@jbrowse/plugin-data-management 3.7.0 → 4.0.0

package/dist/JB2TrackHubConnection/model.js

@@ -1,56 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = JB2TrackHubConnection;
-const configuration_1 = require("@jbrowse/core/configuration");
-const models_1 = require("@jbrowse/core/pluggableElementTypes/models");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const configSchema_1 = __importDefault(require("./configSchema"));
-function JB2TrackHubConnection(pluginManager) {
-    return mobx_state_tree_1.types
-        .compose('JB2TrackHubConnection', (0, models_1.BaseConnectionModelFactory)(pluginManager), mobx_state_tree_1.types.model({
-        configuration: (0, configuration_1.ConfigurationReference)(configSchema_1.default),
-        type: mobx_state_tree_1.types.literal('JB2TrackHubConnection'),
-    }))
-        .actions(self => ({
-        async connect() {
-            const { doConnect } = await Promise.resolve().then(() => __importStar(require('./doConnect')));
-            doConnect(self);
-        },
-    }));
-}

package/dist/JB2TrackHubConnection/util.d.ts

@@ -1,22 +0,0 @@
-import { GenomesFile, TrackDbFile } from '@gmod/ucsc-hub';
-import type { FileLocation } from '@jbrowse/core/util';
-export declare function fetchGenomesFile(genomesLoc: FileLocation): Promise<GenomesFile>;
-export declare function fetchTrackDbFile(trackDbLoc: FileLocation): Promise<TrackDbFile>;
-export declare function makeLoc(first: string, base: {
-    uri: string;
-    baseUri?: string;
-}): {
-    uri: string;
-    locationType: string;
-};
-export declare function makeLocAlt(first: string, alt: string, base: {
-    uri: string;
-}): {
-    uri: string;
-    locationType: string;
-};
-export declare function makeLoc2(first: string, alt?: string): {
-    uri: string | undefined;
-    locationType: string;
-};
-export declare function resolve(uri: string, baseUri: string): string;

package/dist/JB2TrackHubConnection/util.js

@@ -1,41 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.fetchGenomesFile = fetchGenomesFile;
-exports.fetchTrackDbFile = fetchTrackDbFile;
-exports.makeLoc = makeLoc;
-exports.makeLocAlt = makeLocAlt;
-exports.makeLoc2 = makeLoc2;
-exports.resolve = resolve;
-const ucsc_hub_1 = require("@gmod/ucsc-hub");
-const io_1 = require("@jbrowse/core/util/io");
-async function fetchGenomesFile(genomesLoc) {
-    const genomesFileText = await (0, io_1.openLocation)(genomesLoc).readFile('utf8');
-    return new ucsc_hub_1.GenomesFile(genomesFileText);
-}
-async function fetchTrackDbFile(trackDbLoc) {
-    const text = await (0, io_1.openLocation)(trackDbLoc).readFile('utf8');
-    return new ucsc_hub_1.TrackDbFile(text);
-}
-function makeLoc(first, base) {
-    return {
-        uri: new URL(first, new URL(base.uri, base.baseUri)).href,
-        locationType: 'UriLocation',
-    };
-}
-function makeLocAlt(first, alt, base) {
-    return first ? makeLoc(first, base) : makeLoc(alt, base);
-}
-function makeLoc2(first, alt) {
-    return first
-        ? {
-            uri: first,
-            locationType: 'LocalPath',
-        }
-        : {
-            uri: alt,
-            locationType: 'UriLocation',
-        };
-}
-function resolve(uri, baseUri) {
-    return new URL(uri, baseUri).href;
-}

package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts

@@ -1,6 +0,0 @@
-import type { PluginStoreModel } from '../model';
-declare const AddCustomPluginDialog: ({ onClose, model, }: {
-    onClose: () => void;
-    model: PluginStoreModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default AddCustomPluginDialog;

package/dist/PluginStoreWidget/components/AddCustomPluginDialog.js

@@ -1,65 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const ExpandMore_1 = __importDefault(require("@mui/icons-material/ExpandMore"));
-const material_1 = require("@mui/material");
-const IconButton_1 = __importDefault(require("@mui/material/IconButton"));
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    dialogContent: {
-        display: 'flex',
-        flexDirection: 'column',
-    },
-    expand: {
-        transform: 'rotate(0deg)',
-        marginLeft: 'auto',
-        transition: theme.transitions.create('transform', {
-            duration: theme.transitions.duration.shortest,
-        }),
-    },
-    expandOpen: {
-        transform: 'rotate(180deg)',
-    },
-}));
-const AddCustomPluginDialog = (0, mobx_react_1.observer)(function ({ onClose, model, }) {
-    const { classes, cx } = useStyles();
-    const [umdPluginName, setUMDPluginName] = (0, react_1.useState)('');
-    const [umdPluginUrl, setUMDPluginUrl] = (0, react_1.useState)('');
-    const [esmPluginUrl, setESMPluginUrl] = (0, react_1.useState)('');
-    const [cjsPluginUrl, setCJSPluginUrl] = (0, react_1.useState)('');
-    const [advancedOptionsOpen, setAdvancedOptionsOpen] = (0, react_1.useState)(false);
-    const { jbrowse } = (0, util_1.getSession)(model);
-    const ready = Boolean((umdPluginName && umdPluginUrl) || esmPluginUrl || cjsPluginUrl);
-    function handleSubmit() {
-        if (umdPluginName && umdPluginUrl) {
-            jbrowse.addPlugin({ name: umdPluginName, umdUrl: umdPluginUrl });
-        }
-        else if (esmPluginUrl) {
-            jbrowse.addPlugin({ esmUrl: esmPluginUrl });
-        }
-        else if (cjsPluginUrl) {
-            jbrowse.addPlugin({ cjsUrl: cjsPluginUrl });
-        }
-    }
-    return ((0, jsx_runtime_1.jsx)(ui_1.Dialog, { open: true, onClose: onClose, title: "Add custom plugin", children: (0, jsx_runtime_1.jsxs)("form", { onSubmit: handleSubmit, children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { className: classes.dialogContent, children: [(0, jsx_runtime_1.jsx)(material_1.DialogContentText, { children: "Enter the name of the plugin and its URL. The name should match what is defined in the plugin's build." }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Plugin name", variant: "outlined", value: umdPluginName, onChange: event => {
-                                setUMDPluginName(event.target.value);
-                            } }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Plugin URL", variant: "outlined", value: umdPluginUrl, onChange: event => {
-                                setUMDPluginUrl(event.target.value);
-                            } }), (0, jsx_runtime_1.jsxs)(material_1.DialogContentText, { onClick: () => {
-                                setAdvancedOptionsOpen(!advancedOptionsOpen);
-                            }, children: [(0, jsx_runtime_1.jsx)(IconButton_1.default, { className: cx(classes.expand, {
-                                        [classes.expandOpen]: advancedOptionsOpen,
-                                    }), "aria-expanded": advancedOptionsOpen, "aria-label": "show more", children: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, {}) }), "Advanced options"] }), (0, jsx_runtime_1.jsx)(material_1.Collapse, { in: advancedOptionsOpen, children: (0, jsx_runtime_1.jsxs)("div", { className: classes.dialogContent, children: [(0, jsx_runtime_1.jsx)(material_1.DialogContentText, { children: "The above fields assume that the plugin is built in UMD format. If your plugin is in another format, or you have additional builds you want to add (such as a CJS build for using NodeJS APIs in desktop), you can enter the URLs for those builds below." }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "ESM build URL", variant: "outlined", value: esmPluginUrl, onChange: event => {
-                                            setESMPluginUrl(event.target.value);
-                                        } }), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "CJS build URL", variant: "outlined", value: cjsPluginUrl, onChange: event => {
-                                            setCJSPluginUrl(event.target.value);
-                                        } })] }) })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", onClick: onClose, children: "Cancel" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", onClick: handleSubmit, disabled: !ready, children: "Submit" })] })] }) }));
-});
-exports.default = AddCustomPluginDialog;

package/dist/PluginStoreWidget/components/DeletePluginDialog.d.ts

@@ -1,4 +0,0 @@
-export default function DeletePluginDialog({ onClose, plugin, }: {
-    plugin: string;
-    onClose: (s?: string) => void;
-}): import("react/jsx-runtime").JSX.Element;

package/dist/PluginStoreWidget/components/DeletePluginDialog.js

@@ -1,17 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = DeletePluginDialog;
-const jsx_runtime_1 = require("react/jsx-runtime");
-const ui_1 = require("@jbrowse/core/ui");
-const material_1 = require("@mui/material");
-function DeletePluginDialog({ onClose, plugin, }) {
-    return ((0, jsx_runtime_1.jsxs)(ui_1.Dialog, { open: true, title: `Remove ${plugin}`, onClose: () => {
-            onClose();
-        }, children: [(0, jsx_runtime_1.jsxs)(material_1.DialogContent, { children: [(0, jsx_runtime_1.jsxs)(material_1.Typography, { children: ["Please confirm that you want to remove ", plugin, "."] }), (0, jsx_runtime_1.jsx)(material_1.Typography, { color: "error", children: "Note: if any resources in this session still use this plugin, it may cause your session to crash" })] }), (0, jsx_runtime_1.jsxs)(material_1.DialogActions, { children: [(0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "primary", onClick: () => {
-                            window.setTimeout(() => {
-                                onClose(plugin);
-                            }, 500);
-                        }, children: "Confirm" }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "secondary", onClick: () => {
-                            onClose();
-                        }, children: "Cancel" })] })] }));
-}

package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts

@@ -1,7 +0,0 @@
-import type { PluginStoreModel } from '../model';
-import type { BasePlugin } from '@jbrowse/core/util/types';
-declare const InstalledPlugin: ({ plugin, model, }: {
-    plugin: BasePlugin;
-    model: PluginStoreModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default InstalledPlugin;

package/dist/PluginStoreWidget/components/InstalledPlugin.js

@@ -1,92 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const util_1 = require("@jbrowse/core/util");
-const types_1 = require("@jbrowse/core/util/types");
-const Delete_1 = __importDefault(require("@mui/icons-material/Delete"));
-const Lock_1 = __importDefault(require("@mui/icons-material/Lock"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const util_2 = require("./util");
-const DeletePluginDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./DeletePluginDialog'))));
-const useStyles = (0, mui_1.makeStyles)()(() => ({
-    iconMargin: {
-        marginRight: '0.5rem',
-    },
-}));
-function LockedPluginIconButton() {
-    const { classes } = useStyles();
-    return ((0, jsx_runtime_1.jsx)(material_1.Tooltip, { className: classes.iconMargin, title: "This plugin was installed by an administrator, you cannot remove it.", children: (0, jsx_runtime_1.jsx)("span", { children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { disabled: true, children: (0, jsx_runtime_1.jsx)(Lock_1.default, {}) }) }) }));
-}
-const UninstallPluginIconButton = (0, mobx_react_1.observer)(function ({ plugin, model, }) {
-    const { classes } = useStyles();
-    const { pluginManager } = (0, util_1.getEnv)(model);
-    const session = (0, util_1.getSession)(model);
-    const { jbrowse, adminMode } = session;
-    return ((0, jsx_runtime_1.jsx)(material_1.Tooltip, { className: classes.iconMargin, title: "Uninstall plugin", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { "data-testid": `removePlugin-${plugin.name}`, onClick: () => {
-                session.queueDialog(onClose => [
-                    DeletePluginDialog,
-                    {
-                        plugin: plugin.name,
-                        onClose: (name) => {
-                            if (name) {
-                                const pluginMetadata = pluginManager.pluginMetadata[plugin.name];
-                                if (adminMode) {
-                                    jbrowse.removePlugin(pluginMetadata);
-                                }
-                                else if ((0, types_1.isSessionWithSessionPlugins)(session)) {
-                                    session.removeSessionPlugin(pluginMetadata);
-                                }
-                            }
-                            onClose();
-                        },
-                    },
-                ]);
-            }, children: (0, jsx_runtime_1.jsx)(Delete_1.default, {}) }) }));
-});
-const InstalledPlugin = (0, mobx_react_1.observer)(function ({ plugin, model, }) {
-    const session = (0, util_1.getSession)(model);
-    const { adminMode } = session;
-    return ((0, jsx_runtime_1.jsxs)(material_1.ListItem, { children: [adminMode || (0, util_2.isSessionPlugin)(plugin, session) ? ((0, jsx_runtime_1.jsx)(UninstallPluginIconButton, { plugin: plugin, model: model })) : ((0, jsx_runtime_1.jsx)(LockedPluginIconButton, {})), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: [plugin.name, plugin.version ? `(v${plugin.version})` : '']
-                    .filter(f => !!f)
-                    .join(' ') })] }, plugin.name));
-});
-exports.default = InstalledPlugin;

package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts

@@ -1,7 +0,0 @@
-import type { PluginStoreModel } from '../model';
-import type PluginManager from '@jbrowse/core/PluginManager';
-declare const InstalledPluginsList: ({ pluginManager, model, }: {
-    pluginManager: PluginManager;
-    model: PluginStoreModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default InstalledPluginsList;

package/dist/PluginStoreWidget/components/InstalledPluginsList.js

@@ -1,18 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const InstalledPlugin_1 = __importDefault(require("./InstalledPlugin"));
-const InstalledPluginsList = (0, mobx_react_1.observer)(function InstalledPluginsList({ pluginManager, model, }) {
-    const { plugins } = pluginManager;
-    const { filterText } = model;
-    const externalPlugins = plugins.filter(p => { var _a; return !((_a = pluginManager.pluginMetadata[p.name]) === null || _a === void 0 ? void 0 : _a.isCore); });
-    return ((0, jsx_runtime_1.jsx)(material_1.List, { children: externalPlugins.length > 0 ? (externalPlugins
-            .filter(p => p.name.toLowerCase().includes(filterText.toLowerCase()))
-            .map(p => (0, jsx_runtime_1.jsx)(InstalledPlugin_1.default, { plugin: p, model: model }, p.name))) : ((0, jsx_runtime_1.jsx)(material_1.Typography, { children: "No plugins currently installed" })) }));
-});
-exports.default = InstalledPluginsList;

package/dist/PluginStoreWidget/components/PluginCard.d.ts

@@ -1,7 +0,0 @@
-import type { PluginStoreModel } from '../model';
-import type { JBrowsePlugin } from '@jbrowse/core/util/types';
-declare const PluginCard: ({ plugin, model, }: {
-    plugin: JBrowsePlugin;
-    model: PluginStoreModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default PluginCard;

package/dist/PluginStoreWidget/components/PluginCard.js

@@ -1,58 +0,0 @@
-"use strict";
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const types_1 = require("@jbrowse/core/util/types");
-const Add_1 = __importDefault(require("@mui/icons-material/Add"));
-const Check_1 = __importDefault(require("@mui/icons-material/Check"));
-const Person_1 = __importDefault(require("@mui/icons-material/Person"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mui_1 = require("tss-react/mui");
-const useStyles = (0, mui_1.makeStyles)()({
-    card: {
-        margin: '0.5em',
-    },
-    icon: {
-        marginLeft: '0.5em',
-        marginRight: '0.5em',
-    },
-    bold: {
-        fontWeight: 600,
-    },
-    dataField: {
-        display: 'flex',
-        alignItems: 'center',
-    },
-    mr: {
-        marginRight: '0.5em',
-    },
-});
-const PluginCard = (0, mobx_react_1.observer)(function PluginCard({ plugin, model, }) {
-    const { classes } = useStyles();
-    const session = (0, util_1.getSession)(model);
-    const { pluginManager } = (0, util_1.getEnv)(model);
-    const { runtimePluginDefinitions } = pluginManager;
-    const isInstalled = runtimePluginDefinitions.some(d => 'url' in d && d.url === plugin.url);
-    const [tempDisabled, setTempDisabled] = (0, react_1.useState)(false);
-    const { adminMode, jbrowse } = session;
-    const { name, authors, description } = plugin;
-    return ((0, jsx_runtime_1.jsxs)(material_1.Card, { variant: "outlined", className: classes.card, children: [(0, jsx_runtime_1.jsxs)(material_1.CardContent, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h5", children: (0, jsx_runtime_1.jsx)(ui_1.ExternalLink, { href: `${plugin.location}#readme`, children: plugin.name }) }), (0, jsx_runtime_1.jsxs)("div", { className: classes.dataField, children: [(0, jsx_runtime_1.jsx)(Person_1.default, { className: classes.mr }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: authors.join(', ') })] }), (0, jsx_runtime_1.jsx)(material_1.Typography, { className: classes.bold, children: "Description:" }), (0, jsx_runtime_1.jsx)(material_1.Typography, { children: description })] }), (0, jsx_runtime_1.jsx)(material_1.CardActions, { children: (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", disabled: isInstalled || tempDisabled, startIcon: isInstalled ? (0, jsx_runtime_1.jsx)(Check_1.default, {}) : (0, jsx_runtime_1.jsx)(Add_1.default, {}), onClick: () => {
-                        if (adminMode) {
-                            jbrowse.addPlugin(plugin);
-                        }
-                        else if ((0, types_1.isSessionWithSessionPlugins)(session)) {
-                            session.addSessionPlugin(plugin);
-                        }
-                        else {
-                            session.notify('No way to install plugin');
-                        }
-                        setTempDisabled(true);
-                    }, children: isInstalled ? 'Installed' : 'Install' }) })] }, name));
-});
-exports.default = PluginCard;

package/dist/PluginStoreWidget/components/PluginStoreWidget.d.ts

@@ -1,5 +0,0 @@
-import type { PluginStoreModel } from '../model';
-declare const PluginStoreWidget: ({ model, }: {
-    model: PluginStoreModel;
-}) => import("react/jsx-runtime").JSX.Element;
-export default PluginStoreWidget;

package/dist/PluginStoreWidget/components/PluginStoreWidget.js

@@ -1,104 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const jsx_runtime_1 = require("react/jsx-runtime");
-const react_1 = require("react");
-const ui_1 = require("@jbrowse/core/ui");
-const util_1 = require("@jbrowse/core/util");
-const Clear_1 = __importDefault(require("@mui/icons-material/Clear"));
-const ExpandMore_1 = __importDefault(require("@mui/icons-material/ExpandMore"));
-const InfoOutlined_1 = __importDefault(require("@mui/icons-material/InfoOutlined"));
-const material_1 = require("@mui/material");
-const mobx_react_1 = require("mobx-react");
-const mobx_state_tree_1 = require("mobx-state-tree");
-const mui_1 = require("tss-react/mui");
-const InstalledPluginsList_1 = __importDefault(require("./InstalledPluginsList"));
-const PluginCard_1 = __importDefault(require("./PluginCard"));
-const util_2 = require("./util");
-const AddCustomPluginDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./AddCustomPluginDialog'))));
-const useStyles = (0, mui_1.makeStyles)()(theme => ({
-    expandIcon: {
-        color: theme.palette.tertiary.contrastText,
-    },
-    adminBadge: {
-        borderRadius: 3,
-        backgroundColor: theme.palette.quaternary.main,
-        padding: '1em',
-        display: 'flex',
-        alignContent: 'center',
-    },
-    customPluginButton: {
-        margin: '1em auto',
-        display: 'flex',
-    },
-    mr: {
-        marginRight: '0.3em',
-    },
-    m: {
-        margin: '1em',
-    },
-}));
-const PluginStoreWidget = (0, mobx_react_1.observer)(function ({ model, }) {
-    const { classes } = useStyles();
-    const { plugins, error } = (0, util_2.useFetchPlugins)();
-    const { filterText } = model;
-    const session = (0, util_1.getSession)(model);
-    const { adminMode } = session;
-    const { pluginManager } = (0, mobx_state_tree_1.getEnv)(model);
-    return ((0, jsx_runtime_1.jsxs)("div", { children: [adminMode && ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [!util_1.isElectron && ((0, jsx_runtime_1.jsxs)("div", { className: classes.adminBadge, children: [(0, jsx_runtime_1.jsx)(InfoOutlined_1.default, { className: classes.mr }), (0, jsx_runtime_1.jsxs)(material_1.Typography, { children: ["You are using the ", (0, jsx_runtime_1.jsx)("code", { children: "admin-server" }), ". Any changes you make will be saved to your configuration file. You also have the ability to add custom plugins that are not in the store."] })] })), (0, jsx_runtime_1.jsx)(material_1.Button, { className: classes.customPluginButton, variant: "contained", onClick: () => {
-                            session.queueDialog(onClose => [
-                                AddCustomPluginDialog,
-                                {
-                                    model,
-                                    onClose,
-                                },
-                            ]);
-                        }, children: "Add custom plugin" })] })), (0, jsx_runtime_1.jsx)(material_1.TextField, { label: "Filter plugins", value: filterText, onChange: event => {
-                    model.setFilterText(event.target.value);
-                }, fullWidth: true, slotProps: {
-                    input: {
-                        endAdornment: ((0, jsx_runtime_1.jsx)(material_1.InputAdornment, { position: "end", children: (0, jsx_runtime_1.jsx)(material_1.IconButton, { onClick: () => {
-                                    model.clearFilterText();
-                                }, children: (0, jsx_runtime_1.jsx)(Clear_1.default, {}) }) })),
-                    },
-                } }), (0, jsx_runtime_1.jsxs)(material_1.Accordion, { defaultExpanded: true, children: [(0, jsx_runtime_1.jsx)(material_1.AccordionSummary, { expandIcon: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, { className: classes.expandIcon }), children: (0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h5", children: "Installed plugins" }) }), (0, jsx_runtime_1.jsx)("div", { className: classes.m, children: (0, jsx_runtime_1.jsx)(InstalledPluginsList_1.default, { pluginManager: pluginManager, model: model }) })] }), (0, jsx_runtime_1.jsxs)(material_1.Accordion, { defaultExpanded: true, children: [(0, jsx_runtime_1.jsx)(material_1.AccordionSummary, { expandIcon: (0, jsx_runtime_1.jsx)(ExpandMore_1.default, { className: classes.expandIcon }), children: (0, jsx_runtime_1.jsx)(material_1.Typography, { variant: "h5", children: "Available plugins" }) }), error ? ((0, jsx_runtime_1.jsx)(material_1.Typography, { color: "error", children: `${error}` })) : plugins ? (plugins
-                        .filter(plugin => !(util_1.isElectron && plugin.cjsUrl) &&
-                        plugin.name.toLowerCase().includes(filterText.toLowerCase()))
-                        .map(plugin => ((0, jsx_runtime_1.jsx)(PluginCard_1.default, { plugin: plugin, model: model }, plugin.name)))) : ((0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, {}))] })] }));
-});
-exports.default = PluginStoreWidget;

package/dist/PluginStoreWidget/components/util.d.ts

@@ -1,6 +0,0 @@
-import type { AbstractSessionModel, BasePlugin, JBrowsePlugin } from '@jbrowse/core/util/types';
-export declare function useFetchPlugins(): {
-    plugins: JBrowsePlugin[] | undefined;
-    error: unknown;
-};
-export declare function isSessionPlugin(plugin: BasePlugin, session: AbstractSessionModel): boolean;

package/dist/PluginStoreWidget/components/util.js

@@ -1,35 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.useFetchPlugins = useFetchPlugins;
-exports.isSessionPlugin = isSessionPlugin;
-const react_1 = require("react");
-const util_1 = require("@jbrowse/core/util");
-function useFetchPlugins() {
-    const [plugins, setPlugins] = (0, react_1.useState)();
-    const [error, setError] = (0, react_1.useState)();
-    (0, react_1.useEffect)(() => {
-        ;
-        (async () => {
-            try {
-                const res = await fetch('https://jbrowse.org/plugin-store/plugins.json');
-                if (!res.ok) {
-                    const err = await res.text();
-                    throw new Error(`HTTP ${res.status} fetching plugins: ${err}`);
-                }
-                const array = await res.json();
-                setPlugins(array.plugins);
-            }
-            catch (e) {
-                console.error(e);
-                setError(e);
-            }
-        })();
-    }, []);
-    return { plugins, error };
-}
-function isSessionPlugin(plugin, session) {
-    const { pluginManager } = (0, util_1.getEnv)(session);
-    return (0, util_1.isSessionWithSessionPlugins)(session)
-        ? session.sessionPlugins.some(p => { var _a; return ((_a = pluginManager.pluginMetadata[plugin.name]) === null || _a === void 0 ? void 0 : _a.url) === p.url; })
-        : false;
-}

package/dist/PluginStoreWidget/index.d.ts

@@ -1,2 +0,0 @@
-import type PluginManager from '@jbrowse/core/PluginManager';
-export default function PluginStoreWidgetF(pluginManager: PluginManager): void;

package/dist/PluginStoreWidget/index.js

@@ -1,55 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __importDefault = (this && this.__importDefault) || function (mod) {
-    return (mod && mod.__esModule) ? mod : { "default": mod };
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.default = PluginStoreWidgetF;
-const react_1 = require("react");
-const configuration_1 = require("@jbrowse/core/configuration");
-const pluggableElementTypes_1 = require("@jbrowse/core/pluggableElementTypes");
-const model_1 = __importDefault(require("./model"));
-const configSchema = (0, configuration_1.ConfigurationSchema)('PluginStoreWidget', {});
-function PluginStoreWidgetF(pluginManager) {
-    pluginManager.addWidgetType(() => {
-        return new pluggableElementTypes_1.WidgetType({
-            name: 'PluginStoreWidget',
-            heading: 'Plugin store',
-            configSchema,
-            stateModel: (0, model_1.default)(pluginManager),
-            ReactComponent: (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./components/PluginStoreWidget')))),
-        });
-    });
-}