@jbrowse/plugin-dotplot-view 2.11.2 → 2.12.1

package/esm/DotplotView/1dview.d.ts

@@ -1,24 +1,13 @@
 import { Instance } from 'mobx-state-tree';
 declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        refName: import("mobx-state-tree").ISimpleType<string>;
-        start: import("mobx-state-tree").ISimpleType<number>;
-        end: import("mobx-state-tree").ISimpleType<number>;
-        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    } & {
-        assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-         * #getter
-         */
-    }, {
-        setRefName(newRefName: string): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
     bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined;
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -45,24 +34,24 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed: boolean;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action
@@ -101,24 +90,13 @@ declare const Dotplot1DView: import("mobx-state-tree").IModelType<{
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 declare const DotplotHView: import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        refName: import("mobx-state-tree").ISimpleType<string>;
-        start: import("mobx-state-tree").ISimpleType<number>;
-        end: import("mobx-state-tree").ISimpleType<number>;
-        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    } & {
-        assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-         * #getter
-         */
-    }, {
-        setRefName(newRefName: string): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
     bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined;
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -145,24 +123,24 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed: boolean;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action
@@ -203,24 +181,13 @@ declare const DotplotHView: import("mobx-state-tree").IModelType<{
 }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
 declare const DotplotVView: import("mobx-state-tree").IModelType<{
     id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-        refName: import("mobx-state-tree").ISimpleType<string>;
-        start: import("mobx-state-tree").ISimpleType<number>;
-        end: import("mobx-state-tree").ISimpleType<number>;
-        reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    } & {
-        assemblyName: import("mobx-state-tree").ISimpleType<string>; /**
-         * #getter
-         */
-    }, {
-        setRefName(newRefName: string): void;
-    }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+    displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
     bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
     interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
 }, {
-    features: import("@jbrowse/core/util").Feature[] | undefined;
+    features: undefined | import("@jbrowse/core/util").Feature[];
     volatileWidth: number;
 } & {
     setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -247,24 +214,24 @@ declare const DotplotVView: import("mobx-state-tree").IModelType<{
         offset: number;
         start: number;
         end: number;
-        reversed: boolean;
+        reversed?: boolean;
     };
     bpToPx({ refName, coord, regionNumber, }: {
         refName: string;
         coord: number;
-        regionNumber?: number | undefined;
+        regionNumber?: number;
     }): number | undefined;
 } & {
     setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
     showAllRegions(): void;
     zoomOut(): void;
     zoomIn(): void;
-    zoomTo(bpPerPx: number, offset?: number | undefined): number;
+    zoomTo(bpPerPx: number, offset?: number): number;
     scrollTo(offsetPx: number): number;
     centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
     scroll(distance: number): number;
 } & {
-    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+    moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
 } & {
     /**
      * #action

package/esm/DotplotView/components/DotplotView.js

@@ -3,7 +3,6 @@ import { LoadingEllipses, Menu, ResizeHandle } from '@jbrowse/core/ui';
 import { observer } from 'mobx-react';
 import { transaction } from 'mobx';
 import { makeStyles } from 'tss-react/mui';
-import normalizeWheel from 'normalize-wheel';
 import ImportForm from './ImportForm';
 import Header from './Header';
 import Grid from './Grid';
@@ -93,11 +92,10 @@ const DotplotViewInternal = observer(function ({ model, }) {
         (cursorMode === 'crosshair' && !ctrlKeyWasUsed);
     // use non-React wheel handler to properly prevent body scrolling
     useEffect(() => {
-        function onWheel(origEvent) {
-            const event = normalizeWheel(origEvent);
-            origEvent.preventDefault();
-            distanceX.current += event.pixelX;
-            distanceY.current -= event.pixelY;
+        function onWheel(event) {
+            event.preventDefault();
+            distanceX.current += event.deltaX;
+            distanceY.current -= event.deltaY;
             if (!scheduled.current) {
                 scheduled.current = true;
                 window.requestAnimationFrame(() => {

package/esm/DotplotView/components/DotplotWarnings.js

@@ -6,10 +6,12 @@ const WarningDialog = lazy(() => import('./WarningDialog'));
 const DotplotWarnings = observer(function ({ model, }) {
     const trackWarnings = model.tracks.filter(t => { var _a; return (_a = t.displays[0].warnings) === null || _a === void 0 ? void 0 : _a.length; });
     const [shown, setShown] = useState(false);
-    return trackWarnings.length ? (React.createElement(Alert, { severity: "warning" },
+    const [hide, setHide] = useState(false);
+    return trackWarnings.length && !hide ? (React.createElement(Alert, { severity: "warning" },
         "Warnings during render",
         ' ',
         React.createElement(Button, { onClick: () => setShown(true) }, "More info"),
-        shown ? (React.createElement(WarningDialog, { trackWarnings: trackWarnings, handleClose: () => setShown(false) })) : null)) : null;
+        shown ? (React.createElement(WarningDialog, { trackWarnings: trackWarnings, handleClose: () => setShown(false) })) : null,
+        React.createElement(Button, { variant: "contained", onClick: () => setHide(true) }, "Dismiss"))) : null;
 });
 export default DotplotWarnings;

package/esm/DotplotView/model.d.ts

@@ -36,22 +36,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
     drawCigar: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>;
     hview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
         bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
         offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -63,12 +54,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly displayedRegionsTotalPx: number;
         readonly maxOffset: number;
         readonly minOffset: number;
-        readonly totalBp: number; /**
-         * #stateModel DotplotView
-         * #category view
-         * extends
-         * - [BaseViewModel](../baseviewmodel)
-         */
+        readonly totalBp: number;
     } & {
         readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -77,34 +63,30 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         pxToBp(px: number): {
             coord: number;
             index: number;
-            refName: string; /**
-             * #property
-             */
+            refName: string;
             oob: boolean;
             assemblyName: string;
             offset: number;
             start: number;
             end: number;
-            reversed: boolean;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
         setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
-        zoomOut(): void; /**
-         * #property
-         */
+        zoomOut(): void;
         zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -120,22 +102,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
     }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>;
     vview: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
         bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
         offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -147,12 +120,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly displayedRegionsTotalPx: number;
         readonly maxOffset: number;
         readonly minOffset: number;
-        readonly totalBp: number; /**
-         * #stateModel DotplotView
-         * #category view
-         * extends
-         * - [BaseViewModel](../baseviewmodel)
-         */
+        readonly totalBp: number;
     } & {
         readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -161,34 +129,30 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         pxToBp(px: number): {
             coord: number;
             index: number;
-            refName: string; /**
-             * #property
-             */
+            refName: string;
             oob: boolean;
             assemblyName: string;
             offset: number;
             start: number;
             end: number;
-            reversed: boolean;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
         setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
-        zoomOut(): void; /**
-         * #property
-         */
+        zoomOut(): void;
         zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -217,13 +181,15 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly canConfigure: boolean | ({
             [x: string]: any;
         } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: unknown): any;
+            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
+                [x: string]: any;
+            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
         } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>) | undefined;
     } & {
         setMinimized(flag: boolean): void;
-        showDisplay(displayId: string, initialSnapshot?: {} | undefined): void;
+        showDisplay(displayId: string, initialSnapshot?: {}): void;
         hideDisplay(displayId: string): number;
-        replaceDisplay(oldId: string, newId: string, initialSnapshot?: {} | undefined): void;
+        replaceDisplay(oldId: string, newId: string, initialSnapshot?: {}): void;
     } & {
         trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | {
             type: string;
@@ -307,31 +273,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
      */
     readonly views: ({
         id: string;
-        displayedRegions: import("mobx-state-tree").IMSTArray<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>> & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>>;
+        displayedRegions: import("@jbrowse/core/util").Region[] & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>>;
         bpPerPx: number;
         offsetPx: number;
         interRegionPaddingWidth: number;
         minimumBlockWidth: number;
     } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -343,12 +291,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly displayedRegionsTotalPx: number;
         readonly maxOffset: number;
         readonly minOffset: number;
-        readonly totalBp: number; /**
-         * #stateModel DotplotView
-         * #category view
-         * extends
-         * - [BaseViewModel](../baseviewmodel)
-         */
+        readonly totalBp: number;
     } & {
         readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -357,34 +300,30 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         pxToBp(px: number): {
             coord: number;
             index: number;
-            refName: string; /**
-             * #property
-             */
+            refName: string;
             oob: boolean;
             assemblyName: string;
             offset: number;
             start: number;
             end: number;
-            reversed: boolean;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
         setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
-        zoomOut(): void; /**
-         * #property
-         */
+        zoomOut(): void;
         zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -399,22 +338,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly width: any;
     } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{
         id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-        displayedRegions: import("mobx-state-tree").IArrayType<import("mobx-state-tree").IModelType<{
-            refName: import("mobx-state-tree").ISimpleType<string>;
-            start: import("mobx-state-tree").ISimpleType<number>;
-            end: import("mobx-state-tree").ISimpleType<number>;
-            reversed: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-        } & {
-            assemblyName: import("mobx-state-tree").ISimpleType<string>;
-        }, {
-            setRefName(newRefName: string): void;
-        }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>;
+        displayedRegions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[], import("@jbrowse/core/util").Region[]>, [undefined]>;
         bpPerPx: import("mobx-state-tree").IType<number | undefined, number, number>;
         offsetPx: import("mobx-state-tree").IType<number | undefined, number, number>;
         interRegionPaddingWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
         minimumBlockWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
     }, {
-        features: import("@jbrowse/core/util").Feature[] | undefined;
+        features: undefined | import("@jbrowse/core/util").Feature[];
         volatileWidth: number;
     } & {
         setDisplayedRegions(regions: import("@jbrowse/core/util").Region[]): void;
@@ -426,12 +356,7 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         readonly displayedRegionsTotalPx: number;
         readonly maxOffset: number;
         readonly minOffset: number;
-        readonly totalBp: number; /**
-         * #stateModel DotplotView
-         * #category view
-         * extends
-         * - [BaseViewModel](../baseviewmodel)
-         */
+        readonly totalBp: number;
     } & {
         readonly dynamicBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
         readonly staticBlocks: import("@jbrowse/core/util/blockTypes").BlockSet;
@@ -440,34 +365,30 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
         pxToBp(px: number): {
             coord: number;
             index: number;
-            refName: string; /**
-             * #property
-             */
+            refName: string;
             oob: boolean;
             assemblyName: string;
             offset: number;
             start: number;
             end: number;
-            reversed: boolean;
+            reversed?: boolean;
         };
         bpToPx({ refName, coord, regionNumber, }: {
             refName: string;
             coord: number;
-            regionNumber?: number | undefined;
+            regionNumber?: number;
         }): number | undefined;
     } & {
         setFeatures(features: import("@jbrowse/core/util").Feature[]): void;
         showAllRegions(): void;
-        zoomOut(): void; /**
-         * #property
-         */
+        zoomOut(): void;
         zoomIn(): void;
-        zoomTo(bpPerPx: number, offset?: number | undefined): number;
+        zoomTo(bpPerPx: number, offset?: number): number;
         scrollTo(offsetPx: number): number;
         centerAt(coord: number, refName: string | undefined, regionNumber: number): void;
         scroll(distance: number): number;
     } & {
-        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset | undefined): void;
+        moveTo(start?: import("@jbrowse/core/util/Base1DUtils").BpOffset, end?: import("@jbrowse/core/util/Base1DUtils").BpOffset): void;
     } & {
         setScaleFactor(n: number): void;
         center(): void;
@@ -571,15 +492,13 @@ export default function stateModelFactory(pm: PluginManager): import("mobx-state
     getCoords(mousedown: Coord, mouseup: Coord): {
         coord: number;
         index: number;
-        refName: string; /**
-         * #property
-         */
+        refName: string;
         oob: boolean;
         assemblyName: string;
         offset: number;
         start: number;
         end: number;
-        reversed: boolean;
+        reversed?: boolean;
     }[] | undefined;
     /**
      * #action

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@jbrowse/plugin-dotplot-view",
-  "version": "2.11.2",
+  "version": "2.12.1",
   "description": "JBrowse 2 dotplot view",
   "keywords": [
     "jbrowse",
@@ -40,10 +40,8 @@
     "@mui/icons-material": "^5.0.1",
     "@mui/x-data-grid": "^7.0.0",
     "@types/file-saver": "^2.0.1",
-    "@types/normalize-wheel": "^1.0.0",
     "clone": "^2.1.2",
-    "file-saver": "^2.0.0",
-    "normalize-wheel": "^1.0.1"
+    "file-saver": "^2.0.0"
   },
   "peerDependencies": {
     "@jbrowse/core": "^2.0.0",
@@ -63,5 +61,5 @@
   "publishConfig": {
     "access": "public"
   },
-  "gitHead": "511048cb6965f0bf624c96de244e7fd47fce17d6"
+  "gitHead": "20f16ae5a56ae5e4806aaa373131e540b0b5b0fd"
 }