@jbrowse/plugin-data-management 3.7.0 → 4.0.0

package/dist/AddConnectionWidget/index.js

@@ -1,55 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = AddConnectionWidgetF;
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const model_1 = __importDefault(require("./model"));
-const configSchema = (0, configuration_1.ConfigurationSchema)('AddConnectionWidget', {});
-function AddConnectionWidgetF(pluginManager) {
-    pluginManager.addWidgetType(() => {
-        return new pluggableElementTypes_1.WidgetType({
-            name: 'AddConnectionWidget',
-            heading: 'Add a connection',
-            configSchema,
-            stateModel: model_1.default,
-            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/AddConnectionWidget')))),
-        });
-    });
-}

package/dist/AddConnectionWidget/model.d.ts

@@ -1,5 +0,0 @@
-declare const _default: import("mobx-state-tree").IModelType<{
-    id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>;
-    type: import("mobx-state-tree").ISimpleType<"AddConnectionWidget">;
-}, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
-export default _default;

package/dist/AddConnectionWidget/model.js

@@ -1,8 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const mst_1 = require("@jbrowse/core/util/types/mst");
-const mobx_state_tree_1 = require("mobx-state-tree");
-exports.default = mobx_state_tree_1.types.model('AddConnectionModel', {
-    id: mst_1.ElementId,
-    type: mobx_state_tree_1.types.literal('AddConnectionWidget'),
-});

package/dist/AddTrackWidget/components/AddTrackStatusMessage.d.ts

@@ -1,9 +0,0 @@
-export default function StatusMessage({ trackAdapter, trackType, }: {
-    trackAdapter: {
-        type: string;
-        subadapter?: {
-            type: string;
-        };
-    };
-    trackType: string;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/AddTrackWidget/components/AddTrackStatusMessage.js

@@ -1,16 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = StatusMessage;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    spacing: {
-        marginBottom: theme.spacing(3),
-    },
-}));
-function StatusMessage({ trackAdapter, trackType, }) {
-    const { classes } = useStyles();
-    const { type, subadapter } = trackAdapter;
-    return type === 'SNPCoverageAdapter' ? ((0, jsx_runtime_1.jsxs)(material_1.Typography, { className: classes.spacing, children: ["Selected ", (0, jsx_runtime_1.jsx)("code", { children: trackType }), ". Using adapter ", (0, jsx_runtime_1.jsx)("code", { children: type }), " with subadapter ", (0, jsx_runtime_1.jsx)("code", { children: subadapter === null || subadapter === void 0 ? void 0 : subadapter.type }), ". Please enter a track name and, if necessary, update the track type."] })) : ((0, jsx_runtime_1.jsxs)(material_1.Typography, { className: classes.spacing, children: ["Using adapter ", (0, jsx_runtime_1.jsx)("code", { children: type }), " and guessing track type", ' ', (0, jsx_runtime_1.jsx)("code", { children: trackType }), ". Please enter a track name and, if necessary, update the track type."] }));
-}

package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.d.ts

@@ -1,4 +0,0 @@
-import type { AddTrackModel } from '../model';
-export default function UnknownAdapterPrompt({ model, }: {
-    model: AddTrackModel;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/AddTrackWidget/components/AddTrackUnknownAdapterPrompt.js

@@ -1,20 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = UnknownAdapterPrompt;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const TrackAdapterSelector_1 = __importDefault(require("./TrackAdapterSelector"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    spacing: {
-        marginBottom: theme.spacing(3),
-    },
-}));
-function UnknownAdapterPrompt({ model, }) {
-    const { classes } = useStyles();
-    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { className: classes.spacing, children: ["JBrowse was not able to guess the adapter type for this data, but it may be in the list below. If not, you can", ' ', (0, jsx_runtime_1.jsx)(ui_1.ExternalLink, { href: "https://github.com/GMOD/jbrowse-components/releases", children: "check for new releases" }), ' ', "of JBrowse to see if they support this data type or", ' ', (0, jsx_runtime_1.jsx)(ui_1.ExternalLink, { href: "https://github.com/GMOD/jbrowse-components/issues/new", children: "file an issue" }), ' ', "and add a feature request for this data type."] }), (0, jsx_runtime_1.jsx)(TrackAdapterSelector_1.default, { model: model })] }));
-}

package/dist/AddTrackWidget/components/AddTrackWidget.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '../model';
-declare const AddTrackSelector: ({ model, }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default AddTrackSelector;

package/dist/AddTrackWidget/components/AddTrackWidget.js

@@ -1,28 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const DefaultAddTrackWorkflow_1 = __importDefault(require("./DefaultAddTrackWorkflow"));
-const PasteConfigWorkflow_1 = __importDefault(require("./PasteConfigWorkflow"));
-const AddTrackSelector = (0, mobx_react_1.observer)(function ({ model, }) {
-    const [val, setVal] = (0, react_1.useState)('Default add track workflow');
-    const ComponentMap = {
-        'Default add track workflow': DefaultAddTrackWorkflow_1.default,
-        'Add track JSON': PasteConfigWorkflow_1.default,
-        ...Object.fromEntries((0, util_1.getEnv)(model)
-            .pluginManager.getAddTrackWorkflowElements()
-            .map(w => [w.name, w.ReactComponent])),
-    };
-    const val2 = ComponentMap[val] ? val : 'Default add track workflow';
-    const Component = ComponentMap[val2];
-    return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)(material_1.FormControl, { children: [(0, jsx_runtime_1.jsx)(material_1.Select, { value: val2, onChange: event => {
-                            setVal(event.target.value);
-                        }, children: Object.keys(ComponentMap).map(e => ((0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: e, children: e }, e))) }), (0, jsx_runtime_1.jsx)(material_1.FormHelperText, { children: "Type of add track workflow" })] }), (0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(Component, { model: model }) })] }));
-});
-exports.default = AddTrackSelector;

package/dist/AddTrackWidget/components/ConfirmTrack.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '../model';
-declare const ConfirmTrack: ({ model, }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default ConfirmTrack;

package/dist/AddTrackWidget/components/ConfirmTrack.js

@@ -1,73 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const tracks_1 = require("@jbrowse/core/util/tracks");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const AddTrackStatusMessage_1 = __importDefault(require("./AddTrackStatusMessage"));
-const AddTrackUnknownAdapterPrompt_1 = __importDefault(require("./AddTrackUnknownAdapterPrompt"));
-const TextIndexingConfig_1 = __importDefault(require("./TextIndexingConfig"));
-const TrackAdapterSelector_1 = __importDefault(require("./TrackAdapterSelector"));
-const TrackTypeSelector_1 = __importDefault(require("./TrackTypeSelector"));
-const Unsupported_1 = __importDefault(require("./Unsupported"));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    spacing: {
-        marginBottom: theme.spacing(3),
-    },
-}));
-const ConfirmTrack = (0, mobx_react_1.observer)(function ConfirmTrack({ model, }) {
-    const { classes } = useStyles();
-    const [check, setCheck] = (0, react_1.useState)(true);
-    const session = (0, util_1.getSession)(model);
-    const { trackName, unsupported, trackAdapter, trackType, warningMessage, adapterHint, } = model;
-    (0, react_1.useEffect)(() => {
-        if (adapterHint === '' && trackAdapter) {
-            model.setAdapterHint(trackAdapter.type);
-        }
-    }, [adapterHint, trackAdapter, trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type, model]);
-    if (unsupported) {
-        return (0, jsx_runtime_1.jsx)(Unsupported_1.default, {});
-    }
-    else if ((trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) === tracks_1.UNKNOWN) {
-        return (0, jsx_runtime_1.jsx)(AddTrackUnknownAdapterPrompt_1.default, { model: model });
-    }
-    else if (!(trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type)) {
-        return (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Could not recognize this data type." });
-    }
-    else {
-        const supportedForIndexing = (0, util_1.isSupportedIndexingAdapter)(trackAdapter.type);
-        const { pluginManager } = (0, util_1.getEnv)(model);
-        const Component = pluginManager.evaluateExtensionPoint('Core-addTrackComponent', ({ model }) => ((0, jsx_runtime_1.jsx)(ui_1.AssemblySelector, { session: session, helperText: "Select assembly to add track to", selected: model.assembly, onChange: asm => {
-                model.setAssembly(asm);
-            }, TextFieldProps: {
-                fullWidth: true,
-                SelectProps: {
-                    SelectDisplayProps: {
-                        'data-testid': 'assemblyNameSelect',
-                    },
-                },
-            } })), { model });
-        return ((0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(AddTrackStatusMessage_1.default, { trackAdapter: trackAdapter, trackType: trackType }), warningMessage ? ((0, jsx_runtime_1.jsx)(material_1.Typography, { color: "warning", children: warningMessage })) : null, (0, jsx_runtime_1.jsx)(material_1.TextField, { className: classes.spacing, label: "trackName", helperText: "A name for this track", fullWidth: true, value: trackName, onChange: event => {
-                        model.setTrackName(event.target.value);
-                    }, slotProps: {
-                        htmlInput: {
-                            'data-testid': 'trackNameInput',
-                        },
-                    } }), (0, jsx_runtime_1.jsxs)("div", { style: {
-                        display: 'flex',
-                        flexDirection: 'column',
-                        gap: 10,
-                    }, children: [(0, jsx_runtime_1.jsx)(TrackAdapterSelector_1.default, { model: model }), (0, jsx_runtime_1.jsx)(TrackTypeSelector_1.default, { model: model }), (0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: null, children: (0, jsx_runtime_1.jsx)(Component, { model: model }) })] }), util_1.isElectron && supportedForIndexing && ((0, jsx_runtime_1.jsx)(material_1.FormControl, { children: (0, jsx_runtime_1.jsx)(material_1.FormControlLabel, { label: "Index track for text searching?", control: (0, jsx_runtime_1.jsx)(material_1.Checkbox, { checked: check, onChange: e => {
-                                setCheck(e.target.checked);
-                                model.setTextIndexTrack(e.target.checked);
-                            } }) }) })), util_1.isElectron && check && supportedForIndexing ? ((0, jsx_runtime_1.jsx)(TextIndexingConfig_1.default, { model: model })) : null] }));
-    }
-});
-exports.default = ConfirmTrack;

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '../model';
-declare const DefaultAddTrackWorkflow: ({ model, }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default DefaultAddTrackWorkflow;

package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js

@@ -1,74 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const ConfirmTrack_1 = __importDefault(require("./ConfirmTrack"));
-const TrackSourceSelect_1 = __importDefault(require("./TrackSourceSelect"));
-const doSubmit_1 = require("./doSubmit");
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    root: {
-        marginTop: theme.spacing(1),
-    },
-    stepper: {
-        backgroundColor: theme.palette.background.default,
-    },
-    button: {
-        marginRight: theme.spacing(1),
-    },
-    actionsContainer: {
-        marginTop: theme.spacing(10),
-        marginBottom: theme.spacing(2),
-    },
-    alertContainer: {
-        padding: `${theme.spacing(2)}px 0px ${theme.spacing(2)}px 0px`,
-    },
-}));
-const steps = ['Enter track data', 'Confirm track type'];
-const DefaultAddTrackWorkflow = (0, mobx_react_1.observer)(function ({ model, }) {
-    const [activeStep, setActiveStep] = (0, react_1.useState)(0);
-    const { classes } = useStyles();
-    const { assembly, trackAdapter, trackData, trackName, trackType } = model;
-    function getStepContent(step) {
-        switch (step) {
-            case 0:
-                return (0, jsx_runtime_1.jsx)(TrackSourceSelect_1.default, { model: model });
-            case 1:
-                return (0, jsx_runtime_1.jsx)(ConfirmTrack_1.default, { model: model });
-            default:
-                return (0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Unknown step" });
-        }
-    }
-    function isNextDisabled() {
-        switch (activeStep) {
-            case 0:
-                return !trackData;
-            case 1:
-                return !(trackName && trackType && (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) && assembly);
-            default:
-                return true;
-        }
-    }
-    return ((0, jsx_runtime_1.jsx)("div", { className: classes.root, children: (0, jsx_runtime_1.jsx)(material_1.Stepper, { className: classes.stepper, activeStep: activeStep, orientation: "vertical", children: steps.map((label, idx) => ((0, jsx_runtime_1.jsxs)(material_1.Step, { children: [(0, jsx_runtime_1.jsx)(material_1.StepLabel, { children: label }), (0, jsx_runtime_1.jsxs)(material_1.StepContent, { children: [getStepContent(idx), (0, jsx_runtime_1.jsxs)("div", { className: classes.actionsContainer, children: [(0, jsx_runtime_1.jsx)(material_1.Button, { disabled: activeStep === 0, className: classes.button, onClick: () => {
-                                            setActiveStep(activeStep - 1);
-                                        }, "data-testid": "addTrackBackButton", children: "Back" }), (0, jsx_runtime_1.jsx)(material_1.Button, { disabled: isNextDisabled(), variant: "contained", color: "primary", onClick: () => {
-                                            if (activeStep !== steps.length - 1) {
-                                                setActiveStep(activeStep + 1);
-                                            }
-                                            else {
-                                                try {
-                                                    (0, doSubmit_1.doSubmit)({ model });
-                                                }
-                                                catch (e) {
-                                                    (0, util_1.getSession)(model).notifyError(`${e}`, e);
-                                                }
-                                            }
-                                        }, className: classes.button, "data-testid": "addTrackNextButton", children: activeStep === steps.length - 1 ? 'Add' : 'Next' })] })] })] }, label))) }) }));
-});
-exports.default = DefaultAddTrackWorkflow;

package/dist/AddTrackWidget/components/PasteConfigWorkflow.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '../model';
-declare const PasteConfigAddTrackWorkflow: ({ model, }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default PasteConfigAddTrackWorkflow;

package/dist/AddTrackWidget/components/PasteConfigWorkflow.js

@@ -1,53 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_1 = require("mobx");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    textbox: {
-        width: '100%',
-    },
-    submit: {
-        marginTop: 25,
-        marginBottom: 100,
-        display: 'block',
-    },
-});
-const PasteConfigAddTrackWorkflow = (0, mobx_react_1.observer)(function ({ model, }) {
-    const { classes } = useStyles();
-    const [val, setVal] = (0, react_1.useState)('');
-    const [error, setError] = (0, react_1.useState)();
-    return ((0, jsx_runtime_1.jsxs)("div", { children: [error ? (0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error }) : null, (0, jsx_runtime_1.jsx)(material_1.TextField, { multiline: true, rows: 10, value: val, placeholder: "Paste track config or array of track configs in JSON format", variant: "outlined", className: classes.textbox, onChange: event => {
-                    setVal(event.target.value);
-                } }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", className: classes.submit, onClick: () => {
-                    try {
-                        setError(undefined);
-                        const session = (0, util_1.getSession)(model);
-                        const conf = JSON.parse(val);
-                        const confs = Array.isArray(conf) ? conf : [conf];
-                        if ((0, util_1.isSessionWithAddTracks)(session) &&
-                            (0, util_1.isSessionModelWithWidgets)(session)) {
-                            (0, mobx_1.transaction)(() => {
-                                for (const c of confs) {
-                                    session.addTrackConf(c);
-                                }
-                                for (const c of confs) {
-                                    model.view.showTrack(c.trackId);
-                                }
-                                model.clearData();
-                            });
-                            session.hideWidget(model);
-                        }
-                    }
-                    catch (e) {
-                        console.error(e);
-                        setError(e);
-                    }
-                }, children: "Submit" })] }));
-});
-exports.default = PasteConfigAddTrackWorkflow;

package/dist/AddTrackWidget/components/TextIndexingConfig.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '../model';
-declare const TextIndexingConfig: ({ model, }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TextIndexingConfig;

package/dist/AddTrackWidget/components/TextIndexingConfig.js

@@ -1,76 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const Add_1 = __importDefault(require("@mui/icons-material/Add"));
-const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    paper: {
-        display: 'flex',
-        flexDirection: 'column',
-        padding: theme.spacing(1),
-    },
-    card: {
-        marginTop: theme.spacing(1),
-    },
-}));
-const TextIndexingConfig = (0, mobx_react_1.observer)(function ({ model, }) {
-    const { classes } = useStyles();
-    const [value1, setValue1] = (0, react_1.useState)('');
-    const [value2, setValue2] = (0, react_1.useState)('');
-    const [attributes, setAttributes] = (0, react_1.useState)(['Name', 'ID']);
-    const [exclude, setExclude] = (0, react_1.useState)(['CDS', 'exon']);
-    const sections = [
-        {
-            label: 'Indexing attributes',
-            values: attributes,
-        },
-        {
-            label: 'Feature types to exclude',
-            values: exclude,
-        },
-    ];
-    (0, react_1.useEffect)(() => {
-        model.setTextIndexingConf({ attributes, exclude });
-    }, [model, attributes, exclude]);
-    return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { className: classes.paper, children: [(0, jsx_runtime_1.jsx)(material_1.InputLabel, { children: "Indexing configuration" }), sections.map((section, index) => ((0, jsx_runtime_1.jsx)(material_1.Card, { raised: true, className: classes.card, children: (0, jsx_runtime_1.jsxs)(material_1.CardContent, { children: [(0, jsx_runtime_1.jsx)(material_1.InputLabel, { children: section.label }), (0, jsx_runtime_1.jsxs)(material_1.List, { disablePadding: true, children: [section.values.map((val, idx) => ((0, jsx_runtime_1.jsx)(material_1.ListItem, { disableGutters: true, children: (0, jsx_runtime_1.jsx)(material_1.TextField, { value: val, slotProps: {
-                                            input: {
-                                                endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
-                                                            const newAttr = section.values.filter((_, i) => i !== idx);
-                                                            if (index === 0) {
-                                                                setAttributes(newAttr);
-                                                            }
-                                                            else {
-                                                                setExclude(newAttr);
-                                                            }
-                                                        }, children: (0, jsx_runtime_1.jsx)(Delete_1.default, {}) }) })),
-                                            },
-                                        } }) }, `${val}-${idx}`))), (0, jsx_runtime_1.jsx)(material_1.ListItem, { disableGutters: true, children: (0, jsx_runtime_1.jsx)(material_1.TextField, { value: index === 0 ? value1 : value2, placeholder: "add new", onChange: event => {
-                                            if (index === 0) {
-                                                setValue1(event.target.value);
-                                            }
-                                            else {
-                                                setValue2(event.target.value);
-                                            }
-                                        }, slotProps: {
-                                            input: {
-                                                endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
-                                                            if (index === 0) {
-                                                                setAttributes([...attributes, value1]);
-                                                                setValue1('');
-                                                            }
-                                                            else {
-                                                                setExclude([...exclude, value2]);
-                                                                setValue2('');
-                                                            }
-                                                        }, disabled: index === 0 ? value1 === '' : value2 === '', "data-testid": "stringArrayAdd-Feat", children: (0, jsx_runtime_1.jsx)(Add_1.default, {}) }) })),
-                                            },
-                                        } }) })] })] }) }, section.label)))] }));
-});
-exports.default = TextIndexingConfig;

package/dist/AddTrackWidget/components/TrackAdapterSelector.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '../model';
-declare const TrackAdapterSelector: ({ model }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TrackAdapterSelector;

package/dist/AddTrackWidget/components/TrackAdapterSelector.js

@@ -1,26 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const util_2 = require("./util");
-const TrackAdapterSelector = (0, mobx_react_1.observer)(({ model }) => {
-    const { trackAdapter } = model;
-    const { pluginManager } = (0, util_1.getEnv)(model);
-    return ((0, jsx_runtime_1.jsx)(material_1.TextField, { value: (trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type) !== 'UNKNOWN' ? trackAdapter === null || trackAdapter === void 0 ? void 0 : trackAdapter.type : '', label: "Adapter type", variant: "outlined", select: true, fullWidth: true, onChange: event => {
-            model.setAdapterHint(event.target.value);
-        }, slotProps: {
-            select: {
-                SelectDisplayProps: {
-                    'data-testid': 'adapterTypeSelect',
-                },
-            },
-        }, children: Object.entries((0, util_2.categorizeAdapters)(pluginManager
-            .getAdapterElements()
-            .filter(e => { var _a; return !((_a = e.adapterMetadata) === null || _a === void 0 ? void 0 : _a.hiddenFromGUI); }))).map(([key, val]) => [
-            (0, jsx_runtime_1.jsx)(material_1.ListSubheader, { children: key }, key),
-            val.map(elt => ((0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: elt.name, children: elt.displayName }, elt.name))),
-        ]) }));
-});
-exports.default = TrackAdapterSelector;

package/dist/AddTrackWidget/components/TrackSourceSelect.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '../model';
-declare const TrackSourceSelect: ({ model, }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TrackSourceSelect;

package/dist/AddTrackWidget/components/TrackSourceSelect.js

@@ -1,22 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    paper: {
-        padding: theme.spacing(2),
-    },
-    spacer: {
-        height: theme.spacing(8),
-    },
-}));
-const TrackSourceSelect = (0, mobx_react_1.observer)(function ({ model, }) {
-    const { classes } = useStyles();
-    const rootModel = (0, mobx_state_tree_1.getRoot)(model);
-    return ((0, jsx_runtime_1.jsxs)(material_1.Paper, { className: classes.paper, children: [(0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: "Main file", description: "", location: model.trackData, setLocation: model.setTrackData, setName: model.setTrackName, rootModel: rootModel }), (0, jsx_runtime_1.jsx)("div", { className: classes.spacer }), (0, jsx_runtime_1.jsx)(ui_1.FileSelector, { name: "Index file", description: "(Optional) The URL of the index file is automatically inferred from the URL of the main file if it is not supplied.", location: model.indexTrackData, setLocation: model.setIndexTrackData, setName: model.setTrackName, rootModel: rootModel })] }));
-});
-exports.default = TrackSourceSelect;

package/dist/AddTrackWidget/components/TrackTypeSelector.d.ts

@@ -1,5 +0,0 @@
-import type { AddTrackModel } from '../model';
-declare const TrackTypeSelector: ({ model, }: {
-    model: AddTrackModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default TrackTypeSelector;

package/dist/AddTrackWidget/components/TrackTypeSelector.js

@@ -1,21 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const util_1 = require("@jbrowse/core/util");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const TrackTypeSelector = (0, mobx_react_1.observer)(function ({ model, }) {
-    const { pluginManager } = (0, util_1.getEnv)(model);
-    const { trackType } = model;
-    const trackTypes = pluginManager.getTrackElements();
-    return ((0, jsx_runtime_1.jsx)(material_1.TextField, { value: trackType, variant: "outlined", label: "Track type", select: true, fullWidth: true, onChange: event => {
-            model.setTrackType(event.target.value);
-        }, slotProps: {
-            select: {
-                SelectDisplayProps: {
-                    'data-testid': 'trackTypeSelect',
-                },
-            },
-        }, children: trackTypes.map(({ name, displayName }) => ((0, jsx_runtime_1.jsx)(material_1.MenuItem, { value: name, children: displayName }, name))) }));
-});
-exports.default = TrackTypeSelector;

package/dist/AddTrackWidget/components/Unsupported.d.ts

@@ -1 +0,0 @@
-export default function Unsupported(): import("react/jsx-runtime").JSX.Element;

package/dist/AddTrackWidget/components/Unsupported.js

@@ -1,16 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = Unsupported;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    spacing: {
-        marginBottom: theme.spacing(3),
-    },
-}));
-function Unsupported() {
-    const { classes } = useStyles();
-    return ((0, jsx_runtime_1.jsxs)(material_1.Typography, { className: classes.spacing, children: ["This version of JBrowse cannot display data of this type. It is possible, however, that there is a newer version that can display them. You can", ' ', (0, jsx_runtime_1.jsx)(ui_1.ExternalLink, { href: "https://github.com/GMOD/jbrowse-components/releases", children: "check for new releases" }), ' ', "of JBrowse or", ' ', (0, jsx_runtime_1.jsx)(ui_1.ExternalLink, { href: "https://github.com/GMOD/jbrowse-components/issues/new", children: "file an issue" }), ' ', "and add a feature request for this data type."] }));
-}

package/dist/AddTrackWidget/components/doSubmit.d.ts

@@ -1,4 +0,0 @@
-import type { AddTrackModel } from '../model';
-export declare function doSubmit({ model }: {
-    model: AddTrackModel;
-}): void;