@jbrowse/plugin-data-management 2.6.1 → 2.6.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js +0 -1
- package/dist/AddConnectionWidget/components/ConfigureConnection.js +0 -1
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js +0 -1
- package/dist/AddConnectionWidget/index.js +0 -1
- package/dist/AddConnectionWidget/model.js +0 -1
- package/dist/AddTrackWidget/components/AddTrackWidget.js +0 -1
- package/dist/AddTrackWidget/components/ConfirmTrack.js +0 -1
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js +0 -1
- package/dist/AddTrackWidget/components/PasteConfigWorkflow.js +0 -1
- package/dist/AddTrackWidget/components/TextIndexingConfig.js +0 -1
- package/dist/AddTrackWidget/components/TrackAdapterSelector.js +0 -1
- package/dist/AddTrackWidget/components/TrackSourceSelect.js +0 -1
- package/dist/AddTrackWidget/components/TrackTypeSelector.js +0 -1
- package/dist/AddTrackWidget/index.js +0 -1
- package/dist/AddTrackWidget/model.js +0 -1
- package/dist/AssemblyManager/AssemblyAddForm.js +0 -1
- package/dist/AssemblyManager/AssemblyEditor.js +0 -1
- package/dist/AssemblyManager/AssemblyManager.js +0 -1
- package/dist/AssemblyManager/AssemblyTable.js +0 -1
- package/dist/AssemblyManager/index.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +4 -6
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/util.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +35 -20
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +10 -7
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +2 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +22 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +1 -2
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/util.d.ts +2 -1
- package/dist/HierarchicalTrackSelectorWidget/components/util.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/configSchema.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/filterTracks.d.ts +12 -0
- package/dist/HierarchicalTrackSelectorWidget/filterTracks.js +32 -0
- package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +21 -0
- package/dist/HierarchicalTrackSelectorWidget/generateHierarchy.js +98 -0
- package/dist/HierarchicalTrackSelectorWidget/index.js +0 -1
- package/dist/HierarchicalTrackSelectorWidget/model.d.ts +68 -28
- package/dist/HierarchicalTrackSelectorWidget/model.js +149 -118
- package/dist/HierarchicalTrackSelectorWidget/util.d.ts +12 -0
- package/dist/HierarchicalTrackSelectorWidget/util.js +53 -0
- package/dist/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +7 -0
- package/dist/PluginStoreWidget/components/{CustomPluginForm.js → AddCustomPluginDialog.js} +12 -22
- package/dist/PluginStoreWidget/components/DeletePluginDialog.d.ts +5 -0
- package/dist/PluginStoreWidget/components/DeletePluginDialog.js +28 -0
- package/dist/PluginStoreWidget/components/InstalledPlugin.d.ts +2 -5
- package/dist/PluginStoreWidget/components/InstalledPlugin.js +19 -51
- package/dist/PluginStoreWidget/components/InstalledPluginsList.d.ts +2 -3
- package/dist/PluginStoreWidget/components/InstalledPluginsList.js +6 -10
- package/dist/PluginStoreWidget/components/PluginCard.js +3 -6
- package/dist/PluginStoreWidget/components/PluginStoreWidget.js +11 -40
- package/dist/PluginStoreWidget/components/util.d.ts +5 -0
- package/dist/PluginStoreWidget/components/util.js +29 -0
- package/dist/PluginStoreWidget/index.js +0 -1
- package/dist/PluginStoreWidget/model.d.ts +2 -2
- package/dist/PluginStoreWidget/model.js +2 -3
- package/dist/SetDefaultSession/SetDefaultSession.js +0 -1
- package/dist/SetDefaultSession/index.js +0 -1
- package/dist/index.js +0 -1
- package/dist/ucsc-trackhub/configSchema.js +0 -1
- package/dist/ucsc-trackhub/index.js +0 -1
- package/dist/ucsc-trackhub/model.js +0 -1
- package/dist/ucsc-trackhub/ucscAssemblies.js +0 -1
- package/dist/ucsc-trackhub/ucscTrackHub.js +0 -1
- package/esm/AddConnectionWidget/components/AddConnectionWidget.js +0 -1
- package/esm/AddConnectionWidget/components/ConfigureConnection.js +0 -1
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js +0 -1
- package/esm/AddConnectionWidget/index.js +0 -1
- package/esm/AddConnectionWidget/model.js +0 -1
- package/esm/AddTrackWidget/components/AddTrackWidget.js +0 -1
- package/esm/AddTrackWidget/components/ConfirmTrack.js +0 -1
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js +0 -1
- package/esm/AddTrackWidget/components/PasteConfigWorkflow.js +0 -1
- package/esm/AddTrackWidget/components/TextIndexingConfig.js +0 -1
- package/esm/AddTrackWidget/components/TrackAdapterSelector.js +0 -1
- package/esm/AddTrackWidget/components/TrackSourceSelect.js +0 -1
- package/esm/AddTrackWidget/components/TrackTypeSelector.js +0 -1
- package/esm/AddTrackWidget/index.js +0 -1
- package/esm/AddTrackWidget/model.js +0 -1
- package/esm/AssemblyManager/AssemblyAddForm.js +0 -1
- package/esm/AssemblyManager/AssemblyEditor.js +0 -1
- package/esm/AssemblyManager/AssemblyManager.js +0 -1
- package/esm/AssemblyManager/AssemblyTable.js +0 -1
- package/esm/AssemblyManager/index.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js +1 -3
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/util.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js +34 -19
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js +10 -7
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.d.ts +2 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js +22 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js +1 -2
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/util.d.ts +2 -1
- package/esm/HierarchicalTrackSelectorWidget/components/util.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/configSchema.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/filterTracks.d.ts +12 -0
- package/esm/HierarchicalTrackSelectorWidget/filterTracks.js +28 -0
- package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.d.ts +21 -0
- package/esm/HierarchicalTrackSelectorWidget/generateHierarchy.js +94 -0
- package/esm/HierarchicalTrackSelectorWidget/index.js +0 -1
- package/esm/HierarchicalTrackSelectorWidget/model.d.ts +68 -28
- package/esm/HierarchicalTrackSelectorWidget/model.js +151 -117
- package/esm/HierarchicalTrackSelectorWidget/util.d.ts +12 -0
- package/esm/HierarchicalTrackSelectorWidget/util.js +45 -0
- package/esm/PluginStoreWidget/components/AddCustomPluginDialog.d.ts +7 -0
- package/esm/PluginStoreWidget/components/{CustomPluginForm.js → AddCustomPluginDialog.js} +12 -22
- package/esm/PluginStoreWidget/components/DeletePluginDialog.d.ts +5 -0
- package/esm/PluginStoreWidget/components/DeletePluginDialog.js +22 -0
- package/esm/PluginStoreWidget/components/InstalledPlugin.d.ts +2 -5
- package/esm/PluginStoreWidget/components/InstalledPlugin.js +22 -54
- package/esm/PluginStoreWidget/components/InstalledPluginsList.d.ts +2 -3
- package/esm/PluginStoreWidget/components/InstalledPluginsList.js +6 -10
- package/esm/PluginStoreWidget/components/PluginCard.js +3 -6
- package/esm/PluginStoreWidget/components/PluginStoreWidget.js +12 -41
- package/esm/PluginStoreWidget/components/util.d.ts +5 -0
- package/esm/PluginStoreWidget/components/util.js +25 -0
- package/esm/PluginStoreWidget/index.js +0 -1
- package/esm/PluginStoreWidget/model.d.ts +2 -2
- package/esm/PluginStoreWidget/model.js +1 -2
- package/esm/SetDefaultSession/SetDefaultSession.js +0 -1
- package/esm/SetDefaultSession/index.js +0 -1
- package/esm/index.js +0 -1
- package/esm/ucsc-trackhub/configSchema.js +0 -1
- package/esm/ucsc-trackhub/index.js +0 -1
- package/esm/ucsc-trackhub/model.js +0 -1
- package/esm/ucsc-trackhub/ucscAssemblies.js +0 -1
- package/esm/ucsc-trackhub/ucscTrackHub.js +0 -1
- package/package.json +3 -4
- package/dist/AddConnectionWidget/components/AddConnectionWidget.js.map +0 -1
- package/dist/AddConnectionWidget/components/ConfigureConnection.js.map +0 -1
- package/dist/AddConnectionWidget/components/ConnectionTypeSelect.js.map +0 -1
- package/dist/AddConnectionWidget/index.js.map +0 -1
- package/dist/AddConnectionWidget/model.js.map +0 -1
- package/dist/AddTrackWidget/components/AddTrackWidget.js.map +0 -1
- package/dist/AddTrackWidget/components/ConfirmTrack.js.map +0 -1
- package/dist/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +0 -1
- package/dist/AddTrackWidget/components/PasteConfigWorkflow.js.map +0 -1
- package/dist/AddTrackWidget/components/TextIndexingConfig.js.map +0 -1
- package/dist/AddTrackWidget/components/TrackAdapterSelector.js.map +0 -1
- package/dist/AddTrackWidget/components/TrackSourceSelect.js.map +0 -1
- package/dist/AddTrackWidget/components/TrackTypeSelector.js.map +0 -1
- package/dist/AddTrackWidget/index.js.map +0 -1
- package/dist/AddTrackWidget/model.js.map +0 -1
- package/dist/AssemblyManager/AssemblyAddForm.js.map +0 -1
- package/dist/AssemblyManager/AssemblyEditor.js.map +0 -1
- package/dist/AssemblyManager/AssemblyManager.js.map +0 -1
- package/dist/AssemblyManager/AssemblyTable.js.map +0 -1
- package/dist/AssemblyManager/index.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/ShoppingCart.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/faceted/util.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/components/util.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/configSchema.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/index.js.map +0 -1
- package/dist/HierarchicalTrackSelectorWidget/model.js.map +0 -1
- package/dist/PluginStoreWidget/components/CustomPluginForm.d.ts +0 -9
- package/dist/PluginStoreWidget/components/CustomPluginForm.js.map +0 -1
- package/dist/PluginStoreWidget/components/InstalledPlugin.js.map +0 -1
- package/dist/PluginStoreWidget/components/InstalledPluginsList.js.map +0 -1
- package/dist/PluginStoreWidget/components/PluginCard.js.map +0 -1
- package/dist/PluginStoreWidget/components/PluginStoreWidget.js.map +0 -1
- package/dist/PluginStoreWidget/index.js.map +0 -1
- package/dist/PluginStoreWidget/model.js.map +0 -1
- package/dist/SetDefaultSession/SetDefaultSession.js.map +0 -1
- package/dist/SetDefaultSession/index.js.map +0 -1
- package/dist/index.js.map +0 -1
- package/dist/ucsc-trackhub/configSchema.js.map +0 -1
- package/dist/ucsc-trackhub/index.js.map +0 -1
- package/dist/ucsc-trackhub/model.js.map +0 -1
- package/dist/ucsc-trackhub/ucscAssemblies.js.map +0 -1
- package/dist/ucsc-trackhub/ucscTrackHub.js.map +0 -1
- package/esm/AddConnectionWidget/components/AddConnectionWidget.js.map +0 -1
- package/esm/AddConnectionWidget/components/ConfigureConnection.js.map +0 -1
- package/esm/AddConnectionWidget/components/ConnectionTypeSelect.js.map +0 -1
- package/esm/AddConnectionWidget/index.js.map +0 -1
- package/esm/AddConnectionWidget/model.js.map +0 -1
- package/esm/AddTrackWidget/components/AddTrackWidget.js.map +0 -1
- package/esm/AddTrackWidget/components/ConfirmTrack.js.map +0 -1
- package/esm/AddTrackWidget/components/DefaultAddTrackWorkflow.js.map +0 -1
- package/esm/AddTrackWidget/components/PasteConfigWorkflow.js.map +0 -1
- package/esm/AddTrackWidget/components/TextIndexingConfig.js.map +0 -1
- package/esm/AddTrackWidget/components/TrackAdapterSelector.js.map +0 -1
- package/esm/AddTrackWidget/components/TrackSourceSelect.js.map +0 -1
- package/esm/AddTrackWidget/components/TrackTypeSelector.js.map +0 -1
- package/esm/AddTrackWidget/index.js.map +0 -1
- package/esm/AddTrackWidget/model.js.map +0 -1
- package/esm/AssemblyManager/AssemblyAddForm.js.map +0 -1
- package/esm/AssemblyManager/AssemblyEditor.js.map +0 -1
- package/esm/AssemblyManager/AssemblyManager.js.map +0 -1
- package/esm/AssemblyManager/AssemblyTable.js.map +0 -1
- package/esm/AssemblyManager/index.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalFab.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/ShoppingCart.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/faceted/util.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/components/util.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/configSchema.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/index.js.map +0 -1
- package/esm/HierarchicalTrackSelectorWidget/model.js.map +0 -1
- package/esm/PluginStoreWidget/components/CustomPluginForm.d.ts +0 -9
- package/esm/PluginStoreWidget/components/CustomPluginForm.js.map +0 -1
- package/esm/PluginStoreWidget/components/InstalledPlugin.js.map +0 -1
- package/esm/PluginStoreWidget/components/InstalledPluginsList.js.map +0 -1
- package/esm/PluginStoreWidget/components/PluginCard.js.map +0 -1
- package/esm/PluginStoreWidget/components/PluginStoreWidget.js.map +0 -1
- package/esm/PluginStoreWidget/index.js.map +0 -1
- package/esm/PluginStoreWidget/model.js.map +0 -1
- package/esm/SetDefaultSession/SetDefaultSession.js.map +0 -1
- package/esm/SetDefaultSession/index.js.map +0 -1
- package/esm/index.js.map +0 -1
- package/esm/ucsc-trackhub/configSchema.js.map +0 -1
- package/esm/ucsc-trackhub/index.js.map +0 -1
- package/esm/ucsc-trackhub/model.js.map +0 -1
- package/esm/ucsc-trackhub/ucscAssemblies.js.map +0 -1
- package/esm/ucsc-trackhub/ucscTrackHub.js.map +0 -1
- package/src/AddConnectionWidget/components/AddConnectionWidget.test.tsx +0 -139
- package/src/AddConnectionWidget/components/AddConnectionWidget.tsx +0 -114
- package/src/AddConnectionWidget/components/ConfigureConnection.tsx +0 -26
- package/src/AddConnectionWidget/components/ConnectionTypeSelect.tsx +0 -64
- package/src/AddConnectionWidget/components/__snapshots__/AddConnectionWidget.test.tsx.snap +0 -236
- package/src/AddConnectionWidget/index.ts +0 -19
- package/src/AddConnectionWidget/model.ts +0 -7
- package/src/AddTrackWidget/components/AddTrackWidget.test.tsx +0 -118
- package/src/AddTrackWidget/components/AddTrackWidget.tsx +0 -43
- package/src/AddTrackWidget/components/ConfirmTrack.tsx +0 -189
- package/src/AddTrackWidget/components/DefaultAddTrackWorkflow.tsx +0 -201
- package/src/AddTrackWidget/components/PasteConfigWorkflow.tsx +0 -65
- package/src/AddTrackWidget/components/TextIndexingConfig.tsx +0 -132
- package/src/AddTrackWidget/components/TrackAdapterSelector.tsx +0 -73
- package/src/AddTrackWidget/components/TrackSourceSelect.tsx +0 -48
- package/src/AddTrackWidget/components/TrackTypeSelector.tsx +0 -46
- package/src/AddTrackWidget/index.test.tsx +0 -247
- package/src/AddTrackWidget/index.ts +0 -19
- package/src/AddTrackWidget/model.ts +0 -179
- package/src/AssemblyManager/AssemblyAddForm.tsx +0 -250
- package/src/AssemblyManager/AssemblyEditor.tsx +0 -20
- package/src/AssemblyManager/AssemblyManager.test.tsx +0 -93
- package/src/AssemblyManager/AssemblyManager.tsx +0 -84
- package/src/AssemblyManager/AssemblyTable.tsx +0 -88
- package/src/AssemblyManager/index.ts +0 -1
- package/src/HierarchicalTrackSelectorWidget/components/HierarchicalFab.tsx +0 -94
- package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.test.tsx +0 -148
- package/src/HierarchicalTrackSelectorWidget/components/HierarchicalTrackSelector.tsx +0 -87
- package/src/HierarchicalTrackSelectorWidget/components/ShoppingCart.tsx +0 -73
- package/src/HierarchicalTrackSelectorWidget/components/__snapshots__/HierarchicalTrackSelector.test.tsx.snap +0 -265
- package/src/HierarchicalTrackSelectorWidget/components/dialogs/CloseConnectionDialog.tsx +0 -65
- package/src/HierarchicalTrackSelectorWidget/components/dialogs/DeleteConnectionDialog.tsx +0 -53
- package/src/HierarchicalTrackSelectorWidget/components/dialogs/ManageConnectionsDialog.tsx +0 -84
- package/src/HierarchicalTrackSelectorWidget/components/dialogs/ToggleConnectionsDialog.tsx +0 -127
- package/src/HierarchicalTrackSelectorWidget/components/faceted/FacetFilters.tsx +0 -138
- package/src/HierarchicalTrackSelectorWidget/components/faceted/FacetedDialog.tsx +0 -29
- package/src/HierarchicalTrackSelectorWidget/components/faceted/FacetedHeader.tsx +0 -96
- package/src/HierarchicalTrackSelectorWidget/components/faceted/FacetedSelector.tsx +0 -342
- package/src/HierarchicalTrackSelectorWidget/components/faceted/util.ts +0 -5
- package/src/HierarchicalTrackSelectorWidget/components/tree/HamburgerMenu.tsx +0 -190
- package/src/HierarchicalTrackSelectorWidget/components/tree/HierarchicalHeader.tsx +0 -83
- package/src/HierarchicalTrackSelectorWidget/components/tree/HierarchicalTree.tsx +0 -101
- package/src/HierarchicalTrackSelectorWidget/components/tree/TrackCategory.tsx +0 -92
- package/src/HierarchicalTrackSelectorWidget/components/tree/TrackLabel.tsx +0 -106
- package/src/HierarchicalTrackSelectorWidget/components/tree/TrackListNode.tsx +0 -84
- package/src/HierarchicalTrackSelectorWidget/components/util.ts +0 -41
- package/src/HierarchicalTrackSelectorWidget/configSchema.ts +0 -3
- package/src/HierarchicalTrackSelectorWidget/index.ts +0 -25
- package/src/HierarchicalTrackSelectorWidget/model.test.js +0 -24
- package/src/HierarchicalTrackSelectorWidget/model.ts +0 -339
- package/src/PluginStoreWidget/components/CustomPluginForm.tsx +0 -165
- package/src/PluginStoreWidget/components/InstalledPlugin.tsx +0 -167
- package/src/PluginStoreWidget/components/InstalledPluginsList.tsx +0 -49
- package/src/PluginStoreWidget/components/PluginCard.tsx +0 -106
- package/src/PluginStoreWidget/components/PluginStoreWidget.test.tsx +0 -132
- package/src/PluginStoreWidget/components/PluginStoreWidget.tsx +0 -181
- package/src/PluginStoreWidget/components/__snapshots__/PluginStoreWidget.test.tsx.snap +0 -869
- package/src/PluginStoreWidget/index.ts +0 -19
- package/src/PluginStoreWidget/model.test.tsx +0 -15
- package/src/PluginStoreWidget/model.ts +0 -26
- package/src/SetDefaultSession/SetDefaultSession.test.tsx +0 -59
- package/src/SetDefaultSession/SetDefaultSession.tsx +0 -76
- package/src/SetDefaultSession/index.ts +0 -1
- package/src/__snapshots__/index.test.ts.snap +0 -9
- package/src/index.test.ts +0 -54
- package/src/index.ts +0 -37
- package/src/ucsc-trackhub/configSchema.ts +0 -41
- package/src/ucsc-trackhub/index.ts +0 -19
- package/src/ucsc-trackhub/model.ts +0 -111
- package/src/ucsc-trackhub/ucscAssemblies.ts +0 -201
- package/src/ucsc-trackhub/ucscTrackHub.ts +0 -325
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@@ -14,8 +14,7 @@ import { getEnv, getSession, measureGridWidth, useDebounce, } from '@jbrowse/cor
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import { readConfObject, } from '@jbrowse/core/configuration';
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// icons
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import MoreHoriz from '@mui/icons-material/MoreHoriz';
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-
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import { matches } from '../../model';
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import { matches } from '../../util';
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import FacetedHeader from './FacetedHeader';
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import FacetFilters from './FacetFilters';
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import { getRootKeys } from './util';
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@@ -185,4 +184,3 @@ export default observer(function FacetedSelector({ model, }) {
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React.createElement("div", { style: { width: panelWidth, overflowY: 'auto', overflowX: 'hidden' } },
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React.createElement(FacetFilters, { width: panelWidth - 10, rows: rows, columns: columns, dispatch: dispatch, filters: filters })))));
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});
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//# sourceMappingURL=FacetedSelector.js.map
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@@ -1,10 +1,8 @@
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import React, { Suspense, lazy, useState } from 'react';
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import { IconButton } from '@mui/material';
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import { makeStyles } from 'tss-react/mui';
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import { observer } from 'mobx-react';
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import JBrowseMenu from '@jbrowse/core/ui/Menu';
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import { getSession, isSessionModelWithConnectionEditing, isSessionModelWithConnections, isSessionModelWithWidgets, isSessionWithAddTracks, } from '@jbrowse/core/util';
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import { readConfObject, } from '@jbrowse/core/configuration';
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import CascadingMenuButton from '@jbrowse/core/ui/CascadingMenuButton';
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// icons
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import MenuIcon from '@mui/icons-material/Menu';
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// lazy components
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@@ -12,20 +10,12 @@ const CloseConnectionDlg = lazy(() => import('../dialogs/CloseConnectionDialog')
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const DeleteConnectionDlg = lazy(() => import('../dialogs/DeleteConnectionDialog'));
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const ManageConnectionsDlg = lazy(() => import('../dialogs/ManageConnectionsDialog'));
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const ToggleConnectionsDlg = lazy(() => import('../dialogs/ToggleConnectionsDialog'));
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const useStyles = makeStyles()(theme => ({
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menuIcon: {
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marginRight: theme.spacing(1),
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marginBottom: 0,
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},
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}));
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export default observer(function HamburgerMenu({ model, }) {
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const session = getSession(model);
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const [menuEl, setMenuEl] = useState();
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const [modalInfo, setModalInfo] = useState();
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const [deleteDlgDetails, setDeleteDlgDetails] = useState();
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const [connectionToggleOpen, setConnectionToggleOpen] = useState(false);
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const [connectionManagerOpen, setConnectionManagerOpen] = useState(false);
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const { classes } = useStyles();
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function breakConnection(connectionConf, deletingConnection) {
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const name = readConfObject(connectionConf, 'name');
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const result = session.prepareToBreakConnection(connectionConf);
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@@ -48,12 +38,7 @@ export default observer(function HamburgerMenu({ model, }) {
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}
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}
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return (React.createElement(React.Fragment, null,
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React.createElement(
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React.createElement(MenuIcon, null)),
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React.createElement(JBrowseMenu, { anchorEl: menuEl, open: Boolean(menuEl), onMenuItemClick: (_, callback) => {
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callback();
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setMenuEl(undefined);
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}, onClose: () => setMenuEl(undefined), menuItems: [
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React.createElement(CascadingMenuButton, { menuItems: [
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...(isSessionWithAddTracks(session)
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? [
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{
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@@ -92,11 +77,41 @@ export default observer(function HamburgerMenu({ model, }) {
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},
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]
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: []),
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{ type: 'divider' },
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{
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label: 'Sort tracks by name',
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type: 'checkbox',
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checked: model.activeSortTrackNames,
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onClick: () => model.setSortTrackNames(!model.activeSortTrackNames),
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},
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{
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label: 'Sort categories by name',
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type: 'checkbox',
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checked: model.activeSortCategories,
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onClick: () => model.setSortCategories(!model.activeSortCategories),
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},
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{ type: 'divider' },
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...(model.hasAnySubcategories
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? [
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{
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label: 'Collapse subcategories',
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onClick: () => model.collapseSubCategories(),
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},
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]
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: []),
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{
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label: 'Collapse top-level categories',
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onClick: () => model.collapseTopLevelCategories(),
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},
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{
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label: 'Expand all categories',
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onClick: () => model.expandAllCategories(),
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},
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] },
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React.createElement(MenuIcon, null)),
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React.createElement(Suspense, { fallback: React.createElement(React.Fragment, null) },
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modalInfo ? (React.createElement(CloseConnectionDlg, { modalInfo: modalInfo, onClose: () => setModalInfo(undefined) })) : null,
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deleteDlgDetails ? (React.createElement(DeleteConnectionDlg, { handleClose: () => setDeleteDlgDetails(undefined), deleteDialogDetails: deleteDlgDetails, session: session })) : null,
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connectionManagerOpen ? (React.createElement(ManageConnectionsDlg, { handleClose: () => setConnectionManagerOpen(false), breakConnection: breakConnection, session: session })) : null,
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connectionToggleOpen ? (React.createElement(ToggleConnectionsDlg, { handleClose: () => setConnectionToggleOpen(false), session: session, breakConnection: breakConnection })) : null)));
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});
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-
//# sourceMappingURL=HamburgerMenu.js.map
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@@ -17,21 +17,24 @@ const useStyles = makeStyles()(theme => ({
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marginBottom: 0,
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},
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}));
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const SearchTracksTextField = observer(function ({ model, }) {
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const { filterText } = model;
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const { classes } = useStyles();
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return (React.createElement(TextField, { className: classes.searchBox, label: "Filter tracks", value: filterText, onChange: event => model.setFilterText(event.target.value), fullWidth: true, InputProps: {
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endAdornment: (React.createElement(InputAdornment, { position: "end" },
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React.createElement(IconButton, { onClick: () => model.clearFilterText() },
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React.createElement(ClearIcon, null)))),
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} }));
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});
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function HierarchicalTrackSelectorHeader({ model, setHeaderHeight, }) {
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const { classes } = useStyles();
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const [facetedOpen, setFacetedOpen] = useState(false);
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const { filterText } = model;
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return (React.createElement("div", { ref: ref => setHeaderHeight((ref === null || ref === void 0 ? void 0 : ref.getBoundingClientRect().height) || 0), "data-testid": "hierarchical_track_selector" },
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React.createElement("div", { style: { display: 'flex' } },
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React.createElement(HamburgerMenu, { model: model }),
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React.createElement(ShoppingCart, { model: model }),
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React.createElement(
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endAdornment: (React.createElement(InputAdornment, { position: "end" },
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React.createElement(IconButton, { onClick: () => model.clearFilterText() },
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React.createElement(ClearIcon, null)))),
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} }),
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React.createElement(SearchTracksTextField, { model: model }),
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React.createElement(Button, { className: classes.menuIcon, onClick: () => setFacetedOpen(true) }, "Open faceted selector")),
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React.createElement(Suspense, { fallback: React.createElement("div", null) }, facetedOpen ? (React.createElement(FacetedDialog, { handleClose: () => setFacetedOpen(false), model: model })) : null)));
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}
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export default observer(HierarchicalTrackSelectorHeader);
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-
//# sourceMappingURL=HierarchicalHeader.js.map
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@@ -1,5 +1,6 @@
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1
1
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import React from 'react';
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2
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-
import { TreeNode
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2
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import { TreeNode } from '../../generateHierarchy';
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import { HierarchicalTrackSelectorModel } from '../../model';
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declare const _default: ({ height, tree, model, }: {
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height: number;
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tree: TreeNode;
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@@ -60,4 +60,3 @@ export default observer(function HierarchicalTree({ height, tree, model, }) {
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60
60
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return (React.createElement(React.Fragment, null,
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React.createElement(VariableSizeTree, { ref: treeRef, treeWalker: treeWalker, height: height }, Node)));
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62
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});
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-
//# sourceMappingURL=HierarchicalTree.js.map
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@@ -52,9 +52,30 @@ export default function Category({ isOpen, setOpen, data, }) {
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52
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model.removeFromSelection(getAllChildren(r));
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53
53
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},
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},
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{
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56
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label: 'Show all tracks',
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onClick: () => {
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58
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var _a;
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59
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for (const entry of ((_a = treeToMap(tree).get(id)) === null || _a === void 0 ? void 0 : _a.children) || []) {
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60
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if (!entry.children.length) {
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model.view.showTrack(entry.id);
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}
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63
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}
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64
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},
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65
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},
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66
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{
|
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67
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label: 'Hide all tracks',
|
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68
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+
onClick: () => {
|
|
69
|
+
var _a;
|
|
70
|
+
for (const entry of ((_a = treeToMap(tree).get(id)) === null || _a === void 0 ? void 0 : _a.children) || []) {
|
|
71
|
+
if (!entry.children.length) {
|
|
72
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+
model.view.hideTrack(entry.id);
|
|
73
|
+
}
|
|
74
|
+
}
|
|
75
|
+
},
|
|
76
|
+
},
|
|
55
77
|
], onMenuItemClick: (_event, callback) => {
|
|
56
78
|
callback();
|
|
57
79
|
setMenuEl(null);
|
|
58
80
|
}, open: Boolean(menuEl), onClose: () => setMenuEl(null) })) : null));
|
|
59
81
|
}
|
|
60
|
-
//# sourceMappingURL=TrackCategory.js.map
|
|
@@ -31,7 +31,7 @@ export default function TrackLabel({ data }) {
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31
31
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React.createElement(FormControlLabel, { className: classes.checkboxLabel, control: React.createElement(Checkbox, { className: classes.compactCheckbox, checked: checked, onChange: () => onChange(id), disabled: isUnsupported(name), inputProps: {
|
|
32
32
|
// @ts-expect-error
|
|
33
33
|
'data-testid': `htsTrackEntry-${id}`,
|
|
34
|
-
} }), label: React.createElement("div", { style: { background: selected ? '#cccc' : undefined } },
|
|
34
|
+
} }), label: React.createElement("div", { "data-testid": `htsTrackLabel-${id}`, style: { background: selected ? '#cccc' : undefined } },
|
|
35
35
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React.createElement(SanitizedHTML, { html: name })) })),
|
|
36
36
|
React.createElement(IconButton, { onClick: e => setInfo({ target: e.currentTarget, id, conf }), style: { padding: 0 }, "data-testid": `htsTrackEntryMenu-${id}` },
|
|
37
37
|
React.createElement(MoreHorizIcon, null)),
|
|
@@ -54,4 +54,3 @@ export default function TrackLabel({ data }) {
|
|
|
54
54
|
setInfo(undefined);
|
|
55
55
|
}, open: Boolean(info), onClose: () => setInfo(undefined) })) : null));
|
|
56
56
|
}
|
|
57
|
-
//# sourceMappingURL=TrackLabel.js.map
|
|
@@ -45,4 +45,3 @@ export default function Node({ data, isOpen, style, setOpen, }) {
|
|
|
45
45
|
} },
|
|
46
46
|
React.createElement("div", { className: !isLeaf ? classes.accordionColor : undefined }, !isLeaf ? (React.createElement(Category, { isOpen: isOpen, data: data, setOpen: setOpen })) : (React.createElement(TrackLabel, { data: data }))))));
|
|
47
47
|
}
|
|
48
|
-
//# sourceMappingURL=TrackListNode.js.map
|
|
@@ -1,5 +1,6 @@
|
|
|
1
1
|
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
2
|
-
import { HierarchicalTrackSelectorModel
|
|
2
|
+
import { HierarchicalTrackSelectorModel } from '../model';
|
|
3
|
+
import { TreeNode } from '../generateHierarchy';
|
|
3
4
|
export interface NodeData {
|
|
4
5
|
nestingLevel: number;
|
|
5
6
|
checked: boolean;
|
|
@@ -0,0 +1,12 @@
|
|
|
1
|
+
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
2
|
+
export declare function filterTracks(tracks: AnyConfigurationModel[], self: {
|
|
3
|
+
view?: {
|
|
4
|
+
type: string;
|
|
5
|
+
trackSelectorAnyOverlap?: boolean;
|
|
6
|
+
};
|
|
7
|
+
assemblyNames: string[];
|
|
8
|
+
}): ({
|
|
9
|
+
[x: string]: any;
|
|
10
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
11
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
12
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
@@ -0,0 +1,28 @@
|
|
|
1
|
+
import { readConfObject, } from '@jbrowse/core/configuration';
|
|
2
|
+
import { getEnv, getSession, notEmpty } from '@jbrowse/core/util';
|
|
3
|
+
import { hasAllOverlap, hasAnyOverlap } from './util';
|
|
4
|
+
export function filterTracks(tracks, self) {
|
|
5
|
+
const { assemblyManager } = getSession(self);
|
|
6
|
+
const { pluginManager } = getEnv(self);
|
|
7
|
+
const { view } = self;
|
|
8
|
+
if (!view) {
|
|
9
|
+
return [];
|
|
10
|
+
}
|
|
11
|
+
const trackListAssemblies = self.assemblyNames
|
|
12
|
+
.map(a => assemblyManager.get(a))
|
|
13
|
+
.filter(notEmpty);
|
|
14
|
+
return tracks
|
|
15
|
+
.filter(c => {
|
|
16
|
+
const trackAssemblyNames = readConfObject(c, 'assemblyNames');
|
|
17
|
+
const trackAssemblies = trackAssemblyNames === null || trackAssemblyNames === void 0 ? void 0 : trackAssemblyNames.map(name => assemblyManager.get(name)).filter(notEmpty);
|
|
18
|
+
return view.trackSelectorAnyOverlap
|
|
19
|
+
? hasAnyOverlap(trackAssemblies, trackListAssemblies)
|
|
20
|
+
: hasAllOverlap(trackAssemblies, trackListAssemblies);
|
|
21
|
+
})
|
|
22
|
+
.filter(c => {
|
|
23
|
+
const { displayTypes } = pluginManager.getViewType(view.type);
|
|
24
|
+
const compatDisplays = displayTypes.map(d => d.name);
|
|
25
|
+
const trackDisplays = c.displays.map((d) => d.type);
|
|
26
|
+
return hasAnyOverlap(compatDisplays, trackDisplays);
|
|
27
|
+
});
|
|
28
|
+
}
|
|
@@ -0,0 +1,21 @@
|
|
|
1
|
+
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
2
|
+
export type TreeNode = {
|
|
3
|
+
name: string;
|
|
4
|
+
id: string;
|
|
5
|
+
conf?: AnyConfigurationModel;
|
|
6
|
+
checked?: boolean;
|
|
7
|
+
isOpenByDefault?: boolean;
|
|
8
|
+
children: TreeNode[];
|
|
9
|
+
};
|
|
10
|
+
export declare function generateHierarchy(model: {
|
|
11
|
+
filterText: string;
|
|
12
|
+
activeSortTrackNames: boolean;
|
|
13
|
+
activeSortCategories: boolean;
|
|
14
|
+
view?: {
|
|
15
|
+
tracks: {
|
|
16
|
+
configuration: AnyConfigurationModel;
|
|
17
|
+
}[];
|
|
18
|
+
};
|
|
19
|
+
}, trackConfs: AnyConfigurationModel[], collapsed: {
|
|
20
|
+
get: (arg: string) => boolean | undefined;
|
|
21
|
+
}, extra?: string): TreeNode[];
|
|
@@ -0,0 +1,94 @@
|
|
|
1
|
+
import { readConfObject, } from '@jbrowse/core/configuration';
|
|
2
|
+
import { getSession } from '@jbrowse/core/util';
|
|
3
|
+
import { getTrackName } from '@jbrowse/core/util/tracks';
|
|
4
|
+
// locals
|
|
5
|
+
import { matches } from './util';
|
|
6
|
+
function sortConfs(confs, sortNames, sortCategories) {
|
|
7
|
+
// uses readConfObject instead of getTrackName so that the undefined
|
|
8
|
+
// reference sequence track is sorted to the top
|
|
9
|
+
const ret = confs.map(c => {
|
|
10
|
+
var _a, _b, _c;
|
|
11
|
+
return [
|
|
12
|
+
c,
|
|
13
|
+
readConfObject(c, 'name'),
|
|
14
|
+
((_a = readConfObject(c, 'category')) === null || _a === void 0 ? void 0 : _a[0]) || '',
|
|
15
|
+
((_b = readConfObject(c, 'category')) === null || _b === void 0 ? void 0 : _b[1]) || '',
|
|
16
|
+
((_c = readConfObject(c, 'category')) === null || _c === void 0 ? void 0 : _c[2]) || '',
|
|
17
|
+
];
|
|
18
|
+
});
|
|
19
|
+
if (sortNames) {
|
|
20
|
+
ret.sort((a, b) => a[1].localeCompare(b[1]));
|
|
21
|
+
}
|
|
22
|
+
if (sortCategories) {
|
|
23
|
+
// sort up to three sub-category levels, harder to code it to go deeper
|
|
24
|
+
// than this and likely rarely used
|
|
25
|
+
ret.sort((a, b) => {
|
|
26
|
+
if (a[2] !== b[2]) {
|
|
27
|
+
return a[2].localeCompare(b[2]);
|
|
28
|
+
}
|
|
29
|
+
else if (a[3] !== b[3]) {
|
|
30
|
+
return a[3].localeCompare(b[3]);
|
|
31
|
+
}
|
|
32
|
+
else if (a[4] !== b[4]) {
|
|
33
|
+
return a[4].localeCompare(b[4]);
|
|
34
|
+
}
|
|
35
|
+
return 0;
|
|
36
|
+
});
|
|
37
|
+
}
|
|
38
|
+
return ret.map(a => a[0]);
|
|
39
|
+
}
|
|
40
|
+
export function generateHierarchy(model, trackConfs, collapsed, extra) {
|
|
41
|
+
const hierarchy = { children: [] };
|
|
42
|
+
const { filterText, activeSortTrackNames, activeSortCategories, view } = model;
|
|
43
|
+
if (!view) {
|
|
44
|
+
return [];
|
|
45
|
+
}
|
|
46
|
+
const session = getSession(model);
|
|
47
|
+
const viewTracks = view.tracks;
|
|
48
|
+
const confs = trackConfs.filter(conf => matches(filterText, conf, session));
|
|
49
|
+
// uses getConf
|
|
50
|
+
for (const conf of sortConfs(confs, activeSortTrackNames, activeSortCategories)) {
|
|
51
|
+
// copy the categories since this array can be mutated downstream
|
|
52
|
+
const categories = [...(readConfObject(conf, 'category') || [])];
|
|
53
|
+
// hack where if trackId ends with sessionTrack, then push it to a
|
|
54
|
+
// category that starts with a space to force sort to the top
|
|
55
|
+
if (conf.trackId.endsWith('sessionTrack')) {
|
|
56
|
+
categories.unshift(' Session tracks');
|
|
57
|
+
}
|
|
58
|
+
let currLevel = hierarchy;
|
|
59
|
+
// find existing category to put track into or create it
|
|
60
|
+
for (let i = 0; i < categories.length; i++) {
|
|
61
|
+
const category = categories[i];
|
|
62
|
+
const ret = currLevel.children.find(c => c.name === category);
|
|
63
|
+
const id = [extra, categories.slice(0, i + 1).join(',')]
|
|
64
|
+
.filter(f => !!f)
|
|
65
|
+
.join('-');
|
|
66
|
+
if (!ret) {
|
|
67
|
+
const n = {
|
|
68
|
+
children: [],
|
|
69
|
+
name: category,
|
|
70
|
+
id,
|
|
71
|
+
isOpenByDefault: !collapsed.get(id),
|
|
72
|
+
};
|
|
73
|
+
currLevel.children.push(n);
|
|
74
|
+
currLevel = n;
|
|
75
|
+
}
|
|
76
|
+
else {
|
|
77
|
+
currLevel = ret;
|
|
78
|
+
}
|
|
79
|
+
}
|
|
80
|
+
// uses splice to try to put all leaf nodes above "category nodes" if you
|
|
81
|
+
// change the splice to a simple push and open
|
|
82
|
+
// test_data/test_order/config.json you will see the weirdness
|
|
83
|
+
const r = currLevel.children.findIndex(elt => elt.children.length);
|
|
84
|
+
const idx = r === -1 ? currLevel.children.length : r;
|
|
85
|
+
currLevel.children.splice(idx, 0, {
|
|
86
|
+
id: conf.trackId,
|
|
87
|
+
name: getTrackName(conf, session),
|
|
88
|
+
conf,
|
|
89
|
+
checked: viewTracks.some(f => f.configuration === conf),
|
|
90
|
+
children: [],
|
|
91
|
+
});
|
|
92
|
+
}
|
|
93
|
+
return hierarchy.children;
|
|
94
|
+
}
|
|
@@ -1,19 +1,7 @@
|
|
|
1
1
|
import { Instance } from 'mobx-state-tree';
|
|
2
2
|
import { AnyConfigurationModel } from '@jbrowse/core/configuration';
|
|
3
|
-
import { AbstractSessionModel } from '@jbrowse/core/util';
|
|
4
3
|
import PluginManager from '@jbrowse/core/PluginManager';
|
|
5
|
-
|
|
6
|
-
export type TreeNode = {
|
|
7
|
-
name: string;
|
|
8
|
-
id: string;
|
|
9
|
-
conf?: AnyConfigurationModel;
|
|
10
|
-
checked?: boolean;
|
|
11
|
-
isOpenByDefault?: boolean;
|
|
12
|
-
children: TreeNode[];
|
|
13
|
-
};
|
|
14
|
-
export declare function generateHierarchy(model: HierarchicalTrackSelectorModel, trackConfigurations: AnyConfigurationModel[], collapsed: {
|
|
15
|
-
get: (arg: string) => boolean | undefined;
|
|
16
|
-
}, extra?: string): TreeNode[];
|
|
4
|
+
import { TreeNode } from './generateHierarchy';
|
|
17
5
|
/**
|
|
18
6
|
* #stateModel HierarchicalTrackSelectorWidget
|
|
19
7
|
*/
|
|
@@ -26,10 +14,22 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
|
|
|
26
14
|
* #property
|
|
27
15
|
*/
|
|
28
16
|
type: import("mobx-state-tree").ISimpleType<"HierarchicalTrackSelectorWidget">;
|
|
17
|
+
/**
|
|
18
|
+
* #property
|
|
19
|
+
*/
|
|
20
|
+
initialized: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
29
21
|
/**
|
|
30
22
|
* #property
|
|
31
23
|
*/
|
|
32
24
|
collapsed: import("mobx-state-tree").IMapType<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
25
|
+
/**
|
|
26
|
+
* #property
|
|
27
|
+
*/
|
|
28
|
+
sortTrackNames: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
29
|
+
/**
|
|
30
|
+
* #property
|
|
31
|
+
*/
|
|
32
|
+
sortCategories: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>;
|
|
33
33
|
/**
|
|
34
34
|
* #property
|
|
35
35
|
*/
|
|
@@ -42,6 +42,14 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
|
|
|
42
42
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
43
43
|
filterText: string;
|
|
44
44
|
} & {
|
|
45
|
+
/**
|
|
46
|
+
* #action
|
|
47
|
+
*/
|
|
48
|
+
setSortTrackNames(val: boolean): void;
|
|
49
|
+
/**
|
|
50
|
+
* #action
|
|
51
|
+
*/
|
|
52
|
+
setSortCategories(val: boolean): void;
|
|
45
53
|
/**
|
|
46
54
|
* #action
|
|
47
55
|
*/
|
|
@@ -66,6 +74,14 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
|
|
|
66
74
|
* #action
|
|
67
75
|
*/
|
|
68
76
|
toggleCategory(pathName: string): void;
|
|
77
|
+
/**
|
|
78
|
+
* #action
|
|
79
|
+
*/
|
|
80
|
+
setCategoryCollapsed(pathName: string, status: boolean): void;
|
|
81
|
+
/**
|
|
82
|
+
* #action
|
|
83
|
+
*/
|
|
84
|
+
expandAllCategories(): void;
|
|
69
85
|
/**
|
|
70
86
|
* #action
|
|
71
87
|
*/
|
|
@@ -85,6 +101,14 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
|
|
|
85
101
|
*/
|
|
86
102
|
readonly assemblyNames: string[];
|
|
87
103
|
} & {
|
|
104
|
+
/**
|
|
105
|
+
* #getter
|
|
106
|
+
*/
|
|
107
|
+
readonly activeSortTrackNames: any;
|
|
108
|
+
/**
|
|
109
|
+
* #getter
|
|
110
|
+
*/
|
|
111
|
+
readonly activeSortCategories: any;
|
|
88
112
|
/**
|
|
89
113
|
* #method
|
|
90
114
|
* filter out tracks that don't match the current display types
|
|
@@ -105,6 +129,23 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
|
|
|
105
129
|
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
106
130
|
setSubschema(slotName: string, data: unknown): any;
|
|
107
131
|
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
132
|
+
} & {
|
|
133
|
+
/**
|
|
134
|
+
* #method
|
|
135
|
+
*/
|
|
136
|
+
connectionHierarchy(connection: {
|
|
137
|
+
name: string;
|
|
138
|
+
tracks: AnyConfigurationModel[];
|
|
139
|
+
}): TreeNode[];
|
|
140
|
+
} & {
|
|
141
|
+
readonly allTracks: {
|
|
142
|
+
group: any;
|
|
143
|
+
tracks: ({
|
|
144
|
+
[x: string]: any;
|
|
145
|
+
} & import("mobx-state-tree/dist/internal").NonEmptyObject & {
|
|
146
|
+
setSubschema(slotName: string, data: unknown): any;
|
|
147
|
+
} & import("mobx-state-tree").IStateTreeNode<import("@jbrowse/core/configuration").AnyConfigurationSchemaType>)[];
|
|
148
|
+
}[];
|
|
108
149
|
} & {
|
|
109
150
|
/**
|
|
110
151
|
* #getter
|
|
@@ -112,26 +153,25 @@ export default function stateTreeFactory(pluginManager: PluginManager): import("
|
|
|
112
153
|
readonly hierarchy: {
|
|
113
154
|
name: string;
|
|
114
155
|
id: string;
|
|
115
|
-
children:
|
|
116
|
-
id: any;
|
|
156
|
+
children: {
|
|
117
157
|
name: any;
|
|
158
|
+
id: any;
|
|
118
159
|
children: TreeNode[];
|
|
119
|
-
|
|
120
|
-
expanded: boolean;
|
|
121
|
-
};
|
|
122
|
-
} | {
|
|
123
|
-
name: string;
|
|
124
|
-
id: string;
|
|
125
|
-
children: TreeNode[];
|
|
126
|
-
})[];
|
|
160
|
+
}[];
|
|
127
161
|
};
|
|
162
|
+
} & {
|
|
128
163
|
/**
|
|
129
|
-
* #
|
|
164
|
+
* #action
|
|
130
165
|
*/
|
|
131
|
-
|
|
132
|
-
|
|
133
|
-
|
|
134
|
-
|
|
166
|
+
collapseSubCategories(): void;
|
|
167
|
+
/**
|
|
168
|
+
* #action
|
|
169
|
+
*/
|
|
170
|
+
collapseTopLevelCategories(): void;
|
|
171
|
+
} & {
|
|
172
|
+
afterCreate(): void;
|
|
173
|
+
} & {
|
|
174
|
+
readonly hasAnySubcategories: boolean;
|
|
135
175
|
}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
|
|
136
176
|
export type HierarchicalTrackSelectorStateModel = ReturnType<typeof stateTreeFactory>;
|
|
137
177
|
export type HierarchicalTrackSelectorModel = Instance<HierarchicalTrackSelectorStateModel>;
|