@jbrowse/plugin-grid-bookmark 2.17.0 → 3.0.0

package/dist/GridBookmarkWidget/components/Highlight/OverviewHighlight.js

@@ -1,33 +1,11 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const util_1 = require("@jbrowse/core/util");
 const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const mui_1 = require("tss-react/mui");
 const useStyles = (0, mui_1.makeStyles)()({
     highlight: {
         height: '100%',
@@ -39,7 +17,7 @@ const OverviewHighlight = (0, mobx_react_1.observer)(function OverviewHighlight(
     const session = (0, util_1.getSession)(model);
     const { classes } = useStyles();
     const { assemblyManager } = session;
-    const { showBookmarkHighlights, showBookmarkLabels } = model;
+    const { bookmarkHighlightsVisible, bookmarkLabelsVisible } = model;
     const bookmarkWidget = session.widgets.get('GridBookmark');
     (0, react_1.useEffect)(() => {
         if (!bookmarkWidget) {
@@ -47,7 +25,7 @@ const OverviewHighlight = (0, mobx_react_1.observer)(function OverviewHighlight(
         }
     }, [session, bookmarkWidget]);
     const assemblyNames = new Set(model.assemblyNames);
-    return showBookmarkHighlights && (bookmarkWidget === null || bookmarkWidget === void 0 ? void 0 : bookmarkWidget.bookmarks)
+    return bookmarkHighlightsVisible && (bookmarkWidget === null || bookmarkWidget === void 0 ? void 0 : bookmarkWidget.bookmarks)
         ? bookmarkWidget.bookmarks
             .filter(r => assemblyNames.has(r.assemblyName))
             .map(r => {
@@ -69,14 +47,13 @@ const OverviewHighlight = (0, mobx_react_1.observer)(function OverviewHighlight(
             .filter(util_1.notEmpty)
             .map((obj, idx) => {
             const { left, width, highlight, label } = obj;
-            return (react_1.default.createElement(material_1.Tooltip, { key: `${JSON.stringify(obj)}-${idx}`, title: showBookmarkLabels ? label : '', arrow: true },
-                react_1.default.createElement("div", { className: classes.highlight, style: {
+            return ((0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: bookmarkLabelsVisible ? label : '', arrow: true, children: (0, jsx_runtime_1.jsx)("div", { className: classes.highlight, style: {
                         left,
                         width,
                         background: highlight,
                         borderLeft: `1px solid ${highlight}`,
                         borderRight: `1px solid ${highlight}`,
-                    } })));
+                    } }) }, `${JSON.stringify(obj)}-${idx}`));
         })
         : null;
 });

package/dist/GridBookmarkWidget/components/Highlight/index.d.ts

@@ -1,2 +1,2 @@
-import PluginManager from '@jbrowse/core/PluginManager';
+import type PluginManager from '@jbrowse/core/PluginManager';
 export default function AddHighlightModelF(pluginManager: PluginManager): void;

package/dist/GridBookmarkWidget/components/Highlight/index.js

@@ -4,25 +4,20 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
 };
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.default = AddHighlightModelF;
-const react_1 = __importDefault(require("react"));
-// locals
+const jsx_runtime_1 = require("react/jsx-runtime");
 const Highlight_1 = __importDefault(require("./Highlight"));
 const OverviewHighlight_1 = __importDefault(require("./OverviewHighlight"));
 function AddHighlightModelF(pluginManager) {
-    pluginManager.addToExtensionPoint('LinearGenomeView-TracksContainerComponent', 
-    // @ts-expect-error
-    (rest, { model }) => {
+    pluginManager.addToExtensionPoint('LinearGenomeView-TracksContainerComponent', (rest, { model }) => {
         return [
             ...(rest || []),
-            react_1.default.createElement(Highlight_1.default, { key: "highlight_grid_bookmark", model: model }),
+            (0, jsx_runtime_1.jsx)(Highlight_1.default, { model: model }, "highlight_grid_bookmark"),
         ];
     });
-    pluginManager.addToExtensionPoint('LinearGenomeView-OverviewScalebarComponent', 
-    // @ts-expect-error
-    (rest, { model, overview }) => {
+    pluginManager.addToExtensionPoint('LinearGenomeView-OverviewScalebarComponent', (rest, { model, overview }) => {
         return [
             ...(rest || []),
-            react_1.default.createElement(OverviewHighlight_1.default, { key: "overview_highlight_grid_bookmark", model: model, overview: overview }),
+            (0, jsx_runtime_1.jsx)(OverviewHighlight_1.default, { model: model, overview: overview }, "overview_highlight_grid_bookmark"),
         ];
     });
 }

package/dist/GridBookmarkWidget/components/dialogs/DeleteBookmarksDialog.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { GridBookmarkModel } from '../../model';
+import type { GridBookmarkModel } from '../../model';
 declare const DeleteBookmarksDialog: ({ onClose, model, }: {
     onClose: () => void;
     model: GridBookmarkModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default DeleteBookmarksDialog;

package/dist/GridBookmarkWidget/components/dialogs/DeleteBookmarksDialog.js

@@ -1,31 +1,20 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
+const jsx_runtime_1 = require("react/jsx-runtime");
 const ui_1 = require("@jbrowse/core/ui");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const DeleteBookmarksDialog = (0, mobx_react_1.observer)(function ({ onClose, model, }) {
     const { selectedBookmarks } = model;
     const deleteAll = selectedBookmarks.length === 0;
-    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: onClose, title: "Delete bookmarks" },
-        react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement(material_1.Alert, { severity: "warning" }, deleteAll ? (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement("span", null, "All bookmarks will be deleted."),
-                react_1.default.createElement("br", null),
-                react_1.default.createElement("span", null, "Use the checkboxes to select individual bookmarks to delete."))) : ('Only selected bookmarks will be deleted.'))),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                    onClose();
-                } }, "Cancel"),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
-                    if (deleteAll) {
-                        model.clearAllBookmarks();
-                    }
-                    model.clearSelectedBookmarks();
-                    onClose();
-                } }, "Confirm"))));
+    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: onClose, title: "Delete bookmarks", children: [(0, jsx_runtime_1.jsx)(material_1.DialogContent, { children: (0, jsx_runtime_1.jsx)(material_1.Alert, { severity: "warning", children: deleteAll ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("span", { children: "All bookmarks will be deleted." }), (0, jsx_runtime_1.jsx)("br", {}), (0, jsx_runtime_1.jsx)("span", { children: "Use the checkboxes to select individual bookmarks to delete." })] })) : ('Only selected bookmarks will be deleted.') }) }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
+                            onClose();
+                        }, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
+                            if (deleteAll) {
+                                model.clearAllBookmarks();
+                            }
+                            model.clearSelectedBookmarks();
+                            onClose();
+                        }, children: "Confirm" })] })] }));
 });
 exports.default = DeleteBookmarksDialog;

package/dist/GridBookmarkWidget/components/dialogs/EditHighlightColorDialog.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { GridBookmarkModel } from '../../model';
+import type { GridBookmarkModel } from '../../model';
 declare const EditHighlightColorDialog: ({ onClose, model, }: {
     onClose: () => void;
     model: GridBookmarkModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default EditHighlightColorDialog;

package/dist/GridBookmarkWidget/components/dialogs/EditHighlightColorDialog.js

@@ -1,52 +1,23 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const ui_1 = require("@jbrowse/core/ui");
 const ColorPicker_1 = require("@jbrowse/core/ui/ColorPicker");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const EditHighlightColorDialog = (0, mobx_react_1.observer)(function ({ onClose, model, }) {
     var _a, _b;
     const { selectedBookmarks } = model;
     const editNone = selectedBookmarks.length === 0;
     const [color, setColor] = (0, react_1.useState)((_b = (_a = selectedBookmarks[0]) === null || _a === void 0 ? void 0 : _a.highlight) !== null && _b !== void 0 ? _b : 'rgba(247, 129, 192, 0.35)');
-    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: onClose, title: "Highlight bookmarks" },
-        react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement(material_1.Typography, { variant: "h6" }, "Bulk highlight selector"),
-            react_1.default.createElement(material_1.Alert, { severity: "info" }, editNone ? (react_1.default.createElement("span", null, "Use the checkboxes to select individual bookmarks to edit.")) : ('Only selected bookmarks will be edited.')),
-            !editNone ? (react_1.default.createElement(ColorPicker_1.ColorPicker, { color: color, onChange: event => {
-                    setColor(event);
-                } })) : null),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                    onClose();
-                } }, "Cancel"),
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
-                    model.updateBulkBookmarkHighlights(color);
-                    onClose();
-                } }, "Confirm"))));
+    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: onClose, title: "Highlight bookmarks", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h6", children: "Bulk highlight selector" }), (0, jsx_runtime_1.jsx)(material_1.Alert, { severity: "info", children: editNone ? ((0, jsx_runtime_1.jsx)("span", { children: "Use the checkboxes to select individual bookmarks to edit." })) : ('Only selected bookmarks will be edited.') }), !editNone ? ((0, jsx_runtime_1.jsx)(ColorPicker_1.ColorPicker, { color: color, onChange: event => {
+                            setColor(event);
+                        } })) : null] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
+                            onClose();
+                        }, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
+                            model.updateBulkBookmarkHighlights(color);
+                            onClose();
+                        }, children: "Confirm" })] })] }));
 });
 exports.default = EditHighlightColorDialog;

package/dist/GridBookmarkWidget/components/dialogs/ExportBookmarksDialog.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { GridBookmarkModel } from '../../model';
+import type { GridBookmarkModel } from '../../model';
 declare const ExportBookmarksDialog: ({ model, onClose, }: {
     model: GridBookmarkModel;
-    onClose: (arg: boolean) => void;
-}) => React.JSX.Element;
+    onClose: () => void;
+}) => import("react/jsx-runtime").JSX.Element;
 export default ExportBookmarksDialog;

package/dist/GridBookmarkWidget/components/dialogs/ExportBookmarksDialog.js

@@ -1,38 +1,15 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
 const ui_1 = require("@jbrowse/core/ui");
-// Icons
 const GetApp_1 = __importDefault(require("@mui/icons-material/GetApp"));
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
+const mui_1 = require("tss-react/mui");
 const utils_1 = require("../../utils");
 const useStyles = (0, mui_1.makeStyles)()({
     flexItem: {
@@ -46,28 +23,18 @@ const useStyles = (0, mui_1.makeStyles)()({
         gap: '5px',
     },
 });
-const ExportBookmarksDialog = (0, mobx_react_1.observer)(function ExportBookmarksDialog({ model, onClose, }) {
+const ExportBookmarksDialog = (0, mobx_react_1.observer)(function ({ model, onClose, }) {
     const { classes } = useStyles();
     const [fileType, setFileType] = (0, react_1.useState)('BED');
     const { selectedBookmarks } = model;
     const exportAll = selectedBookmarks.length === 0;
-    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: onClose, title: "Export bookmarks" },
-        react_1.default.createElement(material_1.DialogContent, { className: classes.container },
-            react_1.default.createElement(material_1.Alert, { severity: "info" }, exportAll ? (react_1.default.createElement(react_1.default.Fragment, null,
-                react_1.default.createElement("span", null, "All bookmarks will be exported."),
-                react_1.default.createElement("br", null),
-                react_1.default.createElement("span", null, "Use the checkboxes to select individual bookmarks to export."))) : ('Only selected bookmarks will be exported.')),
-            react_1.default.createElement("div", { className: classes.flexItem },
-                react_1.default.createElement(material_1.Typography, null, "Format to download:"),
-                react_1.default.createElement(material_1.Select, { size: "small", value: fileType, onChange: event => {
-                        setFileType(event.target.value);
-                    } },
-                    react_1.default.createElement(material_1.MenuItem, { value: "BED" }, "BED"),
-                    react_1.default.createElement(material_1.MenuItem, { value: "TSV" }, "TSV")))),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", startIcon: react_1.default.createElement(GetApp_1.default, null), onClick: () => {
-                    (0, utils_1.downloadBookmarkFile)(fileType, model);
-                    onClose(false);
-                } }, "Download"))));
+    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: () => {
+            onClose();
+        }, title: "Export bookmarks", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.container, children: [(0, jsx_runtime_1.jsx)(material_1.Alert, { severity: "info", children: exportAll ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)("span", { children: "All bookmarks will be exported." }), (0, jsx_runtime_1.jsx)("br", {}), (0, jsx_runtime_1.jsx)("span", { children: "Use the checkboxes to select individual bookmarks to export." })] })) : ('Only selected bookmarks will be exported.') }), (0, jsx_runtime_1.jsxs)("div", { className: classes.flexItem, children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Format to download:" }), (0, jsx_runtime_1.jsxs)(material_1.Select, { size: "small", value: fileType, onChange: event => {
+                                    setFileType(event.target.value);
+                                }, children: [(0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: "BED", children: "BED" }), (0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: "TSV", children: "TSV" })] })] })] }), (0, jsx_runtime_1.jsx)(material_1.DialogActions, { children: (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", startIcon: (0, jsx_runtime_1.jsx)(GetApp_1.default, {}), onClick: () => {
+                        (0, utils_1.downloadBookmarkFile)(fileType, model);
+                        onClose();
+                    }, children: "Download" }) })] }));
 });
 exports.default = ExportBookmarksDialog;

package/dist/GridBookmarkWidget/components/dialogs/HighlightSettingsDialog.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { GridBookmarkModel } from '../../model';
+import type { GridBookmarkModel } from '../../model';
 declare const HighlightSettingsDialog: ({ onClose, model, }: {
     onClose: () => void;
     model: GridBookmarkModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default HighlightSettingsDialog;

package/dist/GridBookmarkWidget/components/dialogs/HighlightSettingsDialog.js

@@ -1,29 +1,16 @@
 "use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importDefault(require("react"));
-const mobx_react_1 = require("mobx-react");
-const material_1 = require("@mui/material");
+const jsx_runtime_1 = require("react/jsx-runtime");
 const ui_1 = require("@jbrowse/core/ui");
+const material_1 = require("@mui/material");
+const mobx_react_1 = require("mobx-react");
 const HighlightSettingsDialog = (0, mobx_react_1.observer)(function ({ onClose, model, }) {
-    return (react_1.default.createElement(ui_1.Dialog, { open: true, onClose: onClose, title: "Highlight bookmarks" },
-        react_1.default.createElement(material_1.DialogContent, null,
-            react_1.default.createElement(material_1.Typography, { variant: "h6" }, "Highlight toggles"),
-            react_1.default.createElement(material_1.Stack, { direction: "row", alignItems: "center" },
-                react_1.default.createElement(material_1.Switch, { "data-testid": "toggle_highlight_all_switch", checked: model.areBookmarksHighlightedOnAllOpenViews, onChange: () => {
-                        model.setHighlightToggle(!model.areBookmarksHighlightedOnAllOpenViews);
-                    } }),
-                react_1.default.createElement(material_1.Typography, null, "Toggle bookmark highlights on all open views")),
-            react_1.default.createElement(material_1.Stack, { direction: "row", alignItems: "center" },
-                react_1.default.createElement(material_1.Switch, { "data-testid": "toggle_highlight_label_all_switch", checked: model.areBookmarksHighlightLabelsOnAllOpenViews, onChange: () => {
-                        model.setLabelToggle(!model.areBookmarksHighlightLabelsOnAllOpenViews);
-                    } }),
-                react_1.default.createElement(material_1.Typography, null, "Toggle 'bookmark' icon on LGV tracks"))),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
-                    onClose();
-                } }, "Close"))));
+    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: onClose, title: "Highlight bookmarks", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h6", children: "Highlight toggles" }), (0, jsx_runtime_1.jsxs)(material_1.Stack, { direction: "row", alignItems: "center", children: [(0, jsx_runtime_1.jsx)(material_1.Switch, { "data-testid": "toggle_highlight_all_switch", checked: model.areBookmarksHighlightedOnAllOpenViews, onChange: () => {
+                                    model.setBookmarkHighlightsVisible(!model.areBookmarksHighlightedOnAllOpenViews);
+                                } }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Toggle bookmark highlights on all open views" })] }), (0, jsx_runtime_1.jsxs)(material_1.Stack, { direction: "row", alignItems: "center", children: [(0, jsx_runtime_1.jsx)(material_1.Switch, { "data-testid": "toggle_highlight_label_all_switch", checked: model.areBookmarksHighlightLabelsOnAllOpenViews, onChange: () => {
+                                    model.setBookmarkLabelsVisible(!model.areBookmarksHighlightLabelsOnAllOpenViews);
+                                } }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Toggle 'bookmark' icon on LGV tracks" })] })] }), (0, jsx_runtime_1.jsx)(material_1.DialogActions, { children: (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
+                        onClose();
+                    }, children: "Close" }) })] }));
 });
 exports.default = HighlightSettingsDialog;

package/dist/GridBookmarkWidget/components/dialogs/ImportBookmarksDialog.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { GridBookmarkModel } from '../../model';
+import type { GridBookmarkModel } from '../../model';
 declare const ImportBookmarksDialog: ({ onClose, model, }: {
     onClose: () => void;
     model: GridBookmarkModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default ImportBookmarksDialog;

package/dist/GridBookmarkWidget/components/dialogs/ImportBookmarksDialog.js

@@ -1,45 +1,21 @@
 "use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || function (mod) {
-    if (mod && mod.__esModule) return mod;
-    var result = {};
-    if (mod != null) for (var k in mod) if (k !== "default" && Object.prototype.hasOwnProperty.call(mod, k)) __createBinding(result, mod, k);
-    __setModuleDefault(result, mod);
-    return result;
-};
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-const react_1 = __importStar(require("react"));
-const mobx_react_1 = require("mobx-react");
+const jsx_runtime_1 = require("react/jsx-runtime");
+const react_1 = require("react");
+const ui_1 = require("@jbrowse/core/ui");
 const util_1 = require("@jbrowse/core/util");
+const io_1 = require("@jbrowse/core/util/io");
 const types_1 = require("@jbrowse/core/util/types");
-const ui_1 = require("@jbrowse/core/ui");
+const ExpandMore_1 = __importDefault(require("@mui/icons-material/ExpandMore"));
+const Publish_1 = __importDefault(require("@mui/icons-material/Publish"));
 const material_1 = require("@mui/material");
-const io_1 = require("@jbrowse/core/util/io");
-const ui_2 = require("@jbrowse/core/ui");
+const mobx_react_1 = require("mobx-react");
 const mui_1 = require("tss-react/mui");
-// icons
-const Publish_1 = __importDefault(require("@mui/icons-material/Publish"));
-const ExpandMore_1 = __importDefault(require("@mui/icons-material/ExpandMore"));
-const utils_1 = require("../../utils");
 const sessionSharing_1 = require("../../sessionSharing");
+const utils_1 = require("../../utils");
 const useStyles = (0, mui_1.makeStyles)()(theme => ({
     expandIcon: {
         color: theme.palette.tertiary.contrastText || '#fff',
@@ -102,56 +78,38 @@ const ImportBookmarksDialog = (0, mobx_react_1.observer)(function ({ onClose, mo
     const { assemblyNames } = session;
     const [selectedAsm, setSelectedAsm] = (0, react_1.useState)(assemblyNames[0]);
     const [expanded, setExpanded] = (0, react_1.useState)('shareLinkAccordion');
-    return (react_1.default.createElement(ui_2.Dialog, { open: true, onClose: onClose, maxWidth: "xl", title: "Import bookmarks" },
-        react_1.default.createElement(material_1.DialogContent, { className: classes.minWidth },
-            react_1.default.createElement(material_1.Accordion, { expanded: expanded === 'shareLinkAccordion', onChange: () => {
-                    setExpanded('shareLinkAccordion');
-                } },
-                react_1.default.createElement(material_1.AccordionSummary, { expandIcon: react_1.default.createElement(ExpandMore_1.default, { className: classes.expandIcon }) },
-                    react_1.default.createElement(material_1.Typography, { style: { display: 'flex', alignItems: 'center', gap: '5px' } }, "Import from share link")),
-                react_1.default.createElement(material_1.AccordionDetails, null,
-                    react_1.default.createElement(material_1.Typography, null, "Paste a bookmark share link generated by the 'Share' button from the bookmarks widget"),
-                    react_1.default.createElement(material_1.TextField, { label: "Enter Share URL", variant: "outlined", fullWidth: true, value: shareLink, onChange: e => {
-                            setShareLink(e.target.value);
-                        } }))),
-            react_1.default.createElement(material_1.Accordion, { expanded: expanded === 'fileAccordion', onChange: () => {
-                    setExpanded('fileAccordion');
-                } },
-                react_1.default.createElement(material_1.AccordionSummary, { expandIcon: react_1.default.createElement(ExpandMore_1.default, { className: classes.expandIcon }) },
-                    react_1.default.createElement(material_1.Typography, null, "Import from file")),
-                react_1.default.createElement(material_1.AccordionDetails, null,
-                    react_1.default.createElement(ui_1.FileSelector, { location: location, setLocation: setLocation, name: "File", description: `Choose a BED or TSV format file to import. Required TSV column headers are "chrom, start, end, label, assembly_name".` }),
-                    react_1.default.createElement(ui_2.AssemblySelector, { onChange: val => {
-                            setSelectedAsm(val);
-                        }, helperText: 'Select the assembly for BED file.', session: session, selected: selectedAsm }))),
-            error ? react_1.default.createElement(ui_1.ErrorMessage, { error: error }) : null),
-        react_1.default.createElement(material_1.DialogActions, null,
-            react_1.default.createElement(material_1.Button, { variant: "contained", color: "secondary", onClick: onClose }, "Cancel"),
-            react_1.default.createElement(material_1.Button, { "data-testid": "dialogImport", variant: "contained", color: "primary", disabled: !location && !shareLink, startIcon: react_1.default.createElement(Publish_1.default, null), onClick: async () => {
-                    try {
-                        if (expanded === 'fileAccordion' && location) {
-                            const data = await (0, io_1.openLocation)(location).readFile('utf8');
-                            const lines = data.split(/\n|\r\n|\r/).filter(f => !!f.trim());
-                            const fileType = guessFileType(lines[0]);
-                            if (fileType === 'BED') {
-                                model.importBookmarks(await getBookmarksFromBEDFile(lines, selectedAsm));
+    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, onClose: onClose, maxWidth: "xl", title: "Import bookmarks", children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.minWidth, children: [(0, jsx_runtime_1.jsxs)(material_1.Accordion, { expanded: expanded === 'shareLinkAccordion', onChange: () => {
+                            setExpanded('shareLinkAccordion');
+                        }, children: [(0, jsx_runtime_1.jsx)(material_1.AccordionSummary, { expandIcon: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, { className: classes.expandIcon }), children: (0, jsx_runtime_1.jsx)(material_1.Typography, { style: { display: 'flex', alignItems: 'center', gap: '5px' }, children: "Import from share link" }) }), (0, jsx_runtime_1.jsxs)(material_1.AccordionDetails, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Paste a bookmark share link generated by the 'Share' button from the bookmarks widget" }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Enter Share URL", variant: "outlined", fullWidth: true, value: shareLink, onChange: e => {
+                                            setShareLink(e.target.value);
+                                        } })] })] }), (0, jsx_runtime_1.jsxs)(material_1.Accordion, { expanded: expanded === 'fileAccordion', onChange: () => {
+                            setExpanded('fileAccordion');
+                        }, children: [(0, jsx_runtime_1.jsx)(material_1.AccordionSummary, { expandIcon: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, { className: classes.expandIcon }), children: (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Import from file" }) }), (0, jsx_runtime_1.jsxs)(material_1.AccordionDetails, { children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { location: location, setLocation: setLocation, name: "File", description: `Choose a BED or TSV format file to import. Required TSV column headers are "chrom, start, end, label, assembly_name".` }), (0, jsx_runtime_1.jsx)(ui_1.AssemblySelector, { onChange: val => {
+                                            setSelectedAsm(val);
+                                        }, helperText: 'Select the assembly for BED file.', session: session, selected: selectedAsm })] })] }), error ? (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error }) : null] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: onClose, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { "data-testid": "dialogImport", variant: "contained", color: "primary", disabled: !location && !shareLink, startIcon: (0, jsx_runtime_1.jsx)(Publish_1.default, {}), onClick: async () => {
+                            try {
+                                if (expanded === 'fileAccordion' && location) {
+                                    const data = await (0, io_1.openLocation)(location).readFile('utf8');
+                                    const lines = data.split(/\n|\r\n|\r/).filter(f => !!f.trim());
+                                    const fileType = guessFileType(lines[0]);
+                                    if (fileType === 'BED') {
+                                        model.importBookmarks(await getBookmarksFromBEDFile(lines, selectedAsm));
+                                    }
+                                    else {
+                                        model.importBookmarks(await getBookmarksFromTSVFile(lines));
+                                    }
+                                }
+                                else if (expanded === 'shareLinkAccordion' &&
+                                    shareLink &&
+                                    (0, types_1.isSessionWithShareURL)(session)) {
+                                    model.importBookmarks(await getBookmarksFromShareLink(shareLink, session.shareURL));
+                                }
+                                onClose();
                             }
-                            else {
-                                // TSV
-                                model.importBookmarks(await getBookmarksFromTSVFile(lines));
+                            catch (e) {
+                                console.error(e);
+                                setError(e);
                             }
-                        }
-                        else if (expanded === 'shareLinkAccordion' &&
-                            shareLink &&
-                            (0, types_1.isSessionWithShareURL)(session)) {
-                            model.importBookmarks(await getBookmarksFromShareLink(shareLink, session.shareURL));
-                        }
-                        onClose();
-                    }
-                    catch (e) {
-                        console.error(e);
-                        setError(e);
-                    }
-                } }, "Import"))));
+                        }, children: "Import" })] })] }));
 });
 exports.default = ImportBookmarksDialog;

package/dist/GridBookmarkWidget/components/dialogs/ShareBookmarksDialog.d.ts

@@ -1,7 +1,6 @@
-import React from 'react';
-import { GridBookmarkModel } from '../../model';
+import type { GridBookmarkModel } from '../../model';
 declare const ShareBookmarksDialog: ({ onClose, model, }: {
     onClose: () => void;
     model: GridBookmarkModel;
-}) => React.JSX.Element;
+}) => import("react/jsx-runtime").JSX.Element;
 export default ShareBookmarksDialog;