@jbrowse/plugin-data-management 3.7.0 → 4.0.1

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js

@@ -1,117 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = Category;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const ArrowDropDown_1 = __importDefault(require("@mui/icons-material/ArrowDropDown"));
-const ArrowRight_1 = __importDefault(require("@mui/icons-material/ArrowRight"));
-const MoreHoriz_1 = __importDefault(require("@mui/icons-material/MoreHoriz"));
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const util_1 = require("../util");
-function getAllSubcategories(node) {
-    const categoryIds = [];
-    if (node.type === 'category') {
-        for (const child of node.children) {
-            if (child.type === 'category') {
-                categoryIds.push(child.id, ...getAllSubcategories(child));
-            }
-        }
-    }
-    return categoryIds;
-}
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    contrastColor: {
-        color: theme.palette.tertiary.contrastText,
-    },
-    accordionText: {
-        margin: 'auto 0',
-        width: '100%',
-    },
-}));
-function Category({ isOpen, setOpen, data, }) {
-    const { classes } = useStyles();
-    const [menuOpen, setMenuOpen] = (0, react_1.useState)(false);
-    const { menuItems = [], name, model, id, tree } = data;
-    const currentNode = (0, util_1.treeToMap)(tree).get(id);
-    const subcategoryIds = currentNode ? getAllSubcategories(currentNode) : [];
-    const hasSubcategories = subcategoryIds.length > 0;
-    return ((0, jsx_runtime_1.jsx)("div", { className: classes.accordionText, onClick: () => {
-            if (!menuOpen) {
-                data.toggleCollapse(id);
-                setOpen(!isOpen);
-            }
-        }, children: (0, jsx_runtime_1.jsxs)(material_1.Typography, { "data-testid": `htsCategory-${name}`, children: [isOpen ? (0, jsx_runtime_1.jsx)(ArrowDropDown_1.default, {}) : (0, jsx_runtime_1.jsx)(ArrowRight_1.default, {}), name, (0, jsx_runtime_1.jsx)(ui_1.CascadingMenuButton, { menuItems: [
-                        {
-                            label: 'Add to selection',
-                            onClick: () => {
-                                const r = (0, util_1.treeToMap)(tree).get(id);
-                                model.addToSelection((0, util_1.getAllChildren)(r));
-                            },
-                            helpText: 'Add all tracks in this category to the current selection. This allows you to perform bulk operations on multiple tracks at once, such as configuring settings or exporting track configurations.',
-                        },
-                        {
-                            label: 'Remove from selection',
-                            onClick: () => {
-                                const r = (0, util_1.treeToMap)(tree).get(id);
-                                model.removeFromSelection((0, util_1.getAllChildren)(r));
-                            },
-                            helpText: 'Remove all tracks in this category from the current selection. Use this to deselect tracks that were previously added to your selection.',
-                        },
-                        {
-                            label: 'Show all',
-                            onClick: () => {
-                                var _a;
-                                for (const entry of ((_a = (0, util_1.treeToMap)(tree).get(id)) === null || _a === void 0 ? void 0 : _a.children) || []) {
-                                    if (entry.type === 'track') {
-                                        model.view.showTrack(entry.trackId);
-                                    }
-                                }
-                            },
-                            helpText: 'Display all tracks in this category on the current view. This is useful when you want to visualize multiple related tracks simultaneously to compare their data.',
-                        },
-                        {
-                            label: 'Hide all',
-                            onClick: () => {
-                                var _a;
-                                for (const entry of ((_a = (0, util_1.treeToMap)(tree).get(id)) === null || _a === void 0 ? void 0 : _a.children) || []) {
-                                    if (entry.type === 'track') {
-                                        model.view.hideTrack(entry.trackId);
-                                    }
-                                }
-                            },
-                            helpText: 'Hide all tracks in this category from the current view. This helps declutter your view by removing tracks you are not currently analyzing.',
-                        },
-                        ...(hasSubcategories
-                            ? [
-                                {
-                                    label: 'Collapse all subcategories',
-                                    onClick: () => {
-                                        for (const subcategoryId of subcategoryIds) {
-                                            if (!model.collapsed.get(subcategoryId)) {
-                                                model.toggleCategory(subcategoryId);
-                                            }
-                                        }
-                                    },
-                                    helpText: 'Collapse all nested subcategories within this category. This provides a cleaner, more compact view of the track hierarchy by hiding the detailed contents of subcategories.',
-                                },
-                                {
-                                    label: 'Expand all subcategories',
-                                    onClick: () => {
-                                        for (const subcategoryId of subcategoryIds) {
-                                            if (model.collapsed.get(subcategoryId)) {
-                                                model.toggleCategory(subcategoryId);
-                                            }
-                                        }
-                                    },
-                                    helpText: 'Expand all nested subcategories within this category. This reveals all tracks and subcategories at once, making it easier to browse and select tracks from the entire hierarchy.',
-                                },
-                            ]
-                            : []),
-                        ...menuItems,
-                    ], className: classes.contrastColor, stopPropagation: true, setOpen: setMenuOpen, children: (0, jsx_runtime_1.jsx)(MoreHoriz_1.default, {}) })] }) }));
-}

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.d.ts

@@ -1,10 +0,0 @@
-import type { NodeData } from '../util';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-export interface InfoArgs {
-    target: HTMLElement;
-    id: string;
-    conf: AnyConfigurationModel;
-}
-export default function TrackLabel({ data }: {
-    data: NodeData;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js

@@ -1,49 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = TrackLabel;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const configuration_1 = require("@jbrowse/core/configuration");
-const SanitizedHTML_1 = __importDefault(require("@jbrowse/core/ui/SanitizedHTML"));
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const util_1 = require("../util");
-const TrackLabelMenu_1 = __importDefault(require("./TrackLabelMenu"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    compactCheckbox: {
-        padding: 0,
-    },
-    checkboxLabel: {
-        marginRight: 0,
-        '&:hover': {
-            backgroundColor: theme.palette.action.selected,
-        },
-    },
-    selected: {
-        background: '#cccc',
-    },
-}));
-function TrackLabel({ data }) {
-    const { classes } = useStyles();
-    const { checked, conf, model, drawerPosition, id, trackId, name, selected, onChange, } = data;
-    const description = (0, configuration_1.readConfObject)(conf, 'description');
-    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Tooltip, { title: description + (selected ? ' (in selection)' : ''), placement: drawerPosition === 'left' ? 'right' : 'left', children: (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { className: classes.checkboxLabel, onClick: event => {
-                        if (event.ctrlKey || event.metaKey) {
-                            if (selected) {
-                                model.removeFromSelection([conf]);
-                            }
-                            else {
-                                model.addToSelection([conf]);
-                            }
-                            event.preventDefault();
-                        }
-                    }, control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { className: classes.compactCheckbox, checked: checked, onChange: () => {
-                            onChange(trackId);
-                        }, disabled: (0, util_1.isUnsupported)(name), slotProps: {
-                            input: {
-                                'data-testid': `htsTrackEntry-${id}`,
-                            },
-                        } }), label: (0, jsx_runtime_1.jsx)("div", { "data-testid": `htsTrackLabel-${id}`, className: selected ? classes.selected : undefined, children: (0, jsx_runtime_1.jsx)(SanitizedHTML_1.default, { html: name }) }) }) }), (0, jsx_runtime_1.jsx)(TrackLabelMenu_1.default, { model: model, trackId: trackId, id: id, conf: conf })] }));
-}

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabelMenu.js

@@ -1,56 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const CascadingMenuButton_1 = __importDefault(require("@jbrowse/core/ui/CascadingMenuButton"));
-const util_1 = require("@jbrowse/core/util");
-const MoreHoriz_1 = __importDefault(require("@mui/icons-material/MoreHoriz"));
-const Star_1 = __importDefault(require("@mui/icons-material/Star"));
-const StarBorderOutlined_1 = __importDefault(require("@mui/icons-material/StarBorderOutlined"));
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    cascadingStyle: {
-        padding: 0,
-    },
-});
-const TrackLabelMenu = function ({ id, trackId, stopPropagation, model, setOpen, conf, }) {
-    var _a, _b;
-    const { classes } = useStyles();
-    return ((0, jsx_runtime_1.jsx)(CascadingMenuButton_1.default, { className: classes.cascadingStyle, stopPropagation: stopPropagation, setOpen: setOpen, "data-testid": `htsTrackEntryMenu-${id}`, menuItems: [
-            ...(((_b = (_a = (0, util_1.getSession)(model)).getTrackActionMenuItems) === null || _b === void 0 ? void 0 : _b.call(_a, conf)) || []),
-            model.isFavorite(trackId)
-                ? {
-                    label: 'Remove from favorites',
-                    onClick: () => {
-                        model.removeFromFavorites(trackId);
-                    },
-                    icon: StarBorderOutlined_1.default,
-                }
-                : {
-                    label: 'Add to favorites',
-                    onClick: () => {
-                        model.addToFavorites(trackId);
-                    },
-                    icon: Star_1.default,
-                },
-            {
-                label: 'Add to selection',
-                onClick: () => {
-                    model.addToSelection([conf]);
-                },
-            },
-            ...(model.isSelected(conf)
-                ? [
-                    {
-                        label: 'Remove from selection',
-                        onClick: () => {
-                            model.removeFromSelection([conf]);
-                        },
-                    },
-                ]
-                : []),
-        ], children: (0, jsx_runtime_1.jsx)(MoreHoriz_1.default, {}) }));
-};
-exports.default = TrackLabelMenu;

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.d.ts

@@ -1,9 +0,0 @@
-import type { NodeData } from '../util';
-export default function Node({ data, isOpen, style, setOpen, }: {
-    data: NodeData;
-    isOpen: boolean;
-    style?: {
-        height: number;
-    };
-    setOpen: (arg: boolean) => void;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js

@@ -1,42 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = Node;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const mui_1 = require("tss-react/mui");
-const TrackCategory_1 = __importDefault(require("./TrackCategory"));
-const TrackLabel_1 = __importDefault(require("./TrackLabel"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    accordionBase: {
-        display: 'flex',
-    },
-    accordionCard: {
-        padding: 3,
-        cursor: 'pointer',
-        display: 'flex',
-    },
-    nestingLevelMarker: {
-        position: 'absolute',
-        borderLeft: '1.5px solid #555',
-    },
-    accordionColor: {
-        background: theme.palette.tertiary.main,
-        color: theme.palette.tertiary.contrastText,
-        width: '100%',
-        display: 'flex',
-        paddingLeft: 5,
-    },
-}));
-function Node({ data, isOpen, style, setOpen, }) {
-    const { isLeaf, nestingLevel } = data;
-    const { classes } = useStyles();
-    const width = 10;
-    const marginLeft = nestingLevel * width + (isLeaf ? width : 0);
-    return ((0, jsx_runtime_1.jsxs)("div", { style: style, className: !isLeaf ? classes.accordionBase : undefined, children: [new Array(nestingLevel).fill(0).map((_, idx) => ((0, jsx_runtime_1.jsx)("div", { style: { left: idx * width + 4, height: style === null || style === void 0 ? void 0 : style.height }, className: classes.nestingLevelMarker }, `mark-${idx}`))), (0, jsx_runtime_1.jsx)("div", { className: !isLeaf ? classes.accordionCard : undefined, style: {
-                    marginLeft,
-                    whiteSpace: 'nowrap',
-                    width: '100%',
-                }, children: (0, jsx_runtime_1.jsx)("div", { className: !isLeaf ? classes.accordionColor : undefined, children: !isLeaf ? ((0, jsx_runtime_1.jsx)(TrackCategory_1.default, { isOpen: isOpen, data: data, setOpen: setOpen })) : ((0, jsx_runtime_1.jsx)(TrackLabel_1.default, { data: data })) }) })] }));
-}

package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts

@@ -1,23 +0,0 @@
-import type { TreeNode } from '../generateHierarchy';
-import type { HierarchicalTrackSelectorModel } from '../model';
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { MenuItem } from '@jbrowse/core/ui';
-export interface NodeData {
-    nestingLevel: number;
-    checked: boolean;
-    conf: AnyConfigurationModel;
-    drawerPosition: unknown;
-    id: string;
-    trackId: string;
-    isLeaf: boolean;
-    name: string;
-    onChange: (trackId: string) => void;
-    toggleCollapse: (arg: string) => void;
-    tree: TreeNode;
-    selected: boolean;
-    menuItems?: MenuItem[];
-    model: HierarchicalTrackSelectorModel;
-}
-export declare function getAllChildren(subtree?: TreeNode): AnyConfigurationModel[];
-export declare function treeToMap(tree: TreeNode, map?: Map<string, TreeNode>): Map<string, TreeNode>;
-export declare function isUnsupported(name?: string): boolean;

package/dist/HierarchicalTrackSelectorWidget/components/util.js

@@ -1,22 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.getAllChildren = getAllChildren;
-exports.treeToMap = treeToMap;
-exports.isUnsupported = isUnsupported;
-function getAllChildren(subtree) {
-    return (subtree === null || subtree === void 0 ? void 0 : subtree.type) === 'category'
-        ? subtree.children.flatMap(t => t.type === 'category' ? getAllChildren(t) : t.conf)
-        : [];
-}
-function treeToMap(tree, map = new Map()) {
-    if (tree.id && tree.children.length) {
-        map.set(tree.id, tree);
-    }
-    for (const node of tree.children) {
-        treeToMap(node, map);
-    }
-    return map;
-}
-function isUnsupported(name = '') {
-    return name.endsWith('(Unsupported)') || name.endsWith('(Unknown)');
-}

package/dist/HierarchicalTrackSelectorWidget/configSchema.d.ts

@@ -1,2 +0,0 @@
-declare const configSchema: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{}, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, undefined>>;
-export default configSchema;

package/dist/HierarchicalTrackSelectorWidget/configSchema.js

@@ -1,5 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const configuration_1 = require("@jbrowse/core/configuration");
-const configSchema = (0, configuration_1.ConfigurationSchema)('HierarchicalTrackSelectorWidget', {});
-exports.default = configSchema;

package/dist/HierarchicalTrackSelectorWidget/facetedModel.d.ts

@@ -1,82 +0,0 @@
-import type { Instance } from 'mobx-state-tree';
-export declare function facetedStateTreeF(): import("mobx-state-tree").IModelType<{
-    filterText: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    showSparse: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    showFilters: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    showOptions: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<boolean>, [undefined]>;
-    panelWidth: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>;
-}, {
-    visible: Record<string, boolean>;
-    useShoppingCart: boolean;
-    filters: import("mobx").ObservableMap<string, string[]>;
-} & {
-    setFilter(key: string, value: string[]): void;
-    setPanelWidth(width: number): number;
-    setUseShoppingCart(f: boolean): void;
-    setFilterText(str: string): void;
-    setShowSparse(f: boolean): void;
-    setShowOptions(f: boolean): void;
-    setShowFilters(f: boolean): void;
-} & {
-    readonly allTrackConfigurations: ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
-} & {
-    readonly rows: {
-        readonly id: string;
-        readonly conf: {
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                    [x: string]: any;
-                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
-        readonly name: string;
-        readonly category: string;
-        readonly adapter: string;
-        readonly description: string;
-        readonly metadata: Record<string, unknown>;
-    }[];
-} & {
-    readonly filteredNonMetadataKeys: string[] | readonly ["category", "adapter", "description"];
-    readonly metadataKeys: string[];
-    readonly filteredMetadataKeys: string[];
-    readonly fields: string[];
-    readonly filteredRows: {
-        readonly id: string;
-        readonly conf: {
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-            setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                [x: string]: any;
-            } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-                setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-                    [x: string]: any;
-                } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-            } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-        } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>;
-        readonly name: string;
-        readonly category: string;
-        readonly adapter: string;
-        readonly description: string;
-        readonly metadata: Record<string, unknown>;
-    }[];
-} & {
-    setVisible(args: Record<string, boolean>): void;
-    afterAttach(): void;
-}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export type FacetedStateModel = ReturnType<typeof facetedStateTreeF>;
-export type FacetedModel = Instance<FacetedStateModel>;
-export type FacetedRow = FacetedModel['filteredRows'][0];

package/dist/HierarchicalTrackSelectorWidget/facetedModel.js

@@ -1,114 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.facetedStateTreeF = facetedStateTreeF;
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-const mobx_1 = require("mobx");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const util_2 = require("./components/faceted/util");
-const facetedUtil_1 = require("./facetedUtil");
-const util_3 = require("./util");
-const nonMetadataKeys = ['category', 'adapter', 'description'];
-function facetedStateTreeF() {
-    return mobx_state_tree_1.types
-        .model('FacetedModel', {
-        filterText: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.string, ''),
-        showSparse: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => (0, util_1.localStorageGetBoolean)('facet-showSparse', false)),
-        showFilters: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => (0, util_1.localStorageGetBoolean)('facet-showFilters', true)),
-        showOptions: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.boolean, () => (0, util_1.localStorageGetBoolean)('facet-showTableOptions', false)),
-        panelWidth: mobx_state_tree_1.types.optional(mobx_state_tree_1.types.number, () => (0, util_1.localStorageGetNumber)('facet-panelWidth', 400)),
-    })
-        .volatile(() => ({
-        visible: {},
-        useShoppingCart: false,
-        filters: mobx_1.observable.map(),
-    }))
-        .actions(self => ({
-        setFilter(key, value) {
-            self.filters.set(key, value);
-        },
-        setPanelWidth(width) {
-            self.panelWidth = width;
-            return self.panelWidth;
-        },
-        setUseShoppingCart(f) {
-            self.useShoppingCart = f;
-        },
-        setFilterText(str) {
-            self.filterText = str;
-        },
-        setShowSparse(f) {
-            self.showSparse = f;
-        },
-        setShowOptions(f) {
-            self.showOptions = f;
-        },
-        setShowFilters(f) {
-            self.showFilters = f;
-        },
-    }))
-        .views(self => ({
-        get allTrackConfigurations() {
-            return (0, mobx_state_tree_1.getParent)(self).allTrackConfigurations;
-        },
-    }))
-        .views(self => ({
-        get rows() {
-            const session = (0, util_1.getSession)(self);
-            const { allTrackConfigurations, filterText } = self;
-            return allTrackConfigurations
-                .filter(conf => (0, util_3.matches)(filterText, conf, session))
-                .map(track => {
-                var _a, _b;
-                return ({
-                    id: track.trackId,
-                    conf: track,
-                    name: (0, tracks_1.getTrackName)(track, session),
-                    category: (_a = (0, configuration_1.readConfObject)(track, 'category')) === null || _a === void 0 ? void 0 : _a.join(', '),
-                    adapter: (_b = (0, configuration_1.readConfObject)(track, 'adapter')) === null || _b === void 0 ? void 0 : _b.type,
-                    description: (0, configuration_1.readConfObject)(track, 'description'),
-                    metadata: (0, configuration_1.readConfObject)(track, 'metadata'),
-                });
-            });
-        },
-    }))
-        .views(self => ({
-        get filteredNonMetadataKeys() {
-            return self.showSparse
-                ? nonMetadataKeys
-                : (0, facetedUtil_1.findNonSparseKeys)(nonMetadataKeys, self.rows, (r, f) => r[f]);
-        },
-        get metadataKeys() {
-            return [...new Set(self.rows.flatMap(row => (0, facetedUtil_1.getRootKeys)(row.metadata)))];
-        },
-        get filteredMetadataKeys() {
-            return self.showSparse
-                ? this.metadataKeys
-                : (0, facetedUtil_1.findNonSparseKeys)(this.metadataKeys, self.rows, (r, f) => r.metadata[f]);
-        },
-        get fields() {
-            return [
-                'name',
-                ...this.filteredNonMetadataKeys,
-                ...this.filteredMetadataKeys.map(m => `metadata.${m}`),
-            ];
-        },
-        get filteredRows() {
-            const arrFilters = [...self.filters.entries()]
-                .filter(f => f[1].length > 0)
-                .map(([key, val]) => [key, new Set(val)]);
-            return self.rows.filter(row => arrFilters.every(([key, val]) => val.has((0, util_2.getRowStr)(key, row))));
-        },
-    }))
-        .actions(self => ({
-        setVisible(args) {
-            self.visible = args;
-        },
-        afterAttach() {
-            (0, mobx_state_tree_1.addDisposer)(self, (0, mobx_1.autorun)(() => {
-                this.setVisible(Object.fromEntries(self.fields.map(c => [c, true])));
-            }));
-        },
-    }));
-}

package/dist/HierarchicalTrackSelectorWidget/facetedUtil.d.ts

@@ -1,2 +0,0 @@
-export declare function findNonSparseKeys(keys: readonly string[], rows: Record<string, unknown>[], cb: (row: Record<string, unknown>, f: string) => unknown): string[];
-export declare function getRootKeys(obj: Record<string, unknown>): string[];

package/dist/HierarchicalTrackSelectorWidget/facetedUtil.js

@@ -1,12 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.findNonSparseKeys = findNonSparseKeys;
-exports.getRootKeys = getRootKeys;
-function findNonSparseKeys(keys, rows, cb) {
-    return keys.filter(f => rows.map(r => cb(r, f)).filter(f => !!f).length > 5);
-}
-function getRootKeys(obj) {
-    return Object.entries(obj)
-        .map(([key, val]) => (typeof val === 'string' ? key : ''))
-        .filter(f => !!f);
-}

package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts

@@ -1,18 +0,0 @@
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-export declare function filterTracks(tracks: AnyConfigurationModel[], self: {
-    view?: {
-        type: string;
-        trackSelectorAnyOverlap?: boolean;
-    };
-    assemblyNames: string[];
-}): ({
-    [x: string]: any;
-} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-    setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-        [x: string]: any;
-    } & import("mobx-state-tree/dist/internal").NonEmptyObject & {
-        setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({
-            [x: string]: any;
-        } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-    } & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>);
-} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];

package/dist/HierarchicalTrackSelectorWidget/filterTracks.js

@@ -1,31 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.filterTracks = filterTracks;
-const configuration_1 = require("@jbrowse/core/configuration");
-const util_1 = require("@jbrowse/core/util");
-const util_2 = require("./util");
-function filterTracks(tracks, self) {
-    const { assemblyManager } = (0, util_1.getSession)(self);
-    const { pluginManager } = (0, util_1.getEnv)(self);
-    const { view } = self;
-    if (!view) {
-        return [];
-    }
-    const viewAssemblyNames = self.assemblyNames
-        .map(a => assemblyManager.getCanonicalAssemblyName(a))
-        .filter(util_1.notEmpty);
-    return tracks
-        .filter(c => {
-        const trackConfigAssemblyNames = (0, configuration_1.readConfObject)(c, 'assemblyNames');
-        const trackCanonicalAssemblyNames = trackConfigAssemblyNames === null || trackConfigAssemblyNames === void 0 ? void 0 : trackConfigAssemblyNames.map(name => assemblyManager.getCanonicalAssemblyName(name)).filter(util_1.notEmpty);
-        return view.trackSelectorAnyOverlap
-            ? (0, util_2.hasAnyOverlap)(trackCanonicalAssemblyNames, viewAssemblyNames)
-            : (0, util_2.hasAllOverlap)(trackCanonicalAssemblyNames, viewAssemblyNames);
-    })
-        .filter(c => {
-        const { displayTypes } = pluginManager.getViewType(view.type);
-        const compatDisplays = displayTypes.map(d => d.name);
-        const trackDisplays = c.displays.map((d) => d.type);
-        return (0, util_2.hasAnyOverlap)(compatDisplays, trackDisplays);
-    });
-}

package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts

@@ -1,36 +0,0 @@
-import type { AnyConfigurationModel } from '@jbrowse/core/configuration';
-import type { MenuItem } from '@jbrowse/core/ui';
-export interface TreeTrackNode {
-    name: string;
-    id: string;
-    trackId: string;
-    conf: AnyConfigurationModel;
-    checked: boolean;
-    children: TreeNode[];
-    type: 'track';
-}
-export interface TreeCategoryNode {
-    name: string;
-    id: string;
-    isOpenByDefault: boolean;
-    children: TreeNode[];
-    type: 'category';
-}
-export type TreeNode = TreeTrackNode | TreeCategoryNode;
-export declare function generateHierarchy({ model, trackConfs, extra, noCategories, menuItems, }: {
-    model: {
-        filterText: string;
-        activeSortTrackNames: boolean;
-        activeSortCategories: boolean;
-        collapsed: Map<string | number, boolean>;
-        view?: {
-            tracks: {
-                configuration: AnyConfigurationModel;
-            }[];
-        };
-    };
-    noCategories?: boolean;
-    menuItems?: MenuItem[];
-    trackConfs: AnyConfigurationModel[];
-    extra?: string;
-}): TreeNode[];