=${encodeURIComponent(sessionId)}`;
-    const response = await fetch(url, {
-        signal,
-    });
+    const response = await fetch(url);
     if (!response.ok) {
-        const err = await response.text();
-        throw new Error(getErrorMsg(err));
+        throw new Error(getErrorMsg(await response.text()));
     }
     const json = await response.json();
     return decrypt(json.session, password);

package/esm/GridBookmarkWidget/types.d.ts

@@ -1,4 +1,4 @@
-import { Region } from '@jbrowse/core/util/types';
+import type { Region } from '@jbrowse/core/util/types';
 export interface LabeledRegion extends Region {
     label: string;
 }

package/esm/GridBookmarkWidget/utils.d.ts

@@ -1,21 +1,7 @@
-import { AbstractViewModel } from '@jbrowse/core/util/types';
-import { GridBookmarkModel } from './model';
+import type { GridBookmarkModel } from './model';
+import type { AbstractViewModel } from '@jbrowse/core/util/types';
 export declare function navToBookmark(locString: string, assembly: string, views: AbstractViewModel[], model: GridBookmarkModel): Promise<void>;
 export declare function downloadBookmarkFile(fileFormat: string, model: GridBookmarkModel): void;
-/**
- * Pad the end of a base64 string with "=" to make it valid
- * @param b64 - unpadded b64 string
- */
 export declare function b64PadSuffix(b64: string): string;
-/**
- * Decode and inflate a url-safe base64 to a string
- * See {@link https://en.wikipedia.org/wiki/Base64#URL_applications}
- * @param b64 - a base64 string to decode and inflate
- */
 export declare function fromUrlSafeB64(b64: string): Promise<string>;
-/**
- * Compress and encode a string as url-safe base64
- * See {@link https://en.wikipedia.org/wiki/Base64#URL_applications}
- * @param str-  a string to compress and encode
- */
 export declare function toUrlSafeB64(str: string): Promise<string>;

package/esm/GridBookmarkWidget/utils.js

@@ -1,18 +1,12 @@
+import { assembleLocString, getSession } from '@jbrowse/core/util';
 import { saveAs } from 'file-saver';
-import { getSession, assembleLocString } from '@jbrowse/core/util';
 export async function navToBookmark(locString, assembly, views, model) {
     const session = getSession(model);
     try {
-        // get the focused view
         let view = views.find(view => view.id === session.focusedViewId);
-        // check if the focused view is the appropriate assembly, if not proceed
         if ((view === null || view === void 0 ? void 0 : view.assemblyNames[0]) !== assembly) {
-            view = views.find(elt => 
-            // @ts-expect-error
-            elt.type === 'LinearGenomeView' && elt.assemblyNames[0] === assembly);
+            view = views.find(elt => elt.type === 'LinearGenomeView' && elt.assemblyNames[0] === assembly);
         }
-        // if no view is opened of the selectedAssembly, open a new
-        // view with that assembly
         if (!view) {
             const newViewId = `${model.id}_${assembly}`;
             view = session.addView('LinearGenomeView', {
@@ -55,7 +49,6 @@ export function downloadBookmarkFile(fileFormat, model) {
         }
     }
     else {
-        // TSV
         const fileHeader = 'chrom\tstart\tend\tlabel\tassembly_name\tcoord_range\n';
         const fileContents = bookmarksToDownload
             .map(bookmark => {
@@ -72,10 +65,6 @@ export function downloadBookmarkFile(fileFormat, model) {
         saveAs(blob, fileName);
     }
 }
-/**
- * Pad the end of a base64 string with "=" to make it valid
- * @param b64 - unpadded b64 string
- */
 export function b64PadSuffix(b64) {
     let num = 0;
     const mo = b64.length % 4;
@@ -94,11 +83,6 @@ export function b64PadSuffix(b64) {
     }
     return b64 + '='.repeat(num);
 }
-/**
- * Decode and inflate a url-safe base64 to a string
- * See {@link https://en.wikipedia.org/wiki/Base64#URL_applications}
- * @param b64 - a base64 string to decode and inflate
- */
 export async function fromUrlSafeB64(b64) {
     const originalB64 = b64PadSuffix(b64.replaceAll('-', '+').replaceAll('_', '/'));
     const { toByteArray } = await import('base64-js');
@@ -107,11 +91,6 @@ export async function fromUrlSafeB64(b64) {
     const inflated = inflate(bytes);
     return new TextDecoder().decode(inflated);
 }
-/**
- * Compress and encode a string as url-safe base64
- * See {@link https://en.wikipedia.org/wiki/Base64#URL_applications}
- * @param str-  a string to compress and encode
- */
 export async function toUrlSafeB64(str) {
     const bytes = new TextEncoder().encode(str);
     const { deflate } = await import('pako');

package/esm/index.d.ts

@@ -1,5 +1,5 @@
 import Plugin from '@jbrowse/core/Plugin';
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default class GridBookmarkPlugin extends Plugin {
     name: string;
     install(pluginManager: PluginManager): void;